TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493528.2.1
         (627 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO160908.1|CO160908  FLD1_25_H09.b1_A029 Root flooded Pin...   256   1e-067

>gb|CO160908.1|CO160908 FLD1_25_H09.b1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_25_H09_A029 3', mRNA sequence
          Length = 813

 Score =  256 bits (553), Expect = 1e-067
 Identities = 112/172 (65%), Positives = 141/172 (81%)
 Frame = -2 / +2

                                                                       
Query: 590 SLLLEKEYRNNILDDLLEVKSFLTQRLGEMRNADTSSLQHQVQAVSPFVLQQHAPDSLEN 411
           S  L+ EYRN +LDDL E+K+FL QRL E+R  +TSSLQHQV AV+P VLQQ+ PDSL  
Sbjct: 65  SPFLDTEYRNKLLDDLFELKAFLNQRLVELRIQETSSLQHQVHAVTPPVLQQYGPDSLCT 244

                                                                       
Query: 410 MLVEISSAISLLTNQKTLDLIMILNSKRFLDRLVSSLEEKKHHEVKLREGLGDLSVKRME 231
           ML ++S AISL+TN+KT DLIMILNSKRFLDRL  SL +KK +EVKL E + ++S +RME
Sbjct: 245 MLSDLSQAISLVTNRKTRDLIMILNSKRFLDRLEYSLNQKKQYEVKLLESMQEVSKRRME 424

                                                               
Query: 230 LQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVYIIGEINTLLSSS 75
           L+++LSS WPKQEAAI++TRELKKLCE++L ++FDGRPV IIGEIN +L  +
Sbjct: 425 LRSSLSSLWPKQEAAISRTRELKKLCETSLFAMFDGRPVNIIGEINNILGQA 580




 Score =  100 bits (213), Expect(2) = 5e-031
 Identities = 50/94 (53%), Positives = 63/94 (67%)
 Frame = +1 / -1

                                                                       
Query: 310 TNLSRNLLELRIIIRSRVF*LVSNEIADEISTSMFSKLSGACCWRTKGETACT*CCRDDV 489
           +NLS+NL ELRI+I+SRVF  V+ +IA E S ++  + SG  C  T G TA T CC+D+V
Sbjct: 345 SNLSKNLFELRIMIKSRVFLFVTKDIACERSDNIVQRESGPYCCNTGGVTA*TWCCKDEV 166

                                             
Query: 490 SAFLISPKR*VKNDFTSSKSSRILFLYSFSSNKL 591
           S    S   * KN F+S+KSSR LFLYS S N L
Sbjct: 165 S*IRSSTNL*FKNAFSSNKSSRSLFLYSVSKNGL 64




 Score = 53.8 bits (111), Expect(2) = 5e-031
 Identities = 25/55 (45%), Positives = 30/55 (54%)
 Frame = +1 / -1

                                                                  
Query: 91  VLISPIIYTGLPSKTXXXXXXXXXXXXXXXXIAASCFGHDDDSAFCSSIRLTDKS 255
           +LISP+I TGLPS                  IAASC GH++D+   SSIRL D S
Sbjct: 564 LLISPMILTGLPSNIAKRLVSQSFLSSLVLEIAASCLGHNEDNELRSSIRLFDTS 400



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 290,186,339
Number of Sequences: 355925
Number of extensions: 3422067
Number of successful extensions: 31981
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8520950490
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)