TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485885.2.1
(1063 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR091543.1|DR091543 RTAL1_22_H02.b1_A029 Roots plus adde... 194 3e-053
gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control ... 125 2e-051
gb|BQ106995.1|BQ106995 NXLV085_C09_F NXLV (Nsf Xylem Late w... 199 3e-050
gb|CO161650.1|CO161650 FLD1_30_F08.b1_A029 Root flooded Pin... 111 5e-050
gb|CF393653.1|CF393653 RTDR3_15_B07.g1_A022 Loblolly pine r... 194 9e-049
gb|CF401719.1|CF401719 RTWW1_14_A04.g1_A015 Well-watered lo... 116 1e-047
gb|DR057552.1|DR057552 RTNIT1_6_A10.g1_A029 Roots minus nit... 115 3e-047
gb|DR019885.1|DR019885 STRS1_33_D06.b1_A034 Shoot tip pitch... 119 2e-046
gb|DR160864.1|DR160864 RTFE1_8_B03.g1_A029 Roots minus iron... 109 5e-046
gb|CF394916.1|CF394916 RTDS2_8_F04.g1_A021 Drought-stressed... 114 5e-046
gb|CF394807.1|CF394807 RTDS2_7_F05.g1_A021 Drought-stressed... 114 5e-046
gb|CF478552.1|CF478552 RTWW3_20_C12.g1_A022 Well-watered lo... 108 8e-044
gb|CO162822.1|CO162822 FLD1_37_F01.g1_A029 Root flooded Pin... 117 3e-042
gb|CF472330.1|CF472330 RTDS1_9_E09.b1_A015 Drought-stressed... 117 3e-042
gb|BX680435.1|BX680435 BX680435 RS Pinus pinaster cDNA clon... 117 5e-042
gb|DR386533.1|DR386533 RTHG1_15_G09.g1_A029 Roots plus adde... 109 3e-041
gb|DR694987.1|DR694987 EST1085080 Normalized pine embryo li... 113 6e-041
gb|DT638838.1|DT638838 EST1153769 Normalized pine embryo li... 113 6e-041
gb|DR088632.1|DR088632 RTAL1_3_G06.b1_A029 Roots plus added... 113 6e-041
gb|BX681374.1|BX681374 BX681374 RS Pinus pinaster cDNA clon... 118 2e-040
gb|CF474429.1|CF474429 RTWW2_20_F05.g1_A021 Well-watered lo... 106 4e-040
gb|DR111145.1|DR111145 RTS1_15_D11.g1_A029 Roots minus sulf... 117 2e-038
gb|DR177492.1|DR177492 RTMNUT1_5_D07.g1_A029 Roots minus mi... 114 5e-036
gb|BG039597.1|BG039597 NXSI_100_H07_F NXSI (Nsf Xylem Side ... 90 9e-036
gb|DR098127.1|DR098127 STRR1_39_F11.b1_A033 Stem Response R... 95 2e-035
gb|CF478562.1|CF478562 RTWW3_20_A12.g1_A022 Well-watered lo... 103 2e-035
gb|DR101617.1|DR101617 STRR1_74_C11.g1_A033 Stem Response R... 88 4e-035
gb|CO161727.1|CO161727 FLD1_30_F08.g1_A029 Root flooded Pin... 111 1e-034
gb|DR015214.1|DR015214 STRS1_2_D11.b1_A034 Shoot tip pitch ... 100 3e-034
gb|DR021519.1|DR021519 STRS1_45_E08.b1_A034 Shoot tip pitch... 101 3e-034
gb|DT626044.1|DT626044 EST1157968 Sequencing ESTs from lobl... 100 7e-034
gb|BQ702864.1|BQ702864 NXSI_133_F03_F NXSI (Nsf Xylem Side ... 144 7e-034
gb|CV134986.1|CV134986 EST846195 Sequencing ESTs from loblo... 99 1e-033
gb|CO363000.1|CO363000 RTK1_7_B10.b1_A029 Roots minus potas... 90 6e-033
gb|DR019261.1|DR019261 STRS1_28_F11.g1_A034 Shoot tip pitch... 95 7e-033
gb|CO172600.1|CO172600 NDL1_30_E11.g1_A029 Needles control ... 95 7e-033
gb|DR019177.1|DR019177 STRS1_28_F11.b2_A034 Shoot tip pitch... 95 7e-033
gb|CF387087.1|CF387087 RTDR1_10_C07.g1_A015 Loblolly pine r... 95 7e-033
gb|CV033205.1|CV033205 RTNACL1_33_B10.b1_A029 Roots plus ad... 94 9e-033
gb|CF385056.1|CF385056 RTDR1_1_E08.g1_A015 Loblolly pine ro... 94 2e-032
gb|CF386347.1|CF386347 RTDR1_13_F04.g1_A015 Loblolly pine r... 94 2e-032
gb|CF472392.1|CF472392 RTDS1_9_E09.g1_A015 Drought-stressed... 117 2e-032
gb|CO413944.1|CO413944 EST844329 Sequencing ESTs from loblo... 93 2e-032
gb|DN447754.1|DN447754 EST943553 Sequencing ESTs from loblo... 93 2e-032
gb|DT624388.1|DT624388 EST1158663 Sequencing ESTs from lobl... 93 2e-032
gb|CO410810.1|CO410810 EST841195 Sequencing ESTs from loblo... 93 2e-032
gb|CO410963.1|CO410963 EST841348 Sequencing ESTs from loblo... 93 2e-032
gb|CO413888.1|CO413888 EST844273 Sequencing ESTs from loblo... 93 2e-032
gb|CF667004.1|CF667004 RTCNT1_27_C11.g1_A029 Root control P... 95 2e-032
gb|DR181918.1|DR181918 RTMNUT1_41_F12.g1_A029 Roots minus m... 101 8e-032
gb|DR060591.1|DR060591 RTNIT1_28_F10.g1_A029 Roots minus ni... 95 1e-031
gb|CO367803.1|CO367803 RTK1_36_E12.g1_A029 Roots minus pota... 109 2e-031
gb|CF474107.1|CF474107 RTWW2_18_C05.g1_A021 Well-watered lo... 91 2e-031
dbj|BD224444.1| Materials and methods for the modification ... 116 3e-031
gb|DR179487.1|DR179487 RTMNUT1_22_H11.b2_A029 Roots minus m... 77 3e-031
gb|DT625922.1|DT625922 EST1157846 Sequencing ESTs from lobl... 93 5e-031
gb|CV035264.1|CV035264 RTNACL1_14_H03.g1_A029 Roots plus ad... 93 9e-031
gb|CX712559.1|CX712559 RTPQ1_3_F09.b2_A032 Roots treated wi... 96 1e-030
gb|CF400127.1|CF400127 RTWW1_3_H10.g1_A015 Well-watered lob... 90 1e-030
gb|CF398051.1|CF398051 RTDS3_22_D05.b1_A022 Drought-stresse... 97 2e-030
gb|DR388603.1|DR388603 RTHG1_29_G08.b1_A029 Roots plus adde... 68 2e-030
gb|CF396075.1|CF396075 RTDS2_13_A03.g1_A021 Drought-stresse... 101 3e-030
gb|CF472572.1|CF472572 RTDS1_10_C02.g1_A015 Drought-stresse... 101 3e-030
gb|CF397219.1|CF397219 RTDS3_2_G04.b2_A022 Drought-stressed... 101 3e-030
gb|DR112917.1|DR112917 RTS1_31_C10.g1_A029 Roots minus sulf... 83 3e-030
gb|CF386446.1|CF386446 RTDR1_14_C12.g1_A015 Loblolly pine r... 90 4e-030
gb|CO362361.1|CO362361 RTK1_3_C10.b1_A029 Roots minus potas... 91 5e-030
gb|CF471631.1|CF471631 RTDS1_4_B06.g1_A015 Drought-stressed... 101 5e-030
gb|DR167350.1|DR167350 RTPHOS1_18_F11.b1_A029 Roots minus p... 101 9e-030
gb|CO201469.1|CO201469 RTCNT2_6_A10.b1_A029 Root control 2 ... 83 1e-029
gb|CO161081.1|CO161081 FLD1_26_C01.g1_A029 Root flooded Pin... 66 1e-029
gb|DR018139.1|DR018139 STRS1_20_E09.g1_A034 Shoot tip pitch... 85 1e-029
gb|CF393594.1|CF393594 RTDR3_15_B07.b1_A022 Loblolly pine r... 114 2e-029
gb|DR095142.1|DR095142 STRR1_19_C05.b1_A033 Stem Response R... 86 6e-029
gb|CO165223.1|CO165223 FLD1_53_D08.b1_A029 Root flooded Pin... 75 7e-029
gb|DR744031.1|DR744031 RTCU1_19_G01.g1_A029 Roots plus adde... 81 1e-028
gb|DR180536.1|DR180536 RTMNUT1_33_F10.b1_A029 Roots minus m... 81 1e-028
gb|CO176349.1|CO176349 NDL1_61_A07.g1_A029 Needles control ... 81 1e-028
gb|CO159636.1|CO159636 FLD1_14_G06.g1_A029 Root flooded Pin... 81 1e-028
gb|DR682869.1|DR682869 EST1072944 Normalized pine embryo li... 109 1e-028
gb|CF670695.1|CF670695 RTCNT1_52_A02.b1_A029 Root control P... 86 1e-028
gb|DR023906.1|DR023906 STRS1_60_F12.g1_A034 Shoot tip pitch... 86 1e-028
gb|CF666350.1|CF666350 RTCNT1_22_D10.g1_A029 Root control P... 85 2e-028
gb|DR117368.1|DR117368 RTMG1_6_C05.g1_A029 Roots minus magn... 80 3e-028
gb|DR060675.1|DR060675 RTNIT1_29_G03.b1_A029 Roots minus ni... 81 3e-028
gb|CO363521.1|CO363521 RTK1_10_F05.b1_A029 Roots minus pota... 79 4e-028
gb|CO164398.1|CO164398 FLD1_47_F07.g1_A029 Root flooded Pin... 86 4e-028
gb|CV134798.1|CV134798 EST846007 Sequencing ESTs from loblo... 85 5e-028
gb|CX646003.1|CX646003 COLD1_6_D11.g1_A029 Root cold Pinus ... 88 7e-028
gb|DR744020.1|DR744020 RTCU1_19_E11.g1_A029 Roots plus adde... 82 8e-028
gb|DR018897.1|DR018897 STRS1_26_B10.g1_A034 Shoot tip pitch... 86 1e-027
gb|CO364719.1|CO364719 RTK1_21_H11.b1_A029 Roots minus pota... 86 1e-027
gb|CO366290.1|CO366290 RTK1_27_A12.b1_A029 Roots minus pota... 86 1e-027
gb|CO171082.1|CO171082 NDL1_18_H08.g1_A029 Needles control ... 83 1e-027
gb|CF470340.1|CF470340 RTDS1_18_D11.g1_A015 Drought-stresse... 85 1e-027
gb|DR024455.1|DR024455 STRS1_65_C08.b1_A034 Shoot tip pitch... 78 2e-027
gb|CF666532.1|CF666532 RTCNT1_24_B10.b1_A029 Root control P... 110 2e-027
gb|CO163860.1|CO163860 FLD1_44_F02.b1_A029 Root flooded Pin... 95 2e-027
gb|CO366369.1|CO366369 RTK1_27_A12.g1_A029 Roots minus pota... 86 3e-027
gb|CV034765.1|CV034765 RTNACL1_11_A09.g1_A029 Roots plus ad... 83 3e-027
gb|CO366516.1|CO366516 RTK1_28_G11.b1_A029 Roots minus pota... 81 3e-027
gb|CO364809.1|CO364809 RTK1_21_H11.g1_A029 Roots minus pota... 86 4e-027
gb|CO363008.1|CO363008 RTK1_7_C07.b1_A029 Roots minus potas... 105 4e-027
gb|CO176695.1|CO176695 NDL1_63_D04.g1_A029 Needles control ... 81 4e-027
gb|CO362964.1|CO362964 RTK1_6_G06.g1_A029 Roots minus potas... 76 4e-027
gb|BX250474.1|BX250474 BX250474 Pinus pinaster differenciat... 81 4e-027
gb|CO196958.1|CO196958 GEO1_2_H08.g1_A029 Root gravitropism... 91 5e-027
gb|BQ699997.1|BQ699997 NXRV132_G06_F NXRV (Nsf Xylem Root w... 81 5e-027
gb|BX678334.1|BX678334 BX678334 RN Pinus pinaster cDNA clon... 83 7e-027
gb|CF397284.1|CF397284 RTDS3_2_C09.g1_A022 Drought-stressed... 73 8e-027
gb|DN458892.1|DN458892 EST954691 Sequencing ESTs from loblo... 89 2e-026
gb|DT626677.1|DT626677 EST1159753 Sequencing ESTs from lobl... 89 2e-026
gb|DR388606.1|DR388606 RTHG1_29_G11.b1_A029 Roots plus adde... 86 2e-026
gb|DR024014.1|DR024014 STRS1_61_E05.g1_A034 Shoot tip pitch... 81 2e-026
gb|CO165247.1|CO165247 FLD1_53_G10.b1_A029 Root flooded Pin... 86 2e-026
gb|DR015919.1|DR015919 STRS1_6_B08.g1_A034 Shoot tip pitch ... 66 3e-026
gb|CO364178.1|CO364178 RTK1_14_E02.b1_A029 Roots minus pota... 76 3e-026
gb|DR093819.1|DR093819 STRR1_10_D02.g1_A033 Stem Response R... 81 3e-026
gb|CF385981.1|CF385981 RTDR1_7_E07.g1_A015 Loblolly pine ro... 95 3e-026
gb|CF403096.1|CF403096 RTWW1_24_D09.g1_A015 Well-watered lo... 78 3e-026
gb|DT631207.1|DT631207 EST1146138 Normalized pine embryo li... 67 5e-026
gb|DR099835.1|DR099835 STRR1_59_B12.b1_A033 Stem Response R... 76 5e-026
gb|DR743885.1|DR743885 RTCU1_18_F04.g1_A029 Roots plus adde... 80 6e-026
gb|BX249942.1|BX249942 BX249942 Pinus pinaster differenciat... 86 6e-026
gb|DR117403.1|DR117403 RTMG1_6_F06.g1_A029 Roots minus magn... 71 6e-026
gb|CX645779.1|CX645779 COLD1_5_F07.b1_A029 Root cold Pinus ... 95 8e-026
gb|DR069312.1|DR069312 RTDK1_6_H08.b1_A029 Roots, dark Pinu... 75 9e-026
gb|DR057656.1|DR057656 RTNIT1_7_C03.b1_A029 Roots minus nit... 100 1e-025
gb|DR057313.1|DR057313 RTNIT1_5_C03.b1_A029 Roots minus nit... 100 1e-025
gb|DR160776.1|DR160776 RTFE1_8_B03.b1_A029 Roots minus iron... 100 1e-025
gb|CO167421.1|CO167421 FLD1_68_G10.g1_A029 Root flooded Pin... 81 1e-025
gb|DR181620.1|DR181620 RTMNUT1_40_B04.b2_A029 Roots minus m... 80 2e-025
gb|CO364236.1|CO364236 RTK1_14_B09.g1_A029 Roots minus pota... 74 2e-025
gb|CF470929.1|CF470929 RTDS1_15_D01.g1_A015 Drought-stresse... 74 2e-025
gb|CF470501.1|CF470501 RTDS1_17_D08.g1_A015 Drought-stresse... 74 2e-025
gb|CF401158.1|CF401158 RTWW1_10_D01.g1_A015 Well-watered lo... 90 2e-025
gb|BX676981.1|BX676981 BX676981 RN Pinus pinaster cDNA clon... 78 2e-025
gb|DR018577.1|DR018577 STRS1_24_C07.b1_A034 Shoot tip pitch... 65 2e-025
gb|DR180778.1|DR180778 RTMNUT1_34_F12.g1_A029 Roots minus m... 79 3e-025
gb|BX253864.1|BX253864 BX253864 Pinus pinaster differenciat... 76 3e-025
gb|CF663283.1|CF663283 RTCNT1_1_H12.g1_A029 Root control Pi... 88 5e-025
gb|DR093736.1|DR093736 STRR1_10_D02.b1_A033 Stem Response R... 81 5e-025
gb|CF473082.1|CF473082 RTDS1_1_H08.g1_A015 Drought-stressed... 93 5e-025
gb|CO368306.1|CO368306 RTK1_39_G08.g1_A029 Roots minus pota... 76 1e-024
gb|CO368218.1|CO368218 RTK1_39_G08.b1_A029 Roots minus pota... 76 1e-024
gb|CF403057.1|CF403057 RTWW1_24_E04.g1_A015 Well-watered lo... 74 1e-024
gb|CO159443.1|CO159443 FLD1_13_D05.g1_A029 Root flooded Pin... 66 2e-024
gb|CO159361.1|CO159361 FLD1_13_D05.b1_A029 Root flooded Pin... 66 2e-024
gb|CF470928.1|CF470928 RTDS1_15_E03.g1_A015 Drought-stresse... 66 2e-024
gb|DR052787.1|DR052787 RTCA1_6_H02.g1_A029 Roots minus calc... 79 3e-024
gb|DR018619.1|DR018619 STRS1_24_A10.g1_A034 Shoot tip pitch... 76 4e-024
gb|DT625926.1|DT625926 EST1157850 Sequencing ESTs from lobl... 85 5e-024
gb|DR015862.1|DR015862 STRS1_6_D07.b1_A034 Shoot tip pitch ... 70 9e-024
gb|DR015938.1|DR015938 STRS1_6_D07.g1_A034 Shoot tip pitch ... 70 9e-024
gb|CV031446.1|CV031446 RTNACL1_1_D07.g1_A029 Roots plus add... 70 9e-024
gb|CO159644.1|CO159644 FLD1_14_H03.g1_A029 Root flooded Pin... 73 2e-023
gb|DR068609.1|DR068609 RTDK1_1_G05.g1_A029 Roots, dark Pinu... 74 2e-023
gb|DR101612.1|DR101612 STRR1_74_C05.g1_A033 Stem Response R... 77 2e-023
gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response R... 68 3e-023
gb|DR744088.1|DR744088 RTCU1_20_D07.b1_A029 Roots plus adde... 81 4e-023
gb|DR385279.1|DR385279 RTHG1_7_E09.g1_A029 Roots plus added... 64 4e-023
gb|DR385195.1|DR385195 RTHG1_7_E09.b1_A029 Roots plus added... 64 4e-023
gb|CF471095.1|CF471095 RTDS1_16_G03.g1_A015 Drought-stresse... 65 4e-023
gb|CO368412.1|CO368412 RTK1_40_B05.g1_A029 Roots minus pota... 93 4e-023
gb|DR024314.1|DR024314 STRS1_64_C03.b1_A034 Shoot tip pitch... 76 6e-023
gb|BF778862.1|BF778862 NXSI_089_C07_F NXSI (Nsf Xylem Side ... 71 6e-023
gb|DR078636.1|DR078636 RTFEPL1_6_A05.b1_A029 Roots plus add... 62 8e-023
gb|DR168289.1|DR168289 RTPHOS1_24_B04.g1_A029 Roots minus p... 78 8e-023
gb|DR117580.1|DR117580 RTMG1_7_G04.g1_A029 Roots minus magn... 75 8e-023
gb|DR023822.1|DR023822 STRS1_60_F11.b1_A034 Shoot tip pitch... 69 1e-022
gb|DR110554.1|DR110554 RTS1_11_C05.g1_A029 Roots minus sulf... 64 1e-022
gb|DT637192.1|DT637192 EST1152123 Normalized pine embryo li... 75 1e-022
gb|DR692114.1|DR692114 EST1082201 Normalized pine embryo li... 75 1e-022
gb|BF220696.1|BF220696 NXCI_151_G07_F NXCI (Nsf Xylem Compr... 67 3e-022
gb|CF470473.1|CF470473 RTDS1_17_C10.g1_A015 Drought-stresse... 68 3e-022
gb|DR068520.1|DR068520 RTDK1_1_G05.b1_A029 Roots, dark Pinu... 70 3e-022
gb|CO165133.1|CO165133 FLD1_52_C08.g1_A029 Root flooded Pin... 68 4e-022
gb|CO165060.1|CO165060 FLD1_52_C08.b1_A029 Root flooded Pin... 68 4e-022
gb|DR101174.1|DR101174 STRR1_71_C05.b1_A033 Stem Response R... 68 4e-022
gb|DR093166.1|DR093166 STRR1_6_B04.g1_A033 Stem Response Re... 68 4e-022
gb|CO369423.1|CO369423 RTK1_47_B12.b1_A029 Roots minus pota... 68 4e-022
gb|DR020338.1|DR020338 STRS1_36_F03.b1_A034 Shoot tip pitch... 68 4e-022
gb|CO160872.1|CO160872 FLD1_25_E02.b1_A029 Root flooded Pin... 68 4e-022
gb|CO161871.1|CO161871 FLD1_31_E09.g1_A029 Root flooded Pin... 68 4e-022
gb|DR017118.1|DR017118 STRS1_14_E02.b1_A034 Shoot tip pitch... 68 4e-022
gb|DR101844.1|DR101844 STRR1_76_F02.b1_A033 Stem Response R... 68 4e-022
gb|CO158429.1|CO158429 FLD1_6_G10.g1_A029 Root flooded Pinu... 68 4e-022
gb|DR024108.1|DR024108 STRS1_62_A06.g1_A034 Shoot tip pitch... 62 4e-022
gb|CO160954.1|CO160954 FLD1_25_E02.g1_A029 Root flooded Pin... 68 5e-022
gb|CO159794.1|CO159794 FLD1_16_A12.b1_A029 Root flooded Pin... 68 5e-022
gb|DR017196.1|DR017196 STRS1_14_E02.g1_A034 Shoot tip pitch... 68 5e-022
gb|DR023554.1|DR023554 STRS1_58_A10.g1_A034 Shoot tip pitch... 68 5e-022
gb|CO364746.1|CO364746 RTK1_21_C04.g1_A029 Roots minus pota... 64 7e-022
gb|DR164234.1|DR164234 RTFE1_47_E03.g1_A029 Roots minus iro... 83 7e-022
gb|CX649821.1|CX649821 COLD1_41_E05.g1_A029 Root cold Pinus... 64 1e-021
gb|DR015813.1|DR015813 STRS1_5_F11.g1_A034 Shoot tip pitch ... 62 1e-021
gb|DR054231.1|DR054231 RTCA1_16_B10.b1_A029 Roots minus cal... 66 1e-021
gb|CO160820.1|CO160820 FLD1_24_E03.g1_A029 Root flooded Pin... 87 1e-021
gb|CF390898.1|CF390898 RTDR3_2_B12.g1_A022 Loblolly pine ro... 67 2e-021
gb|CO162696.1|CO162696 FLD1_37_A08.b1_A029 Root flooded Pin... 89 2e-021
gb|DR072788.1|DR072788 RTDK1_28_D01.g1_A029 Roots, dark Pin... 62 3e-021
gb|CF670553.1|CF670553 RTCNT1_51_B03.b1_A029 Root control P... 88 3e-021
gb|BX255284.1|BX255284 BX255284 Pinus pinaster differenciat... 80 3e-021
gb|DR096724.1|DR096724 STRR1_29_H01.g1_A033 Stem Response R... 65 3e-021
gb|DR745804.1|DR745804 RTCU1_32_D10.g1_A029 Roots plus adde... 78 3e-021
gb|BG275211.1|BG275211 NXSI_138_A11_F NXSI (Nsf Xylem Side ... 65 5e-021
gb|DR051999.1|DR051999 RTCA1_1_F08.g1_A029 Roots minus calc... 90 6e-021
gb|CO369926.1|CO369926 RTK1_55_G02.b1_A029 Roots minus pota... 101 7e-021
gb|DR018056.1|DR018056 STRS1_20_E09.b1_A034 Shoot tip pitch... 101 7e-021
gb|CO161007.1|CO161007 FLD1_26_C01.b1_A029 Root flooded Pin... 66 8e-021
gb|CF392457.1|CF392457 RTDR3_6_C12.b1_A022 Loblolly pine ro... 88 9e-021
gb|BQ702373.1|BQ702373 NXSI_127_H09_F NXSI (Nsf Xylem Side ... 101 1e-020
gb|CF471539.1|CF471539 RTDS1_4_B06.b1_A015 Drought-stressed... 101 1e-020
gb|DR388213.1|DR388213 RTHG1_26_G06.g1_A029 Roots plus adde... 101 1e-020
>gb|DR091543.1|DR091543 RTAL1_22_H02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_H02_A029 3', mRNA sequence
Length = 828
Score = 194 bits (418), Expect(2) = 3e-053
Identities = 79/149 (53%), Positives = 101/149 (67%)
Frame = +1 / +1
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTKLPS 285
+C++WLD+QPPSSV+F+ FGSGG Q E+A GL+ S HRFLWVLR TP K
Sbjct: 7 DCLKWLDNQPPSSVLFVSFGSGGVLPKTQVTELALGLEASRHRFLWVLRSTPLRSFKSGE 186
Query: 286 DGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPM 465
+ +LLP F RT+D+GLV P+ APQ +L+H + GGF+ HCGWNS LES+ HGVPM
Sbjct: 187 KTDPLQLLPEGFEIRTRDQGLVVPSWAPQIPVLSHPSTGGFLCHCGWNSTLESISHGVPM 366
Query: 466 VPWPLGAEQHYNAFTLVADMGVAVALNVE 552
+ WPL AEQ N F LV + VA+ +E
Sbjct: 367 IAWPLFAEQRMNKFLLVNEFQVAIEAKME 453
Score = 35.4 bits (71), Expect(2) = 3e-053
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1 / +1
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE ++VR + E+K A A++EGGSS
Sbjct: 502 LMEGEGGKRVRARARELKEAANTALQEGGSS 594
>gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_55_B04_A029 5', mRNA sequence
Length = 790
Score = 125 bits (268), Expect(3) = 2e-051
Identities = 52/88 (59%), Positives = 62/88 (70%)
Frame = +1 / +3
Query: 280 PSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGV 459
PS+ NL+ LLP F RTKDRGLV + APQ ILAH + GGFV+HCGWNSVLES+W GV
Sbjct: 204 PSNPNLSALLPPGFEQRTKDRGLVVTSWAPQVSILAHPSTGGFVSHCGWNSVLESIWFGV 383
Query: 460 PMVPWPLGAEQHYNAFTLVADMGVAVAL 543
P + WPL A+Q + LV D +AV L
Sbjct: 384 PFIAWPLQADQRPVGYFLVNDSRIAVGL 467
Score = 77.6 bits (163), Expect(3) = 2e-051
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +1 / +3
Query: 58 IGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRF 237
+GP+I P + ++WLD+QP SSV+ + FGS + Q E+A GL+ SGHRF
Sbjct: 3 VGPLIVPPKPILEDLSGSLQWLDNQPASSVILVSFGSVNFLSGEQIGELALGLESSGHRF 182
Query: 238 LWVLRGTP 261
LW LRG P
Sbjct: 183 LWALRGHP 206
Score = 39.1 bits (79), Expect(3) = 2e-051
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1 / +3
Query: 553 RKRKNFVEATELERAVKALMCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSL 714
+KRK+ + E + DGE +K+ + E+K + A+ EGGSS+ +L
Sbjct: 468 QKRKDGIVTKEEVEKAARELMDGENGKKLTVRTKELKECAKAALAEGGSSSQAL 629
>gb|BQ106995.1|BQ106995 NXLV085_C09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_C09 5' similar to Arabidopsis thaliana
sequence At3g16520 glucosyltransferase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 638
Score = 199 bits (429), Expect = 3e-050
Identities = 83/181 (45%), Positives = 111/181 (61%)
Frame = +1 / +1
Query: 19 RCTRGVPAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAH 198
R R P PV S P+ + + +C+ WLD QPPSSV+F+ FGSGG Q
Sbjct: 43 RIPRVYPVGPVISSSPLESRDKLLQDRRVDCLDWLDQQPPSSVLFVSFGSGGALPKAQVT 222
Query: 199 EIAHGLDRSGHRFLWVLRGTPEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKE 378
EIA GL+ S HRFLWVLR +P+ + + +L++LLP F ++ +DRGLV P+ PQ
Sbjct: 223 EIAMGLEASRHRFLWVLRSSPQRVFQSSKETDLSQLLPEGFQSQNRDRGLVVPSWVPQVP 402
Query: 379 ILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAVALNVERK 558
+L+H ++GGF+ HCGWNS L S+ HGVPM+ WPL AEQ N F LV + V +E
Sbjct: 403 VLSHPSIGGFLCHCGWNSTLXSISHGVPMITWPLFAEQRLNKFLLVNEFKVXXETEMESD 582
Query: 559 R 561
R
Sbjct: 583 R 585
>gb|CO161650.1|CO161650 FLD1_30_F08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_F08_A029 3', mRNA sequence
Length = 851
Score = 111 bits (238), Expect(3) = 5e-050
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = +1 / -1
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GGF++HCGWNS LES+ HGVPM+ W
Sbjct: 569 ISQLLPMGFESRTQDRGLVVASWAPQIPVLSHPSTGGFLSHCGWNSTLESISHGVPMICW 390
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N LV + V ++ ++
Sbjct: 389 PLFAEQRMNRLLLVDEFKVGISAKMD 312
Score = 90.9 bits (192), Expect(3) = 5e-050
Identities = 38/78 (48%), Positives = 48/78 (61%)
Frame = +1 / -1
Query: 19 RCTRGVPAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAH 198
R R P P+ S P+ + P E +C++WLD QPPSSV+F+ FGSG Q
Sbjct: 842 RMPRFYPLGPLISSSPLEHNDKPVEDGGADCLKWLDKQPPSSVLFVSFGSGTGLPRVQVI 663
Query: 199 EIAHGLDRSGHRFLWVLR 252
E+A GL+ SGHRFLWVLR
Sbjct: 662 ELALGLEASGHRFLWVLR 609
Score = 34.5 bits (69), Expect(3) = 5e-050
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1 / -1
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE +VR +V E+K A A++EGGSS
Sbjct: 263 LMEGEGGMRVRARVKELKEAAVSALKEGGSS 171
>gb|CF393653.1|CF393653 RTDR3_15_B07.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_15_B07_A022 5', mRNA
sequence
Length = 778
Score = 194 bits (418), Expect = 9e-049
Identities = 79/149 (53%), Positives = 101/149 (67%)
Frame = +1 / +1
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTKLPS 285
+C++WLD+QPPSSV+F+ FGSGG Q E+A GL+ S HRFLWVLR TP K
Sbjct: 310 DCLKWLDNQPPSSVLFVSFGSGGVLPKTQVTELALGLEASRHRFLWVLRSTPLRSFKSGE 489
Query: 286 DGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPM 465
+ +LLP F RT+D+GLV P+ APQ +L+H + GGF+ HCGWNS LES+ HGVPM
Sbjct: 490 KTDPLQLLPEGFEIRTRDQGLVVPSWAPQIPVLSHPSTGGFLCHCGWNSTLESISHGVPM 669
Query: 466 VPWPLGAEQHYNAFTLVADMGVAVALNVE 552
+ WPL AEQ N F LV + VA+ +E
Sbjct: 670 IAWPLFAEQRMNKFLLVNEFQVAIEAKME 756
>gb|CF401719.1|CF401719 RTWW1_14_A04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_A04_A015 5', mRNA sequence
Length = 750
Score = 116 bits (249), Expect(3) = 1e-047
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +1 / +1
Query: 301 ELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPL 480
+LLP F +RT+D+GLV P+ APQ +L+H + GGF+ HCGWNS LES+ HGVPM+ WPL
Sbjct: 325 QLLPEGFESRTRDQGLVVPSWAPQIPVLSHTSTGGFLCHCGWNSTLESISHGVPMIAWPL 504
Query: 481 GAEQHYNAFTLVADMGVAVALNVE 552
AEQ N F LV + +A+ +E
Sbjct: 505 FAEQSTNRFLLVNEFKIAIEAKME 576
Score = 80.8 bits (170), Expect(3) = 1e-047
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +1 / +1
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
C+ WLD QPPSSV+F+ FGSGG + Q E+A GL+ S HRFLWVLR T
Sbjct: 133 CLDWLDKQPPSSVLFVSFGSGGALSEAQVTELALGLEASRHRFLWVLRST 282
Score = 61.1 bits (127), Expect(3) = 2e-022
Identities = 31/73 (42%), Positives = 34/73 (46%)
Frame = -3 / -2
Query: 521 SATSVNAL*CCSAPSGHGTIGTPCQRLSRTEFQPQCVTKPPTAAWASISFCGALVGHTSP 342
S TS N CSA G +GTPC+ LS EF PQ KPP GA G TSP
Sbjct: 545 SLTSKNLFVLCSAKRGQAIMGTPCEMLSSVEFHPQ*QRKPPVEV*ERTGI*GAHEGTTSP 366
Query: 341 LSFVLAKKSAGSS 303
S V +G S
Sbjct: 365 WSLVRLSNPSGKS 327
Score = 58.3 bits (121), Expect(3) = 2e-022
Identities = 24/47 (51%), Positives = 28/47 (59%)
Frame = -3 / -2
Query: 257 VPRSTHRNRCPLRSRPCAISCAWGAVKQPPLPKHRNTTELGGCESSQ 117
V R THR RC L S P A S W + + PPLP N T+ GGC S+Q
Sbjct: 281 VLRRTHRKRCRLASSPRASSVTWASDRAPPLPNETNRTDEGGCLSNQ 141
Score = 31.8 bits (63), Expect(3) = 1e-047
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / +1
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE +++R + E+K + A+E GGSS
Sbjct: 625 LMEGEGGKRLRARAQELKEKAKTALEAGGSS 717
Score = 24.4 bits (47), Expect(3) = 2e-022
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3 / -2
Query: 695 PPSSIAFRHAAFISMTLSLTFLAVSPS 615
PP+S A +F S L+L+ L SPS
Sbjct: 710 PPASSAVLAFSFNSCALALSLLPPSPS 630
>gb|DR057552.1|DR057552 RTNIT1_6_A10.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_A10_A029 5', mRNA sequence
Length = 812
Score = 115 bits (245), Expect(3) = 3e-047
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = +1 / +3
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GGF++HCGWNS LES+ HGVP++ W
Sbjct: 300 ISQLLPEGFESRTRDRGLVVASWAPQIHVLSHPSTGGFLSHCGWNSALESISHGVPIICW 479
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N L+ + VA+A +E
Sbjct: 480 PLFAEQKINRLLLIKEFKVAIAAKME 557
Score = 80.3 bits (169), Expect(3) = 3e-047
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +1 / +3
Query: 37 PAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGL 216
P P+ S P+ + E +C++WLD+QPPSSV+F+ FGS Q E+A GL
Sbjct: 45 PVGPLISSSPLQLNDELVENGRADCLKWLDNQPPSSVLFVSFGSAAGLPRAQVTELAMGL 224
Query: 217 DRSGHRFLWVLR 252
+ S HRFLWVLR
Sbjct: 225 EASQHRFLWVLR 260
Score = 32.7 bits (65), Expect(3) = 3e-047
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1 / +3
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE+ +VR + E+K A++EGGSS
Sbjct: 606 LMEGESGMRVRARARELKEKAMNALKEGGSS 698
>gb|DR019885.1|DR019885 STRS1_33_D06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_D06_A034 3', mRNA sequence
Length = 846
Score = 119 bits (255), Expect(3) = 2e-046
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = +1 / +3
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
S+ ++ LLP F RTKDRGLV + APQ ILAH + GGFV+HCGWNSVLES+ HGVP
Sbjct: 288 SNPEVSALLPPGFEQRTKDRGLVVTSWAPQVAILAHPSTGGFVSHCGWNSVLESVSHGVP 467
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
++ WPL AEQ AF LV D+ +A+
Sbjct: 468 IIAWPLQAEQRTTAFFLVNDIKMAI 542
Score = 74.4 bits (156), Expect(3) = 2e-046
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +1 / +3
Query: 22 CTRGVPAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHE 201
C+ + + S+ PV P P E ++WLD QP +SV+F+ FGS +A Q E
Sbjct: 39 CSGQIDGKRIPSVYPVGPLISPPEFDGSGSLQWLDKQPDASVLFVSFGSVNFLSAAQIVE 218
Query: 202 IAHGLDRSGHRFLWVLRGTP 261
+A GL+ SG RFLWVL P
Sbjct: 219 LALGLEGSGQRFLWVLPSPP 278
Score = 68.0 bits (142), Expect(2) = 1e-021
Identities = 34/75 (45%), Positives = 42/75 (56%)
Frame = -3 / -3
Query: 524 MSATSVNAL*CCSAPSGHGTIGTPCQRLSRTEFQPQCVTKPPTAAWASISFCGALVGHTS 345
MS T A+ CSA G +GTPC+ LS TEFQPQ +TKPP A ++ GA T
Sbjct: 529 MSLTRKKAVVLCSA*RGQAIMGTPCETLSSTEFQPQ*LTKPPVDG*AKMAT*GAHEVTTR 350
Query: 344 PLSFVLAKKSAGSSS 300
P S V K G+S+
Sbjct: 349 PRSLVRCSKPGGNSA 305
Score = 55.6 bits (115), Expect(2) = 1e-021
Identities = 28/64 (43%), Positives = 31/64 (48%)
Frame = -3 / -3
Query: 245 THRNRCPLRSRPCAISCAWGAVKQPPLPKHRNTTELGGCESSQRTHSCACCSAGGVEGIT 66
THR RCPL S P A S W A ++ LPK TE GC SS S G + G T
Sbjct: 262 THRKRCPLPSSPRASSTIWAADRKFTLPKETKRTEASGCLSSHCKLPLPSNSGGEMRGPT 83
Query: 65 GPIE 54
G E
Sbjct: 82 GYTE 71
Score = 31.3 bits (62), Expect(3) = 2e-046
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1 / +3
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSL 714
+ +GE +K + E++ + + A+ EGGSS+ +L
Sbjct: 606 LMEGEEGKKKTARARELRESAKAALAEGGSSSQAL 710
>gb|DR160864.1|DR160864 RTFE1_8_B03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_8_B03_A029 5', mRNA sequence
Length = 918
Score = 109 bits (232), Expect(3) = 5e-046
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +1 / +2
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GF++HCGWNS LES+ HGVPM+ W
Sbjct: 230 ISQLLPEGFESRTQDRGLVVSSWAPQIPVLSHPSTAGFLSHCGWNSTLESISHGVPMICW 409
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N LV + V + +E
Sbjct: 410 PLFAEQKMNRILLVDEFKVGIPAKME 487
Score = 78.5 bits (165), Expect(3) = 5e-046
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = +1 / +2
Query: 85 PAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
P E +C WLD QPPSSV+F FGSG Q E+A GL+ SGHRFLWVLR
Sbjct: 23 PVENGGTDCF*WLDKQPPSSVLFFSFGSGTGLPRAQVIELALGLEASGHRFLWVLR 190
Score = 54.2 bits (112), Expect(3) = 2e-021
Identities = 31/73 (42%), Positives = 35/73 (47%)
Frame = -3 / -1
Query: 521 SATSVNAL*CCSAPSGHGTIGTPCQRLSRTEFQPQCVTKPPTAAWASISFCGALVGHTSP 342
S+TS CSA SG IGTPC+ LS EFQPQ KP GA TSP
Sbjct: 456 SSTSRILFIFCSAKSGQQIIGTPCEMLSSVEFQPQ*ERKPAVDG*DRTGI*GAHEETTSP 277
Query: 341 LSFVLAKKSAGSS 303
S+V +G S
Sbjct: 276 RSWVRLSNPSGKS 238
Score = 52.4 bits (108), Expect(3) = 2e-021
Identities = 25/56 (44%), Positives = 29/56 (51%)
Frame = -3 / -1
Query: 251 RSTHRNRCPLRSRPCAISCAWGAVKQPPLPKHRNTTELGGCESSQRTHSCACCSAG 84
RSTHR RCPL S P A S + PLPK + T+ GGC S+ S S G
Sbjct: 189 RSTHRKRCPLASNPKASSIT*ALGRPVPLPKEKKRTDEGGCLSNH*KQSVPPFSTG 22
Score = 36.3 bits (73), Expect(3) = 5e-046
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1 / +2
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE+ +VR +V E+K A ++EEGGSS
Sbjct: 536 LMEGESGMRVRARVTELKEAAVSSLEEGGSS 628
Score = 33.6 bits (67), Expect(3) = 2e-021
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3 / -1
Query: 707 MFDDPPSSIAFRHAAFISMTLSLTFLAVSPS 615
+++ PPSS A+F S+TL+LT + +SPS
Sbjct: 633 LYELPPSSNELTAASFNSVTLALTLIPLSPS 541
>gb|CF394916.1|CF394916 RTDS2_8_F04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_F04_A021 5', mRNA sequence
Length = 816
Score = 114 bits (243), Expect(3) = 5e-046
Identities = 50/85 (58%), Positives = 58/85 (68%)
Frame = +1 / +2
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
S L LLP F RTKDRGLV + APQ ILAH + GG ++ CGWNSVLES+ HGVP
Sbjct: 200 SGPELRTLLPPGFEQRTKDRGLVVTSWAPQVAILAHPSTGGIISQCGWNSVLESVSHGVP 379
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
++ WPL AEQ AF LV D+ VAV
Sbjct: 380 IITWPLHAEQKTTAFLLVNDIQVAV 454
Score = 72.1 bits (151), Expect(3) = 5e-046
Identities = 29/50 (58%), Positives = 36/50 (72%)
Frame = +1 / +2
Query: 112 VRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTP 261
++WLD+QP SSV+F+ FGS G + Q E+A GLD SG RFLWVLR P
Sbjct: 44 LQWLDNQPASSVIFVSFGSLGFLSGEQIGELALGLDGSGQRFLWVLRNPP 193
Score = 37.7 bits (76), Expect(3) = 5e-046
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1 / +2
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSLQRL 723
+ +GE +K R++ E+K + + A+ EGGSS +LQ L
Sbjct: 518 LMEGEVGKKRRERAKELKQSAKAAVAEGGSSFHALQAL 631
>gb|CF394807.1|CF394807 RTDS2_7_F05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F05_A021 5', mRNA sequence
Length = 731
Score = 114 bits (243), Expect(3) = 5e-046
Identities = 50/85 (58%), Positives = 58/85 (68%)
Frame = +1 / +3
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
S L LLP F RTKDRGLV + APQ ILAH + GG ++ CGWNSVLES+ HGVP
Sbjct: 198 SGPELRTLLPPGFEQRTKDRGLVVTSWAPQVAILAHPSTGGIISQCGWNSVLESVSHGVP 377
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
++ WPL AEQ AF LV D+ VAV
Sbjct: 378 IITWPLHAEQKTTAFLLVNDIQVAV 452
Score = 72.1 bits (151), Expect(3) = 5e-046
Identities = 29/50 (58%), Positives = 36/50 (72%)
Frame = +1 / +3
Query: 112 VRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTP 261
++WLD+QP SSV+F+ FGS G + Q E+A GLD SG RFLWVLR P
Sbjct: 42 LQWLDNQPASSVIFVSFGSLGFLSGEQIGELALGLDGSGQRFLWVLRNPP 191
Score = 37.7 bits (76), Expect(3) = 5e-046
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1 / +3
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSLQRL 723
+ +GE +K R++ E+K + + A+ EGGSS +LQ L
Sbjct: 516 LMEGEVGKKRRERAKELKQSAKAAVAEGGSSFHALQAL 629
>gb|CF478552.1|CF478552 RTWW3_20_C12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_C12_A022 5', mRNA sequence
Length = 723
Score = 108 bits (231), Expect(2) = 8e-044
Identities = 42/86 (48%), Positives = 59/86 (68%)
Frame = +1 / +2
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GF++HCGWNS LES+ HGVPM+ W
Sbjct: 374 ISQLLPEGFESRTQDRGLVVSSWAPQIPVLSHPSTAGFLSHCGWNSTLESISHGVPMICW 553
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N L+ + V + +E
Sbjct: 554 PLFAEQKMNRILLIDEFKVGIPAKME 631
Score = 89.5 bits (189), Expect(2) = 8e-044
Identities = 37/75 (49%), Positives = 46/75 (61%)
Frame = +1 / +2
Query: 28 RGVPAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIA 207
R P P+ S P+ + P E +C+ WLD QPPSSV+F+ FGSG Q E+A
Sbjct: 110 RFYPVGPLISSSPLQHNDEPVENGGTDCLEWLDKQPPSSVLFVSFGSGTGLPRAQVIELA 289
Query: 208 HGLDRSGHRFLWVLR 252
GL+ SGHRFLWVLR
Sbjct: 290 LGLEASGHRFLWVLR 334
>gb|CO162822.1|CO162822 FLD1_37_F01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F01_A029 5', mRNA sequence
Length = 858
Score = 117 bits (251), Expect(2) = 3e-042
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = +1 / +2
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P + + + + ++LP F RT+DRGLV + APQ +L+H + GGF++HCGWNS +
Sbjct: 446 PRTESTMTAGAEMRDVLPEGFETRTEDRGLVVDSWAPQIGVLSHPSTGGFLSHCGWNSTI 625
Query: 439 ESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
ES+ HGVPM+ WPL AEQ NAF LV +M V +
Sbjct: 626 ESILHGVPMIAWPLFAEQRMNAFLLVKEMKVGI 724
Score = 75.3 bits (158), Expect(2) = 3e-042
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = +1 / +2
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ + C++WLD Q SSV+F+ FGS G + Q E+A GL+ SG RFLWVLR P P T+
Sbjct: 278 EKEGCLKWLDRQAASSVLFVAFGSRGTLSDNQIRELALGLEASGQRFLWVLRREPPPRTE 457
>gb|CF472330.1|CF472330 RTDS1_9_E09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_E09_A015 3', mRNA sequence
Length = 576
Score = 117 bits (251), Expect(2) = 3e-042
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = +1 / -1
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P + + + + ++LP F RT+DRGLV + APQ +L+H + GGF++HCGWNS +
Sbjct: 420 PRTESTMTAGAEMRDVLPEGFETRTEDRGLVVDSWAPQIGVLSHPSTGGFLSHCGWNSTI 241
Query: 439 ESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
ES+ HGVPM+ WPL AEQ NAF LV +M V +
Sbjct: 240 ESILHGVPMIAWPLFAEQRMNAFLLVKEMKVGI 142
Score = 74.8 bits (157), Expect(2) = 3e-042
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +1 / -1
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
C++WLD Q SSV+F+ FGS G + Q E+A GL+ SG RFLWVLR P P T+
Sbjct: 576 CLKWLDRQAASSVLFVAFGSRGTLSDNQIRELALGLEASGQRFLWVLRREPPPRTE 409
>gb|BX680435.1|BX680435 BX680435 RS Pinus pinaster cDNA clone RS43D10, mRNA sequence
Length = 610
Score = 117 bits (251), Expect(2) = 5e-042
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +1 / +2
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
++ +++ LLP F +RT+DRGLV P+ APQ +L+H + GGF++HCGWNS +ES+ HGVP
Sbjct: 290 AEADISHLLPEGFESRTRDRGLVVPSWAPQIPVLSHPSTGGFLSHCGWNSSIESILHGVP 469
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
M+ WP+ AEQ NA LV + VA+
Sbjct: 470 MIAWPIFAEQRMNAIFLVEEKQVAI 544
Score = 74.4 bits (156), Expect(2) = 5e-042
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1 / +2
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
+C++WLD QP SSV+F+ FGS G + Q E+A GL+ SG RF+W LRG+
Sbjct: 116 QCLKWLDHQPASSVLFVAFGSKGTLSDDQVRELALGLEASGQRFIWALRGS 268
>gb|DR386533.1|DR386533 RTHG1_15_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_15_G09_A029 5', mRNA sequence
Length = 773
Score = 109 bits (232), Expect(3) = 3e-041
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +1 / +2
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GF++HCGWNS LES+ HGVPM+ W
Sbjct: 164 ISQLLPEGFESRTQDRGLVVSSWAPQIPVLSHPSTAGFLSHCGWNSTLESISHGVPMICW 343
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N LV + V + +E
Sbjct: 344 PLFAEQKMNRILLVDEFKVGIPAKME 421
Score = 62.5 bits (130), Expect(3) = 3e-041
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +1 / +2
Query: 130 QPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
QPPSSV+F+ FGSG Q E+A GL+ SGHRFLWVLR
Sbjct: 2 QPPSSVLFVSFGSGTGLPRAQVIELALGLEASGHRFLWVLR 124
Score = 36.3 bits (73), Expect(3) = 3e-041
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1 / +2
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE+ +VR +V E+K A ++EEGGSS
Sbjct: 470 LMEGESGMRVRARVTELKEAAVSSLEEGGSS 562
>gb|DR694987.1|DR694987 EST1085080 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ19 3' end, mRNA sequence
Length = 809
Score = 113 bits (242), Expect(2) = 6e-041
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +1 / +1
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
++ +++ LLP F +RT+DRGLV P+ APQ +L+H + GGF++HCGWNS +ES+ HGVP
Sbjct: 391 AEADISHLLPEGFESRTRDRGLVVPSWAPQIPVLSHPSTGGFLSHCGWNSSIESILHGVP 570
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
M+ WP+ EQ NA LV VA+
Sbjct: 571 MIAWPIFGEQRMNAIFLVEANQVAI 645
Score = 74.8 bits (157), Expect(2) = 6e-041
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1 / +1
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
+C++WLD QP SSV+F+ FGS G + Q E+A GL+ SG RF+W LRG+
Sbjct: 217 QCLKWLDQQPASSVLFVAFGSKGTLSDDQVRELALGLEASGQRFIWALRGS 369
>gb|DT638838.1|DT638838 EST1153769 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK08 3' end, mRNA sequence
Length = 743
Score = 113 bits (242), Expect(2) = 6e-041
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +1 / +3
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
++ +++ LLP F +RT+DRGLV P+ APQ +L+H + GGF++HCGWNS +ES+ HGVP
Sbjct: 399 AEADISHLLPEGFESRTRDRGLVVPSWAPQIPVLSHPSTGGFLSHCGWNSSIESILHGVP 578
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
M+ WP+ EQ NA LV VA+
Sbjct: 579 MIAWPIFGEQRMNAIFLVEANQVAI 653
Score = 74.8 bits (157), Expect(2) = 6e-041
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
+C++WLD QP SSV+F+ FGS G + Q E+A GL+ SG RF+W LRG+
Sbjct: 225 QCLKWLDQQPASSVLFVAFGSKGTLSDDQVRELALGLEASGQRFIWALRGS 377
>gb|DR088632.1|DR088632 RTAL1_3_G06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_G06_A029 3', mRNA sequence
Length = 525
Score = 113 bits (242), Expect(2) = 6e-041
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +1 / -2
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
++ +++ LLP F +RT+DRGLV P+ APQ +L+H + GGF++HCGWNS +ES+ HGVP
Sbjct: 308 AEADISHLLPEGFESRTRDRGLVVPSWAPQIPVLSHPSTGGFLSHCGWNSSIESILHGVP 129
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
M+ WP+ EQ NA LV VA+
Sbjct: 128 MIAWPIFGEQRMNAIFLVEANQVAI 54
Score = 74.8 bits (157), Expect(2) = 6e-041
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1 / -2
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
+C++WLD QP SSV+F+ FGS G + Q E+A GL+ SG RF+W LRG+
Sbjct: 482 QCLKWLDQQPASSVLFVAFGSKGTLSDDQVRELALGLEASGQRFIWALRGS 330
>gb|BX681374.1|BX681374 BX681374 RS Pinus pinaster cDNA clone RS58A01, mRNA sequence
Length = 637
Score = 118 bits (252), Expect(3) = 2e-040
Identities = 44/93 (47%), Positives = 65/93 (69%)
Frame = +1 / +1
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P P ++ +++ LLP F +RT+DRGLV P+ APQ +L+H + GGF++HCGWNS +
Sbjct: 130 PAPIEPTTAEADISHLLPEGFESRTRDRGLVVPSWAPQTPVLSHPSTGGFLSHCGWNSSI 309
Query: 439 ESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
ES+ HG+PM+ WP+ +EQ NA LV + VA+
Sbjct: 310 ESILHGLPMIAWPIFSEQRMNAIFLVEEKQVAI 408
Score = 58.3 bits (121), Expect(3) = 2e-040
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 130 QPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRG 255
QP SSV+F+ FGS G + Q E+A GL+ SG RF+W LRG
Sbjct: 4 QPASSVLFVAFGSEGTLSDDQVRELALGLETSGQRFIWALRG 129
Score = 28.1 bits (55), Expect(3) = 2e-040
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1 / +1
Query: 553 RKRKNFVEATELERAVKALMCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSLQRL 723
+K N + + E V + +GE+ + + ++ E+ A+ EGGSS ++ L
Sbjct: 415 KKGPNGLVSKEEVERVVRELMEGESGVETKKRMKELMQTAHNAISEGGSSYNTMATL 585
>gb|CF474429.1|CF474429 RTWW2_20_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_20_F05_A021 5', mRNA sequence
Length = 715
Score = 106 bits (227), Expect(2) = 4e-040
Identities = 40/83 (48%), Positives = 56/83 (67%)
Frame = +1 / +3
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P + + + + ++LP F RT+DRG V + APQ +L+H + GGF++HCGWNS +
Sbjct: 462 PPTESTMTAGAEMRDVLPEGFETRTEDRGFVVDSWAPQIAVLSHPSTGGFLSHCGWNSTI 641
Query: 439 ESLWHGVPMVPWPLGAEQHYNAF 507
ES+ HGVPM+ WPL AEQ NAF
Sbjct: 642 ESILHGVPMIAWPLFAEQKTNAF 710
Score = 79.0 bits (166), Expect(2) = 4e-040
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +1 / +3
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ + C++WLD QP SSV+F+ FGS G + Q E+A GL+ SG RFLWVLR P P T+
Sbjct: 294 EKEGCLKWLDRQPASSVLFVSFGSRGTLSENQIRELALGLEASGQRFLWVLRREPPPPTE 473
>gb|DR111145.1|DR111145 RTS1_15_D11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_15_D11_A029 5', mRNA sequence
Length = 829
Score = 117 bits (251), Expect(2) = 2e-038
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = +1 / -2
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P + + + + ++LP F RT+DRGLV + APQ +L+H + GGF++HCGWNS +
Sbjct: 687 PRTESTMTAGAEMRDVLPEGFETRTEDRGLVVDSWAPQIGVLSHPSTGGFLSHCGWNSTI 508
Query: 439 ESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
ES+ HGVPM+ WPL AEQ NAF LV +M V +
Sbjct: 507 ESILHGVPMIAWPLFAEQRMNAFLLVKEMKVGI 409
Score = 62.5 bits (130), Expect(2) = 2e-038
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +1 / -2
Query: 124 DSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
D Q SSV+F+ FGS G + Q E+A GL+ SG RFLWVLR P P T+
Sbjct: 828 DRQAASSVLFVAFGSRGTLSDNQIRELALGLEASGQRFLWVLRREPPPRTE 676
>gb|DR177492.1|DR177492 RTMNUT1_5_D07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_D07_A029 5', mRNA sequence
Length = 727
Score = 114 bits (243), Expect(3) = 5e-036
Identities = 50/85 (58%), Positives = 58/85 (68%)
Frame = +1 / +3
Query: 283 SDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 462
S L LLP F RTKDRGLV + APQ ILAH + GG ++ CGWNSVLES+ HGVP
Sbjct: 105 SGPELRTLLPPGFEQRTKDRGLVVTSWAPQVAILAHPSTGGIISQCGWNSVLESVSHGVP 284
Query: 463 MVPWPLGAEQHYNAFTLVADMGVAV 537
++ WPL AEQ AF LV D+ VAV
Sbjct: 285 IITWPLHAEQKTTAFLLVNDIQVAV 359
Score = 40.9 bits (83), Expect(3) = 5e-036
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1 / +3
Query: 172 GCFTAPQAHEIAHGLDRSGHRFLWVLRGTP 261
G + Q E+A GLD SG RFLWVLR P
Sbjct: 9 GFLSGEQIGELALGLDGSGQRFLWVLRNPP 98
Score = 35.0 bits (70), Expect(3) = 5e-036
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1 / +3
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSLQRL 723
+ +GE +K R++ +K + + A+ EGGSS +LQ L
Sbjct: 423 LMEGEVGKKRRERAKALKRSAKAAVAEGGSSFHALQAL 536
>gb|BG039597.1|BG039597 NXSI_100_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_100_H07 5' similar to Arabidopsis thaliana
sequence At3g16520 glucosyltransferase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 492
Score = 90.4 bits (191), Expect(2) = 9e-036
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = +1 / +2
Query: 301 ELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPL 480
+LLP F +RT+D+GLV P+ APQ +L+H + G F+ HCG S LES+ HGVPM+ L
Sbjct: 227 QLLPEGFESRTRDQGLVVPSWAPQIPVLSHTSTGSFLCHCGXXSTLESISHGVPMIAXXL 406
Query: 481 GAEQHYNAFTLVADMGVAV 537
AEQ N LV + +A+
Sbjct: 407 FAEQSTNXXLLVNEFKIAI 463
Score = 80.8 bits (170), Expect(2) = 9e-036
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +1 / +2
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
C+ WLD QPPSSV+F+ FGSGG + Q E+A GL+ S HRFLWVLR T
Sbjct: 35 CLDWLDKQPPSSVLFVSFGSGGALSEAQVTELALGLEASRHRFLWVLRST 184
>gb|DR098127.1|DR098127 STRR1_39_F11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_F11_A033 3', mRNA sequence
Length = 709
Score = 95.5 bits (202), Expect(3) = 2e-035
Identities = 40/78 (51%), Positives = 53/78 (67%)
Frame = +1 / +2
Query: 304 LLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLG 483
++P F R K RGLV APQ IL+H +VG F++HCGWNS LES+ GVPM+ WP+
Sbjct: 236 VIPQGFEERMKGRGLVIRGWAPQLLILSHPSVGAFLSHCGWNSTLESITLGVPMITWPMS 415
Query: 484 AEQHYNAFTLVADMGVAV 537
A+Q+ +A LV + VAV
Sbjct: 416 ADQYIDALLLVDYLKVAV 469
Score = 68.0 bits (142), Expect(3) = 2e-035
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +1 / +2
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTP 261
C++WLDS+ SV+++CFGS C + Q E+A GL+ S F+WV+R P
Sbjct: 56 CLQWLDSRKEKSVIYICFGSQACLSNKQIQEMAEGLEASEESFIWVIRDPP 208
Score = 24.9 bits (48), Expect(3) = 2e-035
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 655 EIKAACRKAMEEGGSSNMSLQ 717
E+ A ++A++EGGSS +++
Sbjct: 572 ELSRAAKRAVQEGGSSYKNME 634
>gb|CF478562.1|CF478562 RTWW3_20_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_A12_A022 5', mRNA sequence
Length = 742
Score = 103 bits (220), Expect(2) = 2e-035
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +1 / +2
Query: 307 LPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGA 486
LP F RT+DRGL+ APQ IL+H ++G F++HCGWNS LESL G+PM+ WP+ A
Sbjct: 209 LPEGFEERTRDRGLIIWGWAPQLFILSHPSIGAFLSHCGWNSALESLSMGIPMITWPMFA 388
Query: 487 EQHYNAFTLVADMGVAVAL 543
+Q YN+ L MGVA+ +
Sbjct: 389 DQRYNSKLLEEHMGVAIRI 445
Score = 66.6 bits (139), Expect(2) = 2e-035
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +1 / +2
Query: 88 AEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
A+ +EC+RWLDS+PP SVVF+C GS Q +A GL+ SG F+W ++
Sbjct: 2 ADIDEEECLRWLDSRPPQSVVFVCLGSQFILNDKQICALATGLEASGQAFVWAIK 166
>gb|DR101617.1|DR101617 STRR1_74_C11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C11_A033 5', mRNA sequence
Length = 717
Score = 88.1 bits (186), Expect(2) = 4e-035
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = +1 / +2
Query: 31 GVPAPPVYSIGPVIPSTPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAH 210
G+ P ++++GP+I P + ++WLD+QP SSV+ + FGS + Q E+A
Sbjct: 335 GIRMPSIHAVGPLIAPPKPILEDPSGSLQWLDNQPASSVILVSFGSVNFLSGEQIGELAL 514
Query: 211 GLDRSGHRFLWVLRGTP 261
GL+ SGHRFLWVLRG P
Sbjct: 515 GLESSGHRFLWVLRGHP 565
Score = 80.8 bits (170), Expect(2) = 4e-035
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +1 / +2
Query: 280 PSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNS 432
PS+ NL+ LLP F RTKDRGLV + APQ ILAH + GGFV+HCGWNS
Sbjct: 563 PSNPNLSALLPPGFEQRTKDRGLVVTSWAPQVSILAHPSTGGFVSHCGWNS 715
>gb|CO161727.1|CO161727 FLD1_30_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_F08_A029 5', mRNA sequence
Length = 842
Score = 111 bits (238), Expect(3) = 1e-034
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = +1 / -3
Query: 295 LAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPW 474
+++LLP F +RT+DRGLV + APQ +L+H + GGF++HCGWNS LES+ HGVPM+ W
Sbjct: 714 ISQLLPMGFESRTQDRGLVVASWAPQIPVLSHPSTGGFLSHCGWNSTLESISHGVPMICW 535
Query: 475 PLGAEQHYNAFTLVADMGVAVALNVE 552
PL AEQ N LV + V ++ ++
Sbjct: 534 PLFAEQRMNRLLLVDEFKVGISAKMD 457
Score = 39.1 bits (79), Expect(3) = 1e-034
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / -3
Query: 166 SGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
SG Q E+A GL+ SGHRFLWVLR
Sbjct: 840 SGTGLPRVQVIELALGLEASGHRFLWVLR 754
Score = 34.5 bits (69), Expect(3) = 1e-034
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1 / -3
Query: 610 MCDGETARKVRDKVMEIKAACRKAMEEGGSS 702
+ +GE +VR +V E+K A A++EGGSS
Sbjct: 408 LMEGEGGMRVRARVKELKEAAVSALKEGGSS 316
>gb|DR015214.1|DR015214 STRS1_2_D11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_D11_A034 3', mRNA sequence
Length = 839
Score = 100 bits (213), Expect(2) = 3e-034
Identities = 42/96 (43%), Positives = 61/96 (63%)
Frame = +1 / +1
Query: 337 DRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLV 516
++G + APQ ILAH A GGF+ HCGWN+VLE+ GVPM+ WPL AEQH+N+ +V
Sbjct: 265 EQGFIILGWAPQLSILAHPATGGFLFHCGWNAVLETTTMGVPMIAWPLYAEQHFNSKFVV 444
Query: 517 ADMGVAVALNVERKRKNFVEATELERAVKALMCDGE 624
++ +A+ + V +++R VKALM + E
Sbjct: 445 DEIQIAIEAPQRIDQNWLVTREDVQRIVKALMAEEE 552
Score = 65.7 bits (137), Expect(2) = 3e-034
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +1 / +1
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+C+ WLD+Q +SV+++ FGS + Q E+A GL+ SG +FLWVLR + G+K
Sbjct: 34 KCLEWLDAQVEASVLYISFGSENSISIAQTEELAMGLEGSGVKFLWVLRRPSDSGSK 204
>gb|DR021519.1|DR021519 STRS1_45_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_45_E08_A034 3', mRNA sequence
Length = 820
Score = 101 bits (215), Expect(2) = 3e-034
Identities = 41/87 (47%), Positives = 58/87 (66%)
Frame = +1 / +2
Query: 364 APQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAVAL 543
APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQH+N+ +V ++ +A+
Sbjct: 278 APQLSILAHPATGGFLSHCGWNAVLETTTMGVPMIAWPLYAEQHFNSKFVVDEIQIAIEA 457
Query: 544 NVERKRKNFVEATELERAVKALMCDGE 624
+ V +++R VKALM + E
Sbjct: 458 PQRIDQNWLVTREDVQRIVKALMAEEE 538
Score = 64.8 bits (135), Expect(2) = 3e-034
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1 / +2
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+C+ WLD+Q +SV+++ FGS + Q E+A GL+ SG +FLWV+R + G+K
Sbjct: 20 KCLEWLDAQVEASVLYISFGSENSISIAQTEELAMGLEASGVKFLWVVRKPSDSGSK 190
>gb|DT626044.1|DT626044 EST1157968 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA647 5' end, mRNA sequence
Length = 967
Score = 100 bits (212), Expect(2) = 7e-034
Identities = 40/85 (47%), Positives = 57/85 (67%)
Frame = +1 / +3
Query: 364 APQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAVAL 543
APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQH+N+ +V ++ +A+
Sbjct: 657 APQLSILAHPATGGFLSHCGWNAVLETTTMGVPMIAWPLYAEQHFNSKFVVDEIQIAIEA 836
Query: 544 NVERKRKNFVEATELERAVKALMCD 618
+ V +++R VKALM +
Sbjct: 837 PQRIDQNWLVTREDVQRIVKALMAE 911
Score = 64.8 bits (135), Expect(2) = 7e-034
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+C+ WLD+Q +SV+++ FGS + Q E+A GL+ SG +FLWV+R + G+K
Sbjct: 399 KCLEWLDAQVEASVLYISFGSENSISIAQTEELAMGLEASGVKFLWVVRKPSDSGSK 569
>gb|BQ702864.1|BQ702864 NXSI_133_F03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_133_F03 5' similar to Arabidopsis thaliana
sequence At1g01390 flavonol 3-o-glucosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 405
Score = 144 bits (310), Expect = 7e-034
Identities = 60/116 (51%), Positives = 76/116 (65%)
Frame = +1 / +2
Query: 190 QAHEIAHGLDRSGHRFLWVLRGTPEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAP 369
Q E+A GL+ S HRFLWVLR TP K + +LLP F RT+D+GLV P+ AP
Sbjct: 17 QVTELALGLEASRHRFLWVLRSTPLRSFKSGEKTDPLQLLPEGFEIRTRDQGLVVPSWAP 196
Query: 370 QKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
Q +L+H + GGF+ HCGWNS LES+ HGVPM+ WPL AEQ N F L+ + A+
Sbjct: 197 QIPVLSHPSTGGFLCHCGWNSTLESISHGVPMIAWPLFAEQRMNKFLLINEXXXAI 364
>gb|CV134986.1|CV134986 EST846195 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCI10 5' end, mRNA sequence
Length = 906
Score = 99.1 bits (210), Expect(2) = 1e-033
Identities = 40/83 (48%), Positives = 56/83 (67%)
Frame = +1 / +3
Query: 364 APQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAVAL 543
APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQH+N+ +V ++ +A+
Sbjct: 657 APQLSILAHPATGGFLSHCGWNAVLETTTMGVPMIAWPLYAEQHFNSKFVVDEIQIAIEA 836
Query: 544 NVERKRKNFVEATELERAVKALM 612
+ V +++R VKALM
Sbjct: 837 PQRIDQNWLVTREDVQRIVKALM 905
Score = 64.8 bits (135), Expect(2) = 1e-033
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+C+ WLD+Q +SV+++ FGS + Q E+A GL+ SG +FLWV+R + G+K
Sbjct: 399 KCLEWLDAQVEASVLYISFGSENSISIAQTEELAMGLEASGVKFLWVVRKPSDSGSK 569
>gb|CO363000.1|CO363000 RTK1_7_B10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_B10_A029 3', mRNA sequence
Length = 710
Score = 90.4 bits (191), Expect(3) = 6e-033
Identities = 39/80 (48%), Positives = 52/80 (65%)
Frame = +1 / +3
Query: 304 LLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLG 483
+LP F +R +RG+V + PQ IL+H AVG FV+HCGWNSV+ES+ GVP+V WPL
Sbjct: 174 VLPPGFESRLGNRGMVVSSWVPQVRILSHGAVGAFVSHCGWNSVVESVCCGVPIVAWPLF 353
Query: 484 AEQHYNAFTLVADMGVAVAL 543
+Q NA +V V V +
Sbjct: 354 GDQMMNARLVVEFAKVGVEI 413
Score = 54.7 bits (113), Expect(3) = 6e-033
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +1 / +3
Query: 121 LDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
LD QP SVV++ FGS + Q E+A GL+ SG RFLWVL+
Sbjct: 3 LDLQPARSVVYVSFGSRSAMSISQIAELATGLEGSGQRFLWVLK 134
Score = 34.5 bits (69), Expect(3) = 6e-033
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1 / +3
Query: 553 RKRKNFVEATELERAVKALMCDGETARKVRDKVMEIKAACRKAMEEGGSSNMSLQR 720
++R + + + E + + D E ++R K +++ RKA+ EGGSS SLQ+
Sbjct: 414 KRRGDGIVSAEEVKIAMNCIMDLEEGLELRKKAADLEELGRKAVTEGGSSQNSLQQ 581
>gb|DR019261.1|DR019261 STRS1_28_F11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_F11_A034 5', mRNA sequence
Length = 835
Score = 94.5 bits (200), Expect(2) = 7e-033
Identities = 41/95 (43%), Positives = 59/95 (62%)
Frame = +1 / +3
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 315 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 494
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALMCD 618
V ++ +A+ + V ++ER VK LM +
Sbjct: 495 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLMME 599
Score = 67.0 bits (140), Expect(2) = 7e-033
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1 / +3
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ ++C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 78 EEEKCLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 257
>gb|CO172600.1|CO172600 NDL1_30_E11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_E11_A029 5', mRNA sequence
Length = 820
Score = 94.5 bits (200), Expect(2) = 7e-033
Identities = 41/95 (43%), Positives = 59/95 (62%)
Frame = +1 / +1
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 328 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 507
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALMCD 618
V ++ +A+ + V ++ER VK LM +
Sbjct: 508 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLMME 612
Score = 67.0 bits (140), Expect(2) = 7e-033
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1 / +1
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ ++C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 91 EEEKCLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 270
>gb|DR019177.1|DR019177 STRS1_28_F11.b2_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_F11_A034 3', mRNA sequence
Length = 792
Score = 94.5 bits (200), Expect(2) = 7e-033
Identities = 41/95 (43%), Positives = 59/95 (62%)
Frame = +1 / +3
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 258 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 437
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALMCD 618
V ++ +A+ + V ++ER VK LM +
Sbjct: 438 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLMME 542
Score = 67.0 bits (140), Expect(2) = 7e-033
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1 / +3
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ ++C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 21 EEEKCLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 200
>gb|CF387087.1|CF387087 RTDR1_10_C07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_C07_A015 5', mRNA
sequence
Length = 679
Score = 94.5 bits (200), Expect(2) = 7e-033
Identities = 41/95 (43%), Positives = 59/95 (62%)
Frame = +1 / +3
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 363 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 542
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALMCD 618
V ++ +A+ + V ++ER VK LM +
Sbjct: 543 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLMME 647
Score = 67.0 bits (140), Expect(2) = 7e-033
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1 / +3
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ ++C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 126 EEEKCLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 305
>gb|CV033205.1|CV033205 RTNACL1_33_B10.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_B10_A029 3', mRNA sequence
Length = 834
Score = 94.1 bits (199), Expect(2) = 9e-033
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / -2
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 284 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 105
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALM 612
V ++ +A+ + V ++ER VK LM
Sbjct: 104 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLM 6
Score = 67.0 bits (140), Expect(2) = 9e-033
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1 / -2
Query: 97 QAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
+ ++C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 521 EEEKCLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 342
>gb|CF385056.1|CF385056 RTDR1_1_E08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_E08_A015 5', mRNA
sequence
Length = 718
Score = 93.6 bits (198), Expect(3) = 2e-032
Identities = 41/82 (50%), Positives = 52/82 (63%)
Frame = +1 / +3
Query: 298 AELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWP 477
AELLP + R + R L+ APQ ILAH A G F+THCGWNS LES++ GVPM+ P
Sbjct: 288 AELLPEGYEKRVEGRCLIETGWAPQAAILAHEATGAFITHCGWNSALESVFAGVPMIALP 467
Query: 478 LGAEQHYNAFTLVADMGVAVAL 543
L ++Q NA L + VAV +
Sbjct: 468 LQSDQPGNALLLAREAKVAVEM 533
Score = 60.6 bits (126), Expect(3) = 2e-032
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
E + WLD Q P SVV+L FG+ + Q E+A GL+ SG FLWVLR
Sbjct: 84 EILEWLDRQSPGSVVYLSFGTESYISPAQVTELALGLEASGQPFLWVLR 230
Score = 24.0 bits (46), Expect(3) = 2e-032
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 526 GVAVALNVERKRKNFVEATELERAVKAL 609
GVA VER + + A E++R VKAL
Sbjct: 546 GVAEKDVVERAVRYLMAAEEMKRRVKAL 629
>gb|CF386347.1|CF386347 RTDR1_13_F04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_13_F04_A015 5', mRNA
sequence
Length = 649
Score = 93.6 bits (198), Expect(3) = 2e-032
Identities = 41/82 (50%), Positives = 52/82 (63%)
Frame = +1 / +3
Query: 298 AELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWP 477
AELLP + R + R L+ APQ ILAH A G F+THCGWNS LES++ GVPM+ P
Sbjct: 282 AELLPEGYEKRVEGRCLIETGWAPQAAILAHEATGAFITHCGWNSALESVFAGVPMIALP 461
Query: 478 LGAEQHYNAFTLVADMGVAVAL 543
L ++Q NA L + VAV +
Sbjct: 462 LQSDQPGNALLLAREAKVAVEM 527
Score = 60.6 bits (126), Expect(3) = 2e-032
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
E + WLD Q P SVV+L FG+ + Q E+A GL+ SG FLWVLR
Sbjct: 78 EILEWLDRQSPGSVVYLSFGTESYISPAQVTELALGLEASGQPFLWVLR 224
Score = 24.0 bits (46), Expect(3) = 2e-032
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 526 GVAVALNVERKRKNFVEATELERAVKAL 609
GVA VER + + A E++R VKAL
Sbjct: 540 GVAEKDVVERAVRYLMAAEEMKRRVKAL 623
>gb|CF472392.1|CF472392 RTDS1_9_E09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_E09_A015 5', mRNA sequence
Length = 819
Score = 117 bits (251), Expect(2) = 2e-032
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = +1 / -2
Query: 259 PEPGTKLPSDGNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVL 438
P + + + + ++LP F RT+DRGLV + APQ +L+H + GGF++HCGWNS +
Sbjct: 740 PRTESTMTAGAEMRDVLPEGFETRTEDRGLVVDSWAPQIGVLSHPSTGGFLSHCGWNSTI 561
Query: 439 ESLWHGVPMVPWPLGAEQHYNAFTLVADMGVAV 537
ES+ HGVPM+ WPL AEQ NAF LV +M V +
Sbjct: 560 ESILHGVPMIAWPLFAEQRMNAFLLVKEMKVGI 462
Score = 42.3 bits (86), Expect(2) = 2e-032
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1 / -2
Query: 190 QAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
Q E+A GL+ SG RFLWVLR P P T+
Sbjct: 815 QIRELALGLEASGQRFLWVLRREPPPRTE 729
>gb|CO413944.1|CO413944 EST844329 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMH59 5' end, mRNA sequence
Length = 923
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +3
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 288 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 467
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 468 CWPMAGEQFLNAKWFVEQLRVAV 536
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +3
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 87 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 266
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 267 PETENERGSSQSL 305
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 30 PVWTVGPVLP 59
>gb|DN447754.1|DN447754 EST943553 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBW81 5' end, mRNA sequence
Length = 902
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +1
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 301 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 480
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 481 CWPMAGEQFLNAKWFVEQLRVAV 549
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +1
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 100 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 279
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 280 PETENERGSSQSL 318
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 43 PVWTVGPVLP 72
>gb|DT624388.1|DT624388 EST1158663 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAE09 5' end, mRNA sequence
Length = 902
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +1
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 301 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 480
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 481 CWPMAGEQFLNAKWFVEQLRVAV 549
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +1
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 100 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 279
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 280 PETENERGSSQSL 318
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 43 PVWTVGPVLP 72
>gb|CO410810.1|CO410810 EST841195 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALC10 5' end, mRNA sequence
Length = 898
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +1
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 301 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 480
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 481 CWPMAGEQFLNAKWFVEQLRVAV 549
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +1
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 100 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 279
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 280 PETENERGSSQSL 318
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 43 PVWTVGPVLP 72
>gb|CO410963.1|CO410963 EST841348 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALE04 5' end, mRNA sequence
Length = 890
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +1
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 301 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 480
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 481 CWPMAGEQFLNAKWFVEQLRVAV 549
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +1
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 100 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 279
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 280 PETENERGSSQSL 318
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 43 PVWTVGPVLP 72
>gb|CO413888.1|CO413888 EST844273 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMG85 5' end, mRNA sequence
Length = 847
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1 / +1
Query: 289 GNLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMV 468
G+ LLP F T RGLV APQ IL+H + G F++HCGWNS+LES+ G+P++
Sbjct: 301 GSSQSLLPEGFERDTSGRGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPII 480
Query: 469 PWPLGAEQHYNAFTLVADMGVAV 537
WP+ EQ NA V + VAV
Sbjct: 481 CWPMAGEQFLNAKWFVEQLRVAV 549
Score = 62.5 bits (130), Expect(3) = 2e-032
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +1 / +1
Query: 79 TPPAEQQAQECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGT 258
T P ++ WL+ Q P SVV++ FGS + Q E+A GL SG F+WVLR
Sbjct: 100 TTPLDRGEASISEWLNQQAPGSVVYVSFGSRNFLSDAQIRELAFGLQGSGKSFIWVLRTP 279
Query: 259 PEPGTKLPSDGNL 297
PE + S +L
Sbjct: 280 PETENERGSSQSL 318
Score = 22.6 bits (43), Expect(3) = 2e-032
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 46 PVYSIGPVIP 75
PV+++GPV+P
Sbjct: 43 PVWTVGPVLP 72
>gb|CF667004.1|CF667004 RTCNT1_27_C11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_C11_A029 5', mRNA sequence
Length = 801
Score = 94.5 bits (200), Expect(2) = 2e-032
Identities = 41/95 (43%), Positives = 59/95 (62%)
Frame = +1 / +1
Query: 334 KDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPLGAEQHYNAFTL 513
K +G + APQ ILAH A GGF++HCGWN+VLE+ GVPM+ WPL AEQ +N+ +
Sbjct: 226 KKQGFIILGWAPQLSILAHPATGGFMSHCGWNAVLETTTMGVPMIAWPLYAEQPFNSKFV 405
Query: 514 VADMGVAVALNVERKRKNFVEATELERAVKALMCD 618
V ++ +A+ + V ++ER VK LM +
Sbjct: 406 VDEIQIALEAPQRIDQNWLVTRDDVERIVKLLMME 510
Score = 65.2 bits (136), Expect(2) = 2e-032
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +1 / +1
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLRGTPEPGTK 276
C+ WLD+Q +SV+++ FGS ++ Q E+A GL+ SG +F+WVLR + G+K
Sbjct: 1 CLEWLDAQREASVLYISFGSENSISSAQIEELAMGLEASGTKFVWVLRTPSDTGSK 168
>gb|DR181918.1|DR181918 RTMNUT1_41_F12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_41_F12_A029 5', mRNA sequence
Length = 823
Score = 101 bits (215), Expect(2) = 8e-032
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +1 / +3
Query: 301 ELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWPL 480
++LP F R + GL+ APQ IL+H + GGF++HCGWNS +ES+ HGVP++ WP+
Sbjct: 522 DMLPEGFEDRIEGLGLIIRGWAPQLLILSHPSTGGFLSHCGWNSTVESIGHGVPILAWPI 701
Query: 481 GAEQHYNAFTLVADMGVAVALN 546
+QHYNA LV D+ +A ++
Sbjct: 702 RGDQHYNAKLLVKDLQIAAMID 767
Score = 56.5 bits (117), Expect(2) = 8e-032
Identities = 20/50 (40%), Positives = 35/50 (70%)
Frame = +1 / +3
Query: 103 QECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
++C+ WL+S+ P+SV+F+ FGS + + E+AHGL+ + F+WVL+
Sbjct: 294 EQCLEWLNSKAPASVLFVSFGSEVGPSVEETRELAHGLEAAQKPFIWVLQ 443
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 619,133,165
Number of Sequences: 355925
Number of extensions: 10650922
Number of successful extensions: 87051
Number of sequences better than 1.0e-020: 233
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16068516000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)