TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 111 3e-024
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 111 3e-024
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 111 3e-024
gb|CX650304.1|CX650304 COLD1_44_F10.g1_A029 Root cold Pinus... 111 3e-024
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 111 3e-024
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 111 3e-024
gb|DR091450.1|DR091450 RTAL1_21_E07.g1_A029 Roots plus adde... 111 3e-024
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 111 3e-024
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 108 3e-023
>gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_A11_A029 3', mRNA sequence
Length = 599
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 324 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 145
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 144 QSHTNDEKASA 112
>gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_B11_A029 3', mRNA sequence
Length = 621
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 346 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 167
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 166 QSHTNDEKASA 134
>gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_F10_A029 3', mRNA sequence
Length = 790
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 94 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 273
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 274 QSHTNDEKASA 306
>gb|CX650304.1|CX650304 COLD1_44_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_F10_A029 5', mRNA sequence
Length = 808
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / +2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 98 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 277
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 278 QSHTNDEKASA 310
>gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 3', mRNA sequence
Length = 750
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 384 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 205
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 204 QSHTNDEKASA 172
>gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 5', mRNA sequence
Length = 728
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 627 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 448
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 447 QSHTNDEKASA 415
>gb|DR091450.1|DR091450 RTAL1_21_E07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_21_E07_A029 5', mRNA sequence
Length = 712
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 54 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 233
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 234 QSHTNDEKASA 266
>gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_B05_A029 5', mRNA sequence
Length = 843
Score = 111 bits (238), Expect = 3e-024
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE YV+V +P N TE+ +P NALYCG L QKP
Sbjct: 687 ILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALYCGALSRMQKP 508
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 507 QSHTNDEKASA 475
>gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_070_A11 5' similar to Arabidopsis thaliana
sequence At4g12420 pollen-specific protein - like
predicted GPI-anchored protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 448
Score = 108 bits (230), Expect = 3e-023
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVG+WNLRAE LD WY GQE Y +V +P N TE +P NALYCG L QKP
Sbjct: 111 ILVSLDNVGMWNLRAENLDTWYLGQETYXRVVNPEINNKTEXALPSNALYCGALSRMQKP 290
Query: 183 QVHESNSKSSA 215
Q H ++ K+SA
Sbjct: 291 QSHTNDEKASA 323
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 281,310,877
Number of Sequences: 355925
Number of extensions: 3993524
Number of successful extensions: 58791
Number of sequences better than 1.0e-020: 12
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6404281260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)