TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441058.2.1
         (1000 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF478585.1|CF478585  RTWW3_16_G03.b1_A022 Well-watered lo...   171   7e-042
gb|CX713426.1|CX713426  RTPQ1_9_D07.b1_A032 Roots treated wi...   143   2e-033
gb|BM133196.1|BM133196  NXLV_001_E01_F NXLV (Nsf Xylem Late ...   111   8e-024

>gb|CF478585.1|CF478585 RTWW3_16_G03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
           taeda cDNA clone RTWW3_16_G03_A022 3', mRNA sequence
          Length = 569

 Score =  171 bits (368), Expect = 7e-042
 Identities = 72/110 (65%), Positives = 89/110 (80%)
 Frame = +1 / +3

                                                                       
Query: 421 KVHPTSKIGPNVSISANARVGAGARLINCIILDDVEIMENAVVIHSIVGWKSSIGKWSRV 600
           K+HPT+KIGPNVSISANAR+G G RL +CIILDDVE+ +NA+V+H+I+GWK+SIGKW+RV
Sbjct: 3   KIHPTAKIGPNVSISANARIGPGVRLRDCIILDDVEVQDNAIVMHAIIGWKASIGKWARV 182

                                                             
Query: 601 QGEGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTLNVSVQEEIIL** 750
           QGE ++ AK GI+ILGEA          +S VLP+K LN SVQ EIIL**
Sbjct: 183 QGERNYGAKNGISILGEAVTVEDEVVVLSSTVLPHKALNQSVQGEIIL** 332



>gb|CX713426.1|CX713426 RTPQ1_9_D07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_9_D07_A032 3', mRNA sequence
          Length = 479

 Score =  143 bits (306), Expect = 2e-033
 Identities = 61/95 (64%), Positives = 73/95 (76%)
 Frame = +1 / +3

                                                                       
Query: 481 GAGARLINCIILDDVEIMENAVVIHSIVGWKSSIGKWSRVQGEGDHNAKLGITILGEAXX 660
           GAG R+I CIILDDVE+ EN++V+HSIVGWKSSIG+WSRVQGE ++ +KLGITILGE   
Sbjct: 3   GAGVRMIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVT 182

                                              
Query: 661 XXXXXXXXNSIVLPNKTLNVSVQEEIIL**PSFFV 765
                   N IVLP+K LN+SVQEEIIL*    F+
Sbjct: 183 VEDEVVVANCIVLPHKMLNMSVQEEIIL*LVLIFI 287



>gb|BM133196.1|BM133196 NXLV_001_E01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
           clone NXLV_001_E01 5' similar to Arabidopsis thaliana
           sequence At1g74910 putative GDP-mannose
           pyrophosphorylase see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 451

 Score =  111 bits (237), Expect = 8e-024
 Identities = 48/77 (62%), Positives = 58/77 (75%)
 Frame = +1 / +1

                                                                       
Query: 535 ENAVVIHSIVGWKSSIGKWSRVQGEGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTL 714
           EN++V+HSIVGWKSSIG+WSRVQGE ++ +KLGITILGE           N IVLP+K L
Sbjct: 22  ENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVTVEDEVVAANCIVLPHKML 201

                            
Query: 715 NVSVQEEIIL**PSFFV 765
           N+SVQEEIIL*    F+
Sbjct: 202 NMSVQEEIIL*LVLIFI 252



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 521,533,340
Number of Sequences: 355925
Number of extensions: 7409830
Number of successful extensions: 35712
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14943719880
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)