TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV147001.1|CV147001 EST858210 Sequencing ESTs from loblo... 138 3e-055
gb|DR089481.1|DR089481 RTAL1_9_A10.b1_A029 Roots plus added... 186 9e-051
gb|DR386131.1|DR386131 RTHG1_13_D11.b1_A029 Roots plus adde... 186 1e-048
gb|DR099546.1|DR099546 STRR1_56_H07.b1_A033 Stem Response R... 184 2e-047
gb|BG040462.1|BG040462 NXSI_108_E04_F NXSI (Nsf Xylem Side ... 185 8e-046
gb|DR180159.1|DR180159 RTMNUT1_26_G09.g1_A029 Roots minus m... 183 3e-045
gb|DR742738.1|DR742738 RTCU1_6_E01.g2_A029 Roots plus added... 178 7e-044
gb|DR742749.1|DR742749 RTCU1_6_F01.g2_A029 Roots plus added... 178 7e-044
gb|CO366197.1|CO366197 RTK1_26_A08.g1_A029 Roots minus pota... 110 4e-043
gb|DR742757.1|DR742757 RTCU1_6_G01.g2_A029 Roots plus added... 176 5e-043
gb|AW870035.1|AW870035 NXNV_123_C07_F Nsf Xylem Normal wood... 152 5e-036
gb|DR180077.1|DR180077 RTMNUT1_26_G09.b1_A029 Roots minus m... 138 4e-034
gb|CV032884.1|CV032884 RTNACL1_18_H09.g1_A029 Roots plus ad... 141 1e-032
gb|CV032795.1|CV032795 RTNACL1_18_H09.b1_A029 Roots plus ad... 138 1e-031
gb|DT624925.1|DT624925 EST1159200 Sequencing ESTs from lobl... 138 1e-031
gb|BE458142.1|BE458142 NXCI_005_F01_F NXCI (Nsf Xylem Compr... 133 3e-030
gb|DR386213.1|DR386213 RTHG1_13_D11.g1_A029 Roots plus adde... 132 8e-030
gb|AW985460.1|AW985460 NXNV_136_H05_F Nsf Xylem Normal wood... 83 3e-027
gb|CO366117.1|CO366117 RTK1_26_A08.b1_A029 Roots minus pota... 65 1e-025
gb|DT636326.1|DT636326 EST1151257 Normalized pine embryo li... 108 9e-023
gb|CO364302.1|CO364302 RTK1_14_H10.g1_A029 Roots minus pota... 63 1e-022
>gb|CV147001.1|CV147001 EST858210 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIE263 5' end, mRNA sequence
Length = 955
Score = 138 bits (295), Expect(2) = 3e-055
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = -2 / +1
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
GT +AARD YD+LG+SK A Q EIKKAYY LAKK HPD NK D DAE+KFQE+Q AYE
Sbjct: 397 GTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKADPDAEKKFQEIQHAYEV 576
Query: 1111 LKDEQKRSLYDQVGPDQY 1058
LKD++KRSLYD+VGP+ +
Sbjct: 577 LKDDEKRSLYDRVGPEGF 630
Score = 99.1 bits (210), Expect(2) = 3e-055
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = -2 / +1
Query: 961 MNDFFRNILGDRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTP 782
MN+ RN+ R FGG DVK+ LELS +EA QGC+K ++++TSVTC C G+GVP GT P
Sbjct: 730 MNETLRNMFNQRSFGGGDVKITLELSFMEAVQGCTKNISYRTSVTCTSCNGSGVPAGTKP 909
Query: 781 ETC 773
+TC
Sbjct: 910 QTC 918
>gb|DR089481.1|DR089481 RTAL1_9_A10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_A10_A029 3', mRNA sequence
Length = 676
Score = 186 bits (401), Expect(2) = 9e-051
Identities = 75/112 (66%), Positives = 93/112 (83%)
Frame = -2 / +1
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLK 383
G + +PGDLYV L+VR+DP+FRRE DIHV+AV++ TQAILGGT+QVPTL+GD+VLK
Sbjct: 52 GEDPEGAQPGDLYVALKVRDDPIFRREGADIHVEAVISFTQAILGGTIQVPTLTGDIVLK 231
Query: 382 IKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
++ GTQ GQ+VVL+GKGI+ RNS +G+QYVHF V IP NLT RQR LIEEF
Sbjct: 232 VREGTQHGQKVVLKGKGIRLRNSTQYGNQYVHFRVIIPTNLTQRQRMLIEEF 387
Score = 100 bits (212), Expect(2) = 5e-021
Identities = 49/82 (59%), Positives = 57/82 (69%)
Frame = +3 / -3
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RCL VKF G++T K TY* P++ EF L+PFP +TT *P VP F T SP+RVGT V
Sbjct: 368 RCLCVKFVGIMTRKCTY*LPYWVEFRNLMPFPFKTTF*PCCVPSRTFNTMSPVRVGTWIV 189
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP IA*V TAST*+S SLR
Sbjct: 188 PPSIA*VKLMTAST*MSAPSLR 123
Score = 35.4 bits (71), Expect(2) = 9e-051
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 610 ILPGSDNEDTIKVVRSGGEDPDG 542
++PG DN +T+++ GGEDP+G
Sbjct: 1 VIPGVDNGETLRMYGYGGEDPEG 69
Score = 22.1 bits (42), Expect(2) = 5e-021
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1 / -1
Query: 466 HEYHLSLFGKQDPHEPRGSHK 528
HE L L+G D H P H+
Sbjct: 148 HECQLLLYGILDHHGP*EQHR 86
>gb|DR386131.1|DR386131 RTHG1_13_D11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_D11_A029 3', mRNA sequence
Length = 835
Score = 186 bits (401), Expect(2) = 1e-048
Identities = 75/112 (66%), Positives = 93/112 (83%)
Frame = -2 / +3
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLK 383
G + +PGDLYV L+VR+DP+FRRE DIHV+AV++ TQAILGGT+QVPTL+GD+VLK
Sbjct: 42 GEDPEGAQPGDLYVALKVRDDPIFRREGADIHVEAVISFTQAILGGTIQVPTLTGDIVLK 221
Query: 382 IKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
++ GTQ GQ+VVL+GKGI+ RNS +G+QYVHF V IP NLT RQR LIEEF
Sbjct: 222 VREGTQHGQKVVLKGKGIRLRNSTQYGNQYVHFRVIIPTNLTQRQRMLIEEF 377
Score = 100 bits (212), Expect(2) = 5e-021
Identities = 49/82 (59%), Positives = 57/82 (69%)
Frame = +3 / -1
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RCL VKF G++T K TY* P++ EF L+PFP +TT *P VP F T SP+RVGT V
Sbjct: 358 RCLCVKFVGIMTRKCTY*LPYWVEFRNLMPFPFKTTF*PCCVPSRTFNTMSPVRVGTCIV 179
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP IA*V TAST*+S SLR
Sbjct: 178 PPSIA*VKLMTAST*MSAPSLR 113
Score = 28.1 bits (55), Expect(2) = 1e-048
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2 / +3
Query: 595 DNEDTIKVVRSGGEDPDG 542
DN +T+++ GGEDP+G
Sbjct: 6 DNGETLRMYGYGGEDPEG 59
Score = 22.1 bits (42), Expect(2) = 5e-021
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1 / -2
Query: 466 HEYHLSLFGKQDPHEPRGSHK 528
HE L L+G D H P H+
Sbjct: 138 HECQLLLYGILDHHGP*EQHR 76
>gb|DR099546.1|DR099546 STRR1_56_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_56_H07_A033 3', mRNA sequence
Length = 729
Score = 184 bits (397), Expect(2) = 2e-047
Identities = 75/112 (66%), Positives = 92/112 (82%)
Frame = -2 / +2
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLK 383
G +PGDLYV L+VR+DP+FRRE DIHV+AV++ TQAILGGT+QVPTL+GD+VLK
Sbjct: 38 GKTQKGAQPGDLYVALKVRDDPIFRREGADIHVEAVISFTQAILGGTMQVPTLTGDIVLK 217
Query: 382 IKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
++ GTQ GQ+VVL+GKGI+ RNS +G+QYVHF V IP NLT RQR LIEEF
Sbjct: 218 VREGTQHGQKVVLKGKGIRLRNSTQYGNQYVHFRVIIPTNLTQRQRMLIEEF 373
Score = 100 bits (212), Expect(2) = 5e-021
Identities = 49/82 (59%), Positives = 57/82 (69%)
Frame = +3 / -1
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RCL VKF G++T K TY* P++ EF L+PFP +TT *P VP F T SP+RVGT V
Sbjct: 354 RCLCVKFVGIMTRKCTY*LPYWVEFRNLMPFPFKTTF*PCCVPSRTFNTMSPVRVGTCIV 175
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP IA*V TAST*+S SLR
Sbjct: 174 PPSIA*VKLMTAST*MSAPSLR 109
Score = 26.3 bits (51), Expect(2) = 2e-047
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 595 DNEDTIKVVRSGGEDPDGRP 536
DN +T+++ GGEDP+ P
Sbjct: 1 DNGETLRMYGYGGEDPERCP 60
Score = 22.1 bits (42), Expect(2) = 5e-021
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1 / -2
Query: 466 HEYHLSLFGKQDPHEPRGSHK 528
HE L L+G D H P H+
Sbjct: 134 HECQLLLYGILDHHGP*EQHR 72
>gb|BG040462.1|BG040462 NXSI_108_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_E04 5' similar to Arabidopsis thaliana
sequence At5g48030 DnaJ protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 549
Score = 185 bits (398), Expect = 8e-046
Identities = 74/105 (70%), Positives = 91/105 (86%)
Frame = -2 / +3
Query: 541 RPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQP 362
+PGDLYV L+VR+DP+FRRE DIHV+AV++ TQAILGGT+QVPTL+GD+VLK++ GTQ
Sbjct: 12 QPGDLYVALKVRDDPIFRREGADIHVEAVISFTQAILGGTIQVPTLTGDIVLKVREGTQH 191
Query: 361 GQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
GQ+VVL+GKGI+ RNS +G+QYVHF V IP NLT RQR LIEEF
Sbjct: 192 GQKVVLKGKGIRLRNSTQYGNQYVHFRVIIPTNLTQRQRMLIEEF 326
Score = 100 bits (212), Expect(2) = 5e-021
Identities = 49/82 (59%), Positives = 57/82 (69%)
Frame = +3 / -3
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RCL VKF G++T K TY* P++ EF L+PFP +TT *P VP F T SP+RVGT V
Sbjct: 307 RCLCVKFVGIMTRKCTY*LPYWVEFRNLMPFPFKTTF*PCCVPSRTFNTMSPVRVGTWIV 128
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP IA*V TAST*+S SLR
Sbjct: 127 PPSIA*VKLMTAST*MSAPSLR 62
Score = 22.1 bits (42), Expect(2) = 5e-021
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1 / -1
Query: 466 HEYHLSLFGKQDPHEPRGSHK 528
HE L L+G D H P H+
Sbjct: 87 HECQLLLYGILDHHGP*EQHR 25
>gb|DR180159.1|DR180159 RTMNUT1_26_G09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_G09_A029 5', mRNA sequence
Length = 776
Score = 183 bits (394), Expect = 3e-045
Identities = 74/114 (64%), Positives = 93/114 (81%)
Frame = -2 / -3
Query: 568 RSGGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVV 389
R G + G PGDL VT++VREDPVFRRE DIHVD ++++QAILGGT+QVPTL+G VV
Sbjct: 762 RGGADPEGGHPGDLLVTIKVREDPVFRREGADIHVDENISISQAILGGTIQVPTLTGTVV 583
Query: 388 LKIKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
LK++ GTQ GQ+V L+GKGIK+R+S ++G+QYVHF V IP N+T RQR LIEEF
Sbjct: 582 LKVRQGTQHGQKVSLKGKGIKSRHSHHYGNQYVHFRVIIPTNITQRQRSLIEEF 421
>gb|DR742738.1|DR742738 RTCU1_6_E01.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_E01_A029 5', mRNA sequence
Length = 534
Score = 178 bits (384), Expect = 7e-044
Identities = 72/106 (67%), Positives = 90/106 (84%)
Frame = -2 / +2
Query: 544 GRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQ 365
G PGDL VT++VREDPVFRRE DIHVD ++++QAILGGT+QVPTL+G VVLK++ GTQ
Sbjct: 2 GHPGDLLVTIKVREDPVFRREGADIHVDENISISQAILGGTIQVPTLTGTVVLKVRQGTQ 181
Query: 364 PGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
GQ+V L+GKGIK+R+S ++G+QYVHF V IP N+T RQR LIEEF
Sbjct: 182 HGQKVSLKGKGIKSRHSHHYGNQYVHFRVIIPTNITQRQRSLIEEF 319
>gb|DR742749.1|DR742749 RTCU1_6_F01.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_F01_A029 5', mRNA sequence
Length = 693
Score = 178 bits (384), Expect = 7e-044
Identities = 72/106 (67%), Positives = 90/106 (84%)
Frame = -2 / +2
Query: 544 GRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQ 365
G PGDL VT++VREDPVFRRE DIHVD ++++QAILGGT+QVPTL+G VVLK++ GTQ
Sbjct: 2 GHPGDLLVTIKVREDPVFRREGADIHVDENISISQAILGGTIQVPTLTGTVVLKVRQGTQ 181
Query: 364 PGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
GQ+V L+GKGIK+R+S ++G+QYVHF V IP N+T RQR LIEEF
Sbjct: 182 HGQKVSLKGKGIKSRHSHHYGNQYVHFRVIIPTNITQRQRSLIEEF 319
>gb|CO366197.1|CO366197 RTK1_26_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_A08_A029 5', mRNA sequence
Length = 881
Score = 110 bits (234), Expect(3) = 4e-043
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = -2 / +1
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
G +A RD Y+ LGV + AS+ EIK A++ LAKK HPD NKGDA A+ KFQE+ AYE
Sbjct: 172 GLHNMAMRDLYETLGVHRDASEDEIKNAFHKLAKKYHPDLNKGDAKAKIKFQEIHDAYEI 351
Query: 1111 LKDEQKRSLYDQVGPDQYEKTAS 1043
LKD++KR+ YD+VGP +E+ S
Sbjct: 352 LKDKKKRAEYDRVGPVGFEQGTS 420
Score = 56.1 bits (116), Expect(3) = 4e-043
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 715 STCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKVVRSG 560
STC C G G+ VKE C C+G+ V G K + ++I G ++ D I+V R+G
Sbjct: 721 STCVTCKGMGRVVKESCYTCKGSGTVRGLKEIDVNIPAGIESGDIIRVPRAG 876
Score = 54.7 bits (113), Expect(3) = 4e-043
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = -2 / +1
Query: 910 DVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
++KV LE++ E+ +GC+K ++F V C C G+G PPG P+ C
Sbjct: 538 NIKVNLEMTFFESVKGCTKHLSFIAPVRCYTCKGSGHPPGVNPQIC 675
>gb|DR742757.1|DR742757 RTCU1_6_G01.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_G01_A029 5', mRNA sequence
Length = 720
Score = 176 bits (378), Expect = 5e-043
Identities = 71/104 (68%), Positives = 89/104 (85%)
Frame = -2 / +3
Query: 538 PGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQPG 359
PGDL VT++VREDPVFRRE DIHVD ++++QAILGGT+QVPTL+G VVLK++ GTQ G
Sbjct: 12 PGDLLVTIKVREDPVFRREGADIHVDENISISQAILGGTIQVPTLTGTVVLKVRQGTQHG 191
Query: 358 QRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
Q+V L+GKGIK+R+S ++G+QYVHF V IP N+T RQR LIEEF
Sbjct: 192 QKVSLKGKGIKSRHSHHYGNQYVHFRVIIPTNITQRQRSLIEEF 323
>gb|AW870035.1|AW870035 NXNV_123_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_C07 5' similar to Arabidopsis thaliana
sequence At5g48030 DnaJ protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 152 bits (327), Expect = 5e-036
Identities = 60/130 (46%), Positives = 81/130 (62%)
Frame = -2 / +2
Query: 961 MNDFFRNILGDRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTP 782
MN+ RN+ FGG DVK+ LELS +EA QGC+K ++++TSVTC C G+GVP GT P
Sbjct: 47 MNEALRNMFNQGSFGGGDVKITLELSFMEAVQGCTKNISYRTSVTCTSCNGSGVPAGTKP 226
Query: 781 ETCLXXXXXXXXXXXXXXFRMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILP 602
+TC FR++STC+ CGGSG V EFCK C G++VV G+K +
Sbjct: 227 QTCRVCKGSGTIKMQRGAFRLESTCSTCGGSGSLVXEFCKTCGGDRVVKGQKKCTXXXMA 406
Query: 601 GSDNEDTIKV 572
DN++T+ V
Sbjct: 407 XIDNDETLXV 436
>gb|DR180077.1|DR180077 RTMNUT1_26_G09.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_G09_A029 3', mRNA sequence
Length = 839
Score = 138 bits (295), Expect(2) = 4e-034
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = -2 / -1
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
GT +AARD YD+LG+SK A Q EIKKAYY LAKK HPD NK D DAE+KFQE+Q AYE
Sbjct: 401 GTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKADPDAEKKFQEIQHAYEV 222
Query: 1111 LKDEQKRSLYDQVGPDQY 1058
LKD++KRSLYD+VGP+ +
Sbjct: 221 LKDDEKRSLYDRVGPEGF 168
Score = 28.1 bits (55), Expect(2) = 4e-034
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2 / -1
Query: 961 MNDFFRNILGDRDFGGRDVKV 899
MN+ RN+ FGG DVK+
Sbjct: 68 MNETLRNMFNQGSFGGGDVKI 6
>gb|CV032884.1|CV032884 RTNACL1_18_H09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H09_A029 5', mRNA sequence
Length = 727
Score = 141 bits (302), Expect = 1e-032
Identities = 57/87 (65%), Positives = 73/87 (83%)
Frame = -2 / -2
Query: 487 REKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQPGQRVVLRGKGIKTRNSPY 308
RE DIHVD ++++QAILGGT+QVPTL+G VVLK++ GTQ GQ+V L+GKGIK+R+S +
Sbjct: 726 REGADIHVDENISISQAILGGTIQVPTLTGTVVLKVRQGTQHGQKVSLKGKGIKSRHSHH 547
Query: 307 HGDQYVHFNVNIPENLTSRQRELIEEF 227
+G+QYVHF V IP N+T RQR LIEEF
Sbjct: 546 YGNQYVHFRVIIPTNITQRQRSLIEEF 466
>gb|CV032795.1|CV032795 RTNACL1_18_H09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H09_A029 3', mRNA sequence
Length = 802
Score = 138 bits (295), Expect = 1e-031
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = -2 / -2
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
GT +AARD YD+LG+SK A Q EIKKAYY LAKK HPD NK D DAE+KFQE+Q AYE
Sbjct: 363 GTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKADPDAEKKFQEIQHAYEV 184
Query: 1111 LKDEQKRSLYDQVGPDQY 1058
LKD++KRSLYD+VGP+ +
Sbjct: 183 LKDDEKRSLYDRVGPEGF 130
>gb|DT624925.1|DT624925 EST1159200 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAK03 5' end, mRNA sequence
Length = 782
Score = 138 bits (295), Expect = 1e-031
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = -2 / +1
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
GT +AARD YD+LG+SK A Q EIKKAYY LAKK HPD NK D DAE+KFQE+Q AYE
Sbjct: 397 GTLGMAARDLYDILGISKDAGQGEIKKAYYALAKKHHPDVNKADPDAEKKFQEIQHAYEV 576
Query: 1111 LKDEQKRSLYDQVGPDQY 1058
LKD++KRSLYD+VGP+ +
Sbjct: 577 LKDDEKRSLYDRVGPEGF 630
>gb|BE458142.1|BE458142 NXCI_005_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_005_F01 5' similar to Arabidopsis
thaliana sequence At5g48030 DnaJ protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 514
Score = 133 bits (285), Expect = 3e-030
Identities = 50/79 (63%), Positives = 68/79 (86%)
Frame = -2 / +3
Query: 1279 VAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYETLKDE 1100
+AA+DYY++LGV+KSAS +EIK AYY LAK+ HPD NK D +AE+KFQ++QRAYE LKD+
Sbjct: 216 MAAKDYYEILGVNKSASASEIKXAYYALAKQHHPDVNKSDPEAEKKFQDIQRAYEVLKDD 395
Query: 1099 QKRSLYDQVGPDQYEKTAS 1043
+KRSLYDQ+GP +E+ ++
Sbjct: 396 EKRSLYDQMGPXXFEQASA 452
>gb|DR386213.1|DR386213 RTHG1_13_D11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_13_D11_A029 5', mRNA sequence
Length = 817
Score = 132 bits (282), Expect = 8e-030
Identities = 50/71 (70%), Positives = 64/71 (90%)
Frame = -2 / +3
Query: 1279 VAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYETLKDE 1100
+AA+DYY++LGV+KSAS +EIKKAYY LAK+ HPD NK D +AE+KFQ++QRAYE LKD+
Sbjct: 603 MAAKDYYEILGVNKSASASEIKKAYYALAKQHHPDVNKSDPEAEKKFQDIQRAYEVLKDD 782
Query: 1099 QKRSLYDQVGP 1067
+KRSLYDQ+GP
Sbjct: 783 EKRSLYDQMGP 815
>gb|AW985460.1|AW985460 NXNV_136_H05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_136_H05 5' similar to Arabidopsis thaliana
sequence At5g48030 DnaJ protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 347
Score = 83.1 bits (175), Expect(2) = 3e-027
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = -2 / +3
Query: 724 RMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKVVRSGGED 551
RMQSTC++C G+G +KEFCK+CRG +VV G K V LD++P DN +T+++ ED
Sbjct: 174 RMQSTCSECSGTGXXIKEFCKSCRGKRVVRGSKRVTLDVIPXVDNGETLRMYGYXXED 347
Score = 60.2 bits (125), Expect(2) = 3e-027
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2 / +3
Query: 895 LELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
+ELS +EA QGC+K +++ V C C G G+P GT P+TC
Sbjct: 3 MELSFMEAVQGCTKNLSYDADVRCSACDGTGMPAGTKPQTC 125
>gb|CO366117.1|CO366117 RTK1_26_A08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_A08_A029 3', mRNA sequence
Length = 877
Score = 64.8 bits (135), Expect(3) = 1e-025
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = -2 / +3
Query: 442 QAILGGTVQVPTLSGDVVLKIKPGTQPGQRVVLRGKGIKTR 320
QAI+GG ++VPTLSG+++LKI G QPG +VLRGKGI R
Sbjct: 204 QAIMGGKIKVPTLSGNILLKIPKGVQPGDVLVLRGKGIPKR 326
Score = 49.2 bits (101), Expect(3) = 1e-025
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2 / +3
Query: 538 PGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQ 440
PGDL + ++V ED +FRR+ DI+VDA +NVTQ
Sbjct: 99 PGDLDIQVQVLEDSIFRRDGEDIYVDACINVTQ 197
Score = 41.4 bits (84), Expect(3) = 1e-025
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -2 / +3
Query: 304 GDQYVHFNVNIPENLTSRQRELIEE 230
GDQYV F V IP +T RQR ++EE
Sbjct: 345 GDQYVQFRVKIPTKITERQRSILEE 419
>gb|DT636326.1|DT636326 EST1151257 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGQ50 3' end, mRNA sequence
Length = 797
Score = 108 bits (231), Expect = 9e-023
Identities = 45/80 (56%), Positives = 59/80 (73%)
Frame = -2 / +2
Query: 1291 GTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYET 1112
G +A RD Y+ LGV + AS+ EIK A++ LAKK HPD NKGDA A+ KFQE+ AYE
Sbjct: 515 GLHNMAMRDLYETLGVHRDASEDEIKNAFHKLAKKYHPDLNKGDAKAKIKFQEIHDAYEI 694
Query: 1111 LKDEQKRSLYDQVGPDQYEK 1052
LKD++KR+ YD+VGP +E+
Sbjct: 695 LKDKKKRAEYDRVGPVCFEQ 754
>gb|CO364302.1|CO364302 RTK1_14_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_H10_A029 5', mRNA sequence
Length = 865
Score = 62.9 bits (131), Expect(3) = 1e-022
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = -2 / +2
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKVVRSGGEDPDGRPGDLYVTLEVREDP 497
K+ C C+G KV+P +K + + + G N I E PD GD+ ++ +E P
Sbjct: 614 KDRCPQCKGEKVLPDKKMLEVTVEKGMQNGQRITFEGEADEAPDTVTGDIVFVVQQKEHP 793
Query: 496 VFRREKGDIHVDAVLNVTQAILG 428
F+R+ D+ V+ L +T+A+ G
Sbjct: 794 KFKRKGDDLFVEHTLLLTEALCG 862
Score = 46.9 bits (96), Expect(3) = 1e-022
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -2 / +2
Query: 1264 YYDVLGVSKSASQAEIKKAYYGLAKKLHPD 1175
YY++LGV K+ASQ E+KKAY A K HPD
Sbjct: 47 YYEILGVPKNASQDELKKAYRKAAIKNHPD 136
Score = 41.8 bits (85), Expect(3) = 1e-022
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 1144 KFQEVQRAYETLKDEQKRSLYDQVGPD 1064
KF+E+ +AYE L D +KR +YDQ G D
Sbjct: 155 KFKELAQAYEVLSDPEKRDIYDQYGED 235
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 805,888,844
Number of Sequences: 355925
Number of extensions: 12581374
Number of successful extensions: 70998
Number of sequences better than 1.0e-020: 25
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 24847106265
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)