TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR014514.1|DR014514 HEAT1_50_A06.b1_A029 Root at 37 C fo... 63 2e-024
gb|CF395400.1|CF395400 RTDS2_11_G06.g1_A021 Drought-stresse... 80 2e-024
gb|CO365044.1|CO365044 RTK1_23_G08.b1_A029 Roots minus pota... 65 2e-024
gb|DR389051.1|DR389051 RTHG1_32_D01.b1_A029 Roots plus adde... 65 2e-024
gb|CF474303.1|CF474303 RTWW2_20_A03.b1_A021 Well-watered lo... 79 5e-024
gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch... 57 1e-023
gb|CX648468.1|CX648468 COLD1_28_G08.g1_A029 Root cold Pinus... 57 2e-023
gb|CX648384.1|CX648384 COLD1_28_G08.b1_A029 Root cold Pinus... 57 2e-023
dbj|BD236784.1| Materials and method for modification of pl... 57 2e-023
gb|CF398188.1|CF398188 RTDS3_21_H03.g1_A022 Drought-stresse... 57 2e-023
gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pin... 57 2e-023
gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood... 58 3e-023
gb|CO365852.1|CO365852 RTK1_19_D03.g1_A029 Roots minus pota... 57 2e-021
gb|DN608753.1|DN608753 EST961803 Subtracted pine embryo lib... 57 2e-021
gb|DN609016.1|DN609016 EST962066 Subtracted pine embryo lib... 57 2e-021
gb|DT629699.1|DT629699 EST1156269 Subtracted pine embryo li... 57 2e-021
gb|DN611788.1|DN611788 EST964838 Subtracted pine embryo lib... 57 2e-021
gb|DN609269.1|DN609269 EST962319 Subtracted pine embryo lib... 59 2e-021
gb|DT629207.1|DT629207 EST1155777 Subtracted pine embryo li... 57 4e-021
gb|DN614133.1|DN614133 EST967183 Subtracted pine embryo lib... 57 4e-021
gb|DR018105.1|DR018105 STRS1_20_B09.g1_A034 Shoot tip pitch... 62 4e-021
gb|DN608618.1|DN608618 EST961668 Subtracted pine embryo lib... 58 5e-021
gb|DT627604.1|DT627604 EST1156353 Subtracted pine embryo li... 58 5e-021
gb|DT629590.1|DT629590 EST1156160 Subtracted pine embryo li... 58 5e-021
gb|DR069381.1|DR069381 RTDK1_7_A07.b1_A029 Roots, dark Pinu... 58 7e-021
>gb|DR014514.1|DR014514 HEAT1_50_A06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_A06_A029 3', mRNA sequence
Length = 828
Score = 62.9 bits (131), Expect(3) = 2e-024
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -2 / +2
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+PYP+S+PM ++++LW+ WAT G DW+ APFV +YR++
Sbjct: 305 VPYPNSQPMKVYSSLWNADDWATRGGLAKTDWTKAPFVATYRNF 436
Score = 56.5 bits (117), Expect(3) = 2e-024
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -2 / +2
Query: 424 VRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
+RW +RN+M YNYC D RFP G P EC R
Sbjct: 578 LRWVQRNYMTYNYCTDSKRFPNGFPPECTR 667
Score = 34.5 bits (69), Expect(3) = 2e-024
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYP 638
HTY+++W+ I F VD IR F DL P
Sbjct: 212 HTYSLLWDAQQITFLVDGTPIRVFPNSEDLGVP 310
>gb|CF395400.1|CF395400 RTDS2_11_G06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_G06_A021 5', mRNA sequence
Length = 759
Score = 80.3 bits (169), Expect(3) = 2e-024
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = -2 / +2
Query: 655 ADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
A +PYP+SRPM + +TLW+G WAT+ GRV IDWS APFV SY+S+
Sbjct: 356 AGIPYPNSRPMRILSTLWNGENWATDGGRVKIDWSKAPFVASYQSF 493
Score = 35.4 bits (71), Expect(3) = 2e-024
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
H Y+I+WN I+F VD + IR FK
Sbjct: 266 HNYSILWNHNQIVFWVDSIPIRVFK 340
Score = 34.5 bits (69), Expect(3) = 2e-024
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2 / +2
Query: 454 RQLDSAEWGTVRWAERNFMRYNYCQD 377
+ LD + G + W +N+M Y+YC D
Sbjct: 569 QSLDEFQLGKLDWVRKNYMTYDYCHD 646
>gb|CO365044.1|CO365044 RTK1_23_G08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_G08_A029 3', mRNA sequence
Length = 853
Score = 64.8 bits (135), Expect(3) = 2e-024
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = -2 / +3
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+PYP+ + M + +++W+G WAT+ GRV IDWS +PFV SY ++
Sbjct: 396 VPYPNEQAMRVFSSIWNGDQWATQGGRVKIDWSYSPFVASYMNF 527
Score = 50.1 bits (103), Expect(3) = 2e-024
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
W L+ A+ G ++W N++ Y+YC+D RF LPAEC++
Sbjct: 591 WNQNSLNYAQQGQLQWVRSNYLIYDYCKDYARFNYQLPAECSQ 719
Score = 35.0 bits (70), Expect(3) = 2e-024
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYP 638
H Y+I+WNP I VD L IR F ++ P
Sbjct: 303 HNYSILWNPQQIAIFVDGLPIRVFANNENIGVP 401
>gb|DR389051.1|DR389051 RTHG1_32_D01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_D01_A029 3', mRNA sequence
Length = 782
Score = 64.8 bits (135), Expect(3) = 2e-024
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = -2 / +3
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+PYP+ + M + +++W+G WAT+ GRV IDWS +PFV SY ++
Sbjct: 324 VPYPNEQAMRVFSSIWNGDQWATQGGRVKIDWSYSPFVASYMNF 455
Score = 50.1 bits (103), Expect(3) = 2e-024
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
W L+ A+ G ++W N++ Y+YC+D RF LPAEC++
Sbjct: 519 WNQNSLNYAQQGQLQWVRSNYLIYDYCKDYARFNYQLPAECSQ 647
Score = 35.0 bits (70), Expect(3) = 2e-024
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYP 638
H Y+I+WNP I VD L IR F ++ P
Sbjct: 231 HNYSILWNPQQIAIFVDGLPIRVFANNENIGVP 329
>gb|CF474303.1|CF474303 RTWW2_20_A03.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_20_A03_A021 3', mRNA sequence
Length = 594
Score = 79.0 bits (166), Expect(3) = 5e-024
Identities = 27/46 (58%), Positives = 37/46 (80%)
Frame = -2 / +1
Query: 655 ADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
A +PYP+ RPM + +TLW+G WAT+ GRV IDW+DAPF+ SY+S+
Sbjct: 169 AGVPYPNKRPMKIISTLWNGEDWATDGGRVKIDWNDAPFIASYQSF 306
Score = 35.4 bits (71), Expect(3) = 5e-024
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 454 RQLDSAEWGTVRWAERNFMRYNYCQDGWRFP 362
++L+ + + W +N+M Y+YC D R+P
Sbjct: 367 QRLNQHQLRQLEWVRKNYMTYDYCHDASRYP 459
Score = 34.5 bits (69), Expect(3) = 5e-024
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
H Y+I+WN I+F +D + IR FK
Sbjct: 82 HNYSILWNQKQIVFWIDSVPIRVFK 156
>gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_C05_A034 3', mRNA sequence
Length = 849
Score = 56.5 bits (117), Expect(3) = 1e-023
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS + ++W +N+M Y+YC D RFPQGLPAEC
Sbjct: 536 LDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAEC 643
Score = 52.4 bits (108), Expect(3) = 1e-023
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP ++ M ++ +LW+ WAT G V DW+ APFV S+ ++
Sbjct: 368 YPKNQAMRMYTSLWNADDWATRGGLVKTDWTKAPFVASFSNF 493
Score = 38.6 bits (78), Expect(3) = 1e-023
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W P I F VD + IR FK
Sbjct: 251 HTYSVLWTPNQITFSVDGIPIRVFK 325
>gb|CX648468.1|CX648468 COLD1_28_G08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_G08_A029 5', mRNA sequence
Length = 805
Score = 57.4 bits (119), Expect(3) = 2e-023
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -2 / +1
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS E ++W +N+M Y+YC D RFPQGLPAEC
Sbjct: 571 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 678
Score = 51.5 bits (106), Expect(3) = 2e-023
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -2 / +1
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSY 527
YP S+ M ++++LW+ WAT G V DW+ APF+ S+
Sbjct: 403 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASF 519
Score = 38.2 bits (77), Expect(3) = 2e-023
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W P I F VD + +R FK
Sbjct: 286 HTYSVLWTPNQITFSVDGIPVRVFK 360
>gb|CX648384.1|CX648384 COLD1_28_G08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_G08_A029 3', mRNA sequence
Length = 793
Score = 57.4 bits (119), Expect(3) = 2e-023
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS E ++W +N+M Y+YC D RFPQGLPAEC
Sbjct: 461 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 568
Score = 51.5 bits (106), Expect(3) = 2e-023
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSY 527
YP S+ M ++++LW+ WAT G V DW+ APF+ S+
Sbjct: 293 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASF 409
Score = 38.2 bits (77), Expect(3) = 2e-023
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W P I F VD + +R FK
Sbjct: 176 HTYSVLWTPNQITFSVDGIPVRVFK 250
>dbj|BD236784.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 500
Score = 57.4 bits (119), Expect(3) = 2e-023
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS E ++W +N+M Y+YC D RFPQGLPAEC
Sbjct: 380 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 487
Score = 54.2 bits (112), Expect(3) = 2e-023
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DW+ APFV S+ ++
Sbjct: 212 YPKSQAMRMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNF 337
Score = 35.4 bits (71), Expect(3) = 2e-023
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W P I VD + +R FK
Sbjct: 95 HTYSVLWTPNQITLSVDGIPVRVFK 169
>gb|CF398188.1|CF398188 RTDS3_21_H03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_H03_A022 5', mRNA sequence
Length = 451
Score = 57.4 bits (119), Expect(3) = 2e-023
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS E ++W +N+M Y+YC D RFPQGLPAEC
Sbjct: 293 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 400
Score = 51.5 bits (106), Expect(3) = 2e-023
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSY 527
YP S+ M ++++LW+ WAT G V DW+ APF+ S+
Sbjct: 125 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASF 241
Score = 38.2 bits (77), Expect(3) = 2e-023
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W P I F VD + +R FK
Sbjct: 8 HTYSVLWTPNQITFSVDGIPVRVFK 82
>gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_A08_A029 5', mRNA sequence
Length = 873
Score = 57.4 bits (119), Expect(3) = 2e-023
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -2 / +3
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 345 YPRSQAMRVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 470
Score = 53.3 bits (110), Expect(3) = 2e-023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = -2 / +3
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS + ++W N+M Y+YC D RFPQG+PAEC
Sbjct: 510 LDSNQEQKLQWVRNNYMIYDYCADTNRFPQGVPAEC 617
Score = 35.9 bits (72), Expect(3) = 2e-023
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 228 HTYSVLWTSNQIIFSVDETPVRVFK 302
>gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_G11 5' similar to Arabidopsis thaliana
sequence At4g25810 xyloglucan endo-1,4-beta-D-glucanase
(XTR-6) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 606
Score = 57.9 bits (120), Expect(3) = 3e-023
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 170 YPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 295
Score = 52.4 bits (108), Expect(3) = 3e-023
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
LDS + ++W N+M Y+YC D FPQGLPAEC
Sbjct: 335 LDSNQEQKLQWVRNNYMIYDYCADTKXFPQGLPAEC 442
Score = 35.9 bits (72), Expect(3) = 3e-023
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 53 HTYSVLWTSNQIIFSVDETPVRVFK 127
>gb|CO365852.1|CO365852 RTK1_19_D03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_19_D03_A029 5', mRNA sequence
Length = 848
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / -2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 520 YPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNF 395
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / -2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 346 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 239
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / -2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ IR F+
Sbjct: 637 HTYSVLWTSNQIIFSVDESPIRVFR 563
>gb|DN608753.1|DN608753 EST961803 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA386, mRNA sequence
Length = 819
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 311 YPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNF 436
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 485 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 592
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 194 HTYSVLWTSNQIIFSVDGSPIRVFK 268
>gb|DN609016.1|DN609016 EST962066 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA740, mRNA sequence
Length = 816
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 311 YPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNF 436
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 485 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 592
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 194 HTYSVLWTSNQIIFSVDGSPIRVFK 268
>gb|DT629699.1|DT629699 EST1156269 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMDE25 5' end, mRNA sequence
Length = 784
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / -1
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 520 YPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNF 395
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / -1
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 346 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 239
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / -1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 637 HTYSVLWTSNQIIFSVDGSPIRVFK 563
>gb|DN611788.1|DN611788 EST964838 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB679, mRNA sequence
Length = 756
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 311 YPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNF 436
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 485 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 592
Score = 34.5 bits (69), Expect(3) = 2e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 194 HTYSVLWTSNQIIFSVDGSPIRVFK 268
>gb|DN609269.1|DN609269 EST962319 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAA78, mRNA sequence
Length = 748
Score = 59.3 bits (123), Expect(3) = 2e-021
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = -2 / -3
Query: 664 KRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
K A+ YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 491 KWIANYHYPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 345
Score = 44.6 bits (91), Expect(3) = 2e-021
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2 / -3
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECARH 332
LDS + ++W N+M Y+YC D RFP+G P H
Sbjct: 305 LDSNQEQKLQWVRNNYMIYDYCADTKRFPRGYPRNVNEH 189
Score = 35.9 bits (72), Expect(3) = 2e-021
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / -2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 588 HTYSVLWTSNQIIFSVDETPVRVFK 514
>gb|DT629207.1|DT629207 EST1155777 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD676 5' end, mRNA sequence
Length = 852
Score = 57.4 bits (119), Expect(3) = 4e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / -2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 542 YPKSQAMSVYSSLWNADDWATRGGLVETDWTKAPFVASFRNF 417
Score = 47.8 bits (98), Expect(3) = 4e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / -2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 368 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 261
Score = 33.6 bits (67), Expect(3) = 4e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / -2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 659 HTYSVLWTSNQIIFSVDGGPIRVFK 585
>gb|DN614133.1|DN614133 EST967183 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC048, mRNA sequence
Length = 848
Score = 57.4 bits (119), Expect(3) = 4e-021
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M+++++LW+ WAT G V DW+ APFV S+R++
Sbjct: 311 YPKSQAMSVYSSLWNADDWATRGGLVETDWTKAPFVASFRNF 436
Score = 47.8 bits (98), Expect(3) = 4e-021
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
L+S + + W +N+M Y+YC D RFPQG P EC
Sbjct: 485 LESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPEC 592
Score = 33.6 bits (67), Expect(3) = 4e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD IR FK
Sbjct: 194 HTYSVLWTSNQIIFSVDGGPIRVFK 268
>gb|DR018105.1|DR018105 STRS1_20_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_B09_A034 5', mRNA sequence
Length = 755
Score = 62.5 bits (130), Expect(3) = 4e-021
Identities = 19/44 (43%), Positives = 32/44 (72%)
Frame = -2 / -2
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+PYPSS+PM + A+LW+G WAT+ G+ I+W +PF+ ++ +
Sbjct: 427 VPYPSSKPMQVIASLWNGENWATDGGKSKINWKQSPFIATFEGF 296
Score = 40.9 bits (83), Expect(3) = 4e-021
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / -2
Query: 457 NRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLP 350
++ L + + +RW RN+M Y+YC D RFP+ P
Sbjct: 205 SKGLSAEQMRQLRWVRRNYMDYDYCTDKTRFPKPPP 98
Score = 35.4 bits (71), Expect(3) = 4e-021
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2 / -2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++WN ILF V + +R FK
Sbjct: 523 HTYSLLWNRHQILFMVSGVVVRVFK 449
>gb|DN608618.1|DN608618 EST961668 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA203, mRNA sequence
Length = 781
Score = 57.9 bits (120), Expect(3) = 5e-021
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -2 / -3
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 470 YPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 345
Score = 44.6 bits (91), Expect(3) = 5e-021
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2 / -3
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECARH 332
LDS + ++W N+M Y+YC D RFP+G P H
Sbjct: 305 LDSNQEQKLQWVRNNYMIYDYCADTKRFPRGYPRNVNEH 189
Score = 35.9 bits (72), Expect(3) = 5e-021
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / -3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 587 HTYSVLWTSNQIIFSVDETPVRVFK 513
>gb|DT627604.1|DT627604 EST1156353 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO51 5' end, mRNA sequence
Length = 780
Score = 57.9 bits (120), Expect(3) = 5e-021
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 311 YPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 436
Score = 44.6 bits (91), Expect(3) = 5e-021
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECARH 332
LDS + ++W N+M Y+YC D RFP+G P H
Sbjct: 476 LDSNQEQKLQWVRNNYMIYDYCADTKRFPRGYPRNVNEH 592
Score = 35.9 bits (72), Expect(3) = 5e-021
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 194 HTYSVLWTSNQIIFSVDETPVRVFK 268
>gb|DT629590.1|DT629590 EST1156160 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMDB35 5' end, mRNA sequence
Length = 780
Score = 57.9 bits (120), Expect(3) = 5e-021
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
YP S+ M ++++LW+ WAT G V DWS APFV S+R++
Sbjct: 311 YPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNF 436
Score = 44.6 bits (91), Expect(3) = 5e-021
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2 / +2
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECARH 332
LDS + ++W N+M Y+YC D RFP+G P H
Sbjct: 476 LDSNQEQKLQWVRNNYMIYDYCADTKRFPRGYPRNVNEH 592
Score = 35.9 bits (72), Expect(3) = 5e-021
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++W I+F VD+ +R FK
Sbjct: 194 HTYSVLWTSNQIIFSVDETPVRVFK 268
>gb|DR069381.1|DR069381 RTDK1_7_A07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_A07_A029 3', mRNA sequence
Length = 793
Score = 57.9 bits (120), Expect(3) = 7e-021
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -2 / +3
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
YP ++PM ++++LW+ WAT G DWS APFV SY+ ++
Sbjct: 240 YPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYKGFH 368
Score = 41.8 bits (85), Expect(3) = 7e-021
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADL 647
H+YT++WN I+F VDD+ IR FK DL
Sbjct: 141 HSYTVLWNMHQIVFFVDDVPIRVFKNSKDL 230
Score = 38.2 bits (77), Expect(3) = 7e-021
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2 / +3
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLP 350
LD +W ++W + YNYC D R+P+ P
Sbjct: 453 LDGQQWRKLKWVRDRYTIYNYCTDRVRYPKMSP 551
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 323,041,603
Number of Sequences: 355925
Number of extensions: 4242216
Number of successful extensions: 45295
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10783529000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)