TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF672808.1|CF672808 RTCNT1_74_C07.b1_A029 Root control P... 199 1e-050
gb|DR025214.1|DR025214 STRS1_70_G04.b1_A034 Shoot tip pitch... 199 1e-050
gb|CF388767.1|CF388767 RTDR2_15_E07.g1_A021 Loblolly pine r... 186 2e-046
gb|CF393340.1|CF393340 RTDR3_20_H04.g1_A022 Loblolly pine r... 186 2e-046
gb|CF472959.1|CF472959 RTDS1_12_B12.g1_A015 Drought-stresse... 186 2e-046
gb|CO172219.1|CO172219 NDL1_28_E08.b1_A029 Needles control ... 186 2e-046
gb|CO370336.1|CO370336 RTK1_67_E12.b1_A029 Roots minus pota... 186 2e-046
gb|DN461230.1|DN461230 EST957029 Sequencing ESTs from loblo... 186 2e-046
gb|DR095604.1|DR095604 STRR1_22_G11.b1_A033 Stem Response R... 186 2e-046
gb|DR688124.1|DR688124 EST1078208 Normalized pine embryo li... 186 2e-046
emb|AJ864706.1| Pinus taeda mRNA for alpha-1,6-xylosyltrans... 186 2e-046
gb|DR054099.1|DR054099 RTCA1_15_F05.b1_A029 Roots minus cal... 183 1e-045
gb|DR054885.1|DR054885 RTCA1_20_D12.b1_A029 Roots minus cal... 182 2e-045
gb|DR095677.1|DR095677 STRR1_22_G11.g1_A033 Stem Response R... 175 3e-043
gb|CF395890.1|CF395890 RTDS2_19_B03.g1_A021 Drought-stresse... 172 2e-042
gb|BF778026.1|BF778026 NXSI_081_A11_F NXSI (Nsf Xylem Side ... 170 1e-041
gb|DR048568.1|DR048568 RTBOR1_9_F06.g1_A029 Roots plus adde... 168 4e-041
gb|BM158356.1|BM158356 NXLV_033_B09_F NXLV (Nsf Xylem Late ... 160 6e-039
gb|BM133233.1|BM133233 NXLV_003_B06_F NXLV (Nsf Xylem Late ... 152 2e-036
gb|CV036345.1|CV036345 RTNACL1_58_C11.g1_A029 Roots plus ad... 150 1e-035
gb|BM368012.1|BM368012 NXLV_054_C10_F NXLV (Nsf Xylem Late ... 149 2e-035
gb|DR118257.1|DR118257 RTMG1_12_D08.b1_A029 Roots minus mag... 147 6e-035
gb|DR056665.1|DR056665 RTCA1_31_F06.g1_A029 Roots minus cal... 145 3e-034
gb|CO201179.1|CO201179 RTCNT2_4_D04.b1_A029 Root control 2 ... 141 6e-033
gb|AA739576.1|AA739576 341 PtIFG2 Pinus taeda cDNA clone 85... 102 1e-031
gb|BF777799.1|BF777799 NXSI_075_G11_F NXSI (Nsf Xylem Side ... 128 4e-029
gb|CO370167.1|CO370167 RTK1_65_H08.g1_A029 Roots minus pota... 117 6e-026
gb|BQ197428.1|BQ197428 NXLV114_C03_F NXLV (Nsf Xylem Late w... 112 2e-024
>gb|CF672808.1|CF672808 RTCNT1_74_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_C07_A029 3', mRNA sequence
Length = 679
Score = 199 bits (430), Expect = 1e-050
Identities = 73/111 (65%), Positives = 88/111 (79%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
+SQ KVF+E+SY+ HGFW VDKY M+ + GLGDERWPFVTHFVGCKPCGS
Sbjct: 72 ISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGS 251
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
YGDYPVERCL+SMERAFNFADNQ+L++YGF HK L + K+KR R++T P+
Sbjct: 252 YGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPL 404
Score = 121 bits (258), Expect = 6e-027
Identities = 59/91 (64%), Positives = 61/91 (67%)
Frame = +3 / -1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KP S WLSAKL A S+L RQRSTG*SP*LP GLHPTK*VTKGH SSP P W* I+
Sbjct: 346 CLKP*I*SIWLSAKLKALSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIM 167
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCE 659
SYLST QKP E S NTL F E
Sbjct: 166 SSYLSTTTTQKP*RKYELSRNTLSPQSFF*E 74
>gb|DR025214.1|DR025214 STRS1_70_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_G04_A034 3', mRNA sequence
Length = 820
Score = 199 bits (430), Expect = 1e-050
Identities = 73/111 (65%), Positives = 88/111 (79%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
+SQ KVF+E+SY+ HGFW VDKY M+ + GLGDERWPFVTHFVGCKPCGS
Sbjct: 216 ISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGS 395
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
YGDYPVERCL+SMERAFNFADNQ+L++YGF HK L + K+KR R++T P+
Sbjct: 396 YGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPL 548
Score = 121 bits (258), Expect = 6e-027
Identities = 59/91 (64%), Positives = 61/91 (67%)
Frame = +3 / -1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KP S WLSAKL A S+L RQRSTG*SP*LP GLHPTK*VTKGH SSP P W* I+
Sbjct: 490 CLKP*I*SIWLSAKLKALSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIM 311
Query: 567 XSYLSTXXAQKPCX**EFSMNTLXXXXSFCE 659
SYLST QKP E S NTL F E
Sbjct: 310 SSYLSTTTTQKP*RKYELSRNTLSPQSFF*E 218
>gb|CF388767.1|CF388767 RTDR2_15_E07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_E07_A021 5', mRNA
sequence
Length = 716
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 210 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 389
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 390 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 566
>gb|CF393340.1|CF393340 RTDR3_20_H04.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_H04_A022 5', mRNA
sequence
Length = 792
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 120 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 299
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 300 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 476
>gb|CF472959.1|CF472959 RTDS1_12_B12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_B12_A015 5', mRNA sequence
Length = 793
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 34 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 213
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 214 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 390
>gb|CO172219.1|CO172219 NDL1_28_E08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_28_E08_A029 3', mRNA sequence
Length = 687
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 36 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 215
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 216 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 392
>gb|CO370336.1|CO370336 RTK1_67_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_E12_A029 3', mRNA sequence
Length = 778
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 82 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 261
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 262 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 438
>gb|DN461230.1|DN461230 EST957029 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII789 5' end, mRNA sequence
Length = 917
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 195 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 374
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 375 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 551
>gb|DR095604.1|DR095604 STRR1_22_G11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_22_G11_A033 3', mRNA sequence
Length = 815
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / -3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 759 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 580
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 579 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 403
>gb|DR688124.1|DR688124 EST1078208 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC107 3' end, mRNA sequence
Length = 790
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 419 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 598
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 599 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 775
>emb|AJ864706.1| Pinus taeda mRNA for alpha-1,6-xylosyltransferase (x34.1 gene)
Length = 1473
Score = 186 bits (400), Expect = 2e-046
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 967 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 1146
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 1147 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 1323
>gb|DR054099.1|DR054099 RTCA1_15_F05.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_15_F05_A029 3', mRNA sequence
Length = 539
Score = 183 bits (394), Expect = 1e-045
Identities = 66/119 (55%), Positives = 85/119 (71%)
Frame = -2 / -2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 469 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 290
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S + R R+ T +P+ + L +
Sbjct: 289 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVXRTRNDTDKPLEVKDELGL 113
>gb|DR054885.1|DR054885 RTCA1_20_D12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_D12_A029 3', mRNA sequence
Length = 755
Score = 182 bits (393), Expect = 2e-045
Identities = 66/119 (55%), Positives = 85/119 (71%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 34 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 213
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDYPV +CLR MERAFNF DNQ+ ++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 214 VGDYPVAQCLRQMERAFNFGDNQIPQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 390
>gb|DR095677.1|DR095677 STRR1_22_G11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_22_G11_A033 5', mRNA sequence
Length = 737
Score = 175 bits (376), Expect = 3e-043
Identities = 63/104 (60%), Positives = 76/104 (73%)
Frame = -2 / -2
Query: 616 SYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMER 437
+YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG GDYPV +CLR MER
Sbjct: 730 AYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMER 551
Query: 436 AFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
AFNF DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 550 AFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 419
>gb|CF395890.1|CF395890 RTDS2_19_B03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_B03_A021 5', mRNA sequence
Length = 537
Score = 172 bits (370), Expect = 2e-042
Identities = 61/97 (62%), Positives = 74/97 (76%)
Frame = -2 / +2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
++Q + KV++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG
Sbjct: 239 ITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGK 418
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLES 371
GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S
Sbjct: 419 VGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSS 529
>gb|BF778026.1|BF778026 NXSI_081_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_A11 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 307
Score = 170 bits (365), Expect = 1e-041
Identities = 61/100 (61%), Positives = 73/100 (73%)
Frame = -2 / +2
Query: 628 FIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLR 449
++E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG GDYPV +CLR
Sbjct: 2 YLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLR 181
Query: 448 SMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPI 329
MERAFNF DNQ + Y F+HK L S +KR R+ T +P+
Sbjct: 182 QMERAFNFGDNQXXQXYXFTHKSLXSRGVKRTRNDTDKPL 301
>gb|DR048568.1|DR048568 RTBOR1_9_F06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_9_F06_A029 5', mRNA sequence
Length = 779
Score = 168 bits (361), Expect = 4e-041
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = -2 / -1
Query: 583 VDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLR 404
VDKY M+ + GLGDERWPFVTHFVGCKPCGSYGDYPVERCL+SMERAFNFADNQ+L+
Sbjct: 773 VDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQILQ 594
Query: 403 LYGFSHKGLESPKIKRFRDQTTRPI 329
+YGF HK L + K+KR R++T P+
Sbjct: 593 IYGFKHKSLNTAKVKRTRNETASPL 519
Score = 107 bits (229), Expect = 6e-023
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = +3 / +1
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C KP S WLSAKL A S+L RQRSTG*SP*LP GLHPTK*VTKGH SSP P W* I+
Sbjct: 577 CLKP*I*SIWLSAKLKALSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIM 756
Query: 567 XSYLST 584
SYLST
Sbjct: 757 SSYLST 774
>gb|BM158356.1|BM158356 NXLV_033_B09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_033_B09 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 710
Score = 160 bits (345), Expect = 6e-039
Identities = 59/99 (59%), Positives = 71/99 (71%)
Frame = -2 / +1
Query: 601 GFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFA 422
G+W V KY MME H GLGD RWP VTHFVGCKPCG GDYPV +CLR MERAFNF
Sbjct: 19 GYWGILVVKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFG 198
Query: 421 DNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
DNQ+L++YGF+HK L S +KR R+ T +P+ + L +
Sbjct: 199 DNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGL 315
>gb|BM133233.1|BM133233 NXLV_003_B06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_003_B06 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 278
Score = 152 bits (327), Expect = 2e-036
Identities = 55/85 (64%), Positives = 62/85 (72%)
Frame = -2 / +2
Query: 625 IENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRS 446
+E++YY HG+W VDKY MME H GLGD RWP VTHFVGCKPCG GDYPV +CLR
Sbjct: 17 VESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQ 196
Query: 445 MERAFNFADNQVLRLYGFSHKGLES 371
MERAFNF DNQ + F+HK L S
Sbjct: 197 MERAFNFGDNQXXQXXXFTHKSLXS 271
>gb|CV036345.1|CV036345 RTNACL1_58_C11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_C11_A029 5', mRNA sequence
Length = 691
Score = 150 bits (322), Expect = 1e-035
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = -2 / +2
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
+SQ KVF+E+SY+ HGFW VDKY M+ + GLGDERWPFVTHFVGCKPCGS
Sbjct: 452 ISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGS 631
Query: 481 YGDYPVERCLRSMERAFNFA 422
Y DYPVERCL+SMERAFNFA
Sbjct: 632 YRDYPVERCLKSMERAFNFA 691
Score = 103 bits (219), Expect = 2e-021
Identities = 51/79 (64%), Positives = 53/79 (67%)
Frame = +3 / -2
Query: 423 AKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSYLSTXXAQKP 602
AKL A S+L RQRSTG*S *LP GLHPTK*VTKGH SSP P W* I+ SYLST QKP
Sbjct: 690 AKLKALSILFRQRSTG*SR*LPQGLHPTK*VTKGHLSSPSPGW*VRIMSSYLSTTTTQKP 511
Query: 603 CX**EFSMNTLXXXXSFCE 659
E S NTL F E
Sbjct: 510 *RKYELSRNTLSPQSFF*E 454
>gb|BM368012.1|BM368012 NXLV_054_C10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_054_C10 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 149 bits (319), Expect = 2e-035
Identities = 53/70 (75%), Positives = 62/70 (88%)
Frame = -2 / +3
Query: 538 GDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIK 359
GDERWPFVTHFVGCKPCGSYGDYPVERCL+SMERAFNFADNQ+L++YGF HK L + K+K
Sbjct: 51 GDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTXKVK 230
Query: 358 RFRDQTTRPI 329
R ++T P+
Sbjct: 231 RTXNETASPL 260
>gb|DR118257.1|DR118257 RTMG1_12_D08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_12_D08_A029 3', mRNA sequence
Length = 728
Score = 147 bits (316), Expect = 6e-035
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = -2 / +1
Query: 565 MMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSH 386
MME H GLGD RWP VTHFVGCKPCG GDYPV +CLR MERAFNF DNQ+L++YGF+H
Sbjct: 1 MMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTH 180
Query: 385 KGLESPKIKRFRDQTTRPINDVENLDM 305
K L S +KR R+ T +P+ + L +
Sbjct: 181 KSLSSRGVKRTRNDTDKPLEVKDELGL 261
>gb|DR056665.1|DR056665 RTCA1_31_F06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_F06_A029 5', mRNA sequence
Length = 597
Score = 145 bits (311), Expect = 3e-034
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = -2 / -2
Query: 562 MENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHK 383
ME H GLGD RWP VTHFVGCKPCG GDYPV +CLR MERAFNF DNQ+L++YGF+HK
Sbjct: 596 MEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHK 417
Query: 382 GLESPKIKRFRDQTTRPINDVENLDM 305
L S +KR R+ T +P+ + L +
Sbjct: 416 SLSSRGVKRTRNDTDKPLEVKDELGL 339
>gb|CO201179.1|CO201179 RTCNT2_4_D04.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_D04_A029 3', mRNA sequence
Length = 817
Score = 141 bits (302), Expect = 6e-033
Identities = 52/76 (68%), Positives = 59/76 (77%)
Frame = -2 / -1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
+SQ KVF+E+SY+ HGFW VDKY M+ + GLGDERWPFVTHFVGCKPCGS
Sbjct: 229 ISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGS 50
Query: 481 YGDYPVERCLRSMERA 434
YGDYPVERCL+SME A
Sbjct: 49 YGDYPVERCLKSMETA 2
Score = 100 bits (214), Expect = 8e-021
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = +3 / +3
Query: 435 ARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSYLSTXXAQKPCX** 614
A S+L RQRSTG*SP*LP GLHPTK*VTKGH SSP P W* I+ SYLST QKP
Sbjct: 3 AVSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIMSSYLSTTTTQKP*RKY 182
Query: 615 EFSMNTLXXXXSFCE 659
E S NTL F E
Sbjct: 183 ELSRNTLSPQSFF*E 227
>gb|AA739576.1|AA739576 341 PtIFG2 Pinus taeda cDNA clone 8559M 3', mRNA sequence
Length = 651
Score = 102 bits (218), Expect(2) = 1e-031
Identities = 39/56 (69%), Positives = 42/56 (75%)
Frame = -2 / +2
Query: 604 HGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMER 437
HGF VDKY M+ + GLGDER FV HFVGCKPCG YGDYPVERCL+SMER
Sbjct: 2 HGFXVVVVDKYENMIXTYHLGLGDERCLFVIHFVGCKPCGXYGDYPVERCLKSMER 169
Score = 53.8 bits (111), Expect(2) = 1e-031
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2 / +1
Query: 439 RAFNFADNQVLRLYGFSHKGLESPKIKRFRDQT 341
+AFNFADNQ ++YGF HK L + K+KR R++T
Sbjct: 166 KAFNFADNQXXQIYGFKHKSLNTAKVKRTRNET 264
>gb|BF777799.1|BF777799 NXSI_075_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_075_G11 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 443
Score = 128 bits (274), Expect = 4e-029
Identities = 46/75 (61%), Positives = 57/75 (76%)
Frame = -2 / +3
Query: 529 RWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFR 350
RWP VTHFVGCKPCG GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R
Sbjct: 6 RWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTR 185
Query: 349 DQTTRPINDVENLDM 305
+ T +P+ + L +
Sbjct: 186 NDTDKPLEVKDELGL 230
>gb|CO370167.1|CO370167 RTK1_65_H08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H08_A029 5', mRNA sequence
Length = 668
Score = 117 bits (251), Expect = 6e-026
Identities = 43/71 (60%), Positives = 54/71 (76%)
Frame = -2 / -1
Query: 517 VTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTT 338
VTHFVGCKPCG GDYPV +CLR MERAFNF DNQ+L++YGF+HK L S +KR R+ T
Sbjct: 668 VTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTD 489
Query: 337 RPINDVENLDM 305
+P+ + L +
Sbjct: 488 KPLEVKDELGL 456
>gb|BQ197428.1|BQ197428 NXLV114_C03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV114_C03 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 208
Score = 112 bits (240), Expect = 2e-024
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = -2 / +1
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KVF+E+SY+ HGFW VDKY M+ + GLGDERWPFVTHFVGC CGSYG YPV+ C
Sbjct: 16 KVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCMLCGSYGYYPVDPC 195
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 312,017,943
Number of Sequences: 355925
Number of extensions: 3928282
Number of successful extensions: 28886
Number of sequences better than 1.0e-020: 37
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9327752585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)