TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440419.2.1
         (616 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF667349.1|CF667349  RTCNT1_29_D09.g1_A029 Root control P...   107   2e-036
>gb|CF667349.1|CF667349 RTCNT1_29_D09.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_29_D09_A029 5', mRNA sequence
          Length = 809

 Score =  107 bits (229), Expect(3) = 2e-036
 Identities = 36/73 (49%), Positives = 48/73 (65%)
 Frame = -3 / -2

                                                                       
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
           NL +PP +NT  +FP GWT +RF+ADNPGVW+ HCHIE H  +GMGV+F E    + ++P
Sbjct: 592 NLINPPKKNTVALFPSGWTAIRFIADNPGVWSLHCHIEAHFFLGMGVVFEEGARKIGRLP 413

                        
Query: 161 NEAVSCGAXATAL 123
              + CG     L
Sbjct: 412 RSILGCGGSKAFL 374

 Score = 48.3 bits (99), Expect(3) = 2e-036
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3 / -2

                           
Query: 440 SEVHPWHLHGHDFWVL 393
           SE+HPWH HGHDFWVL
Sbjct: 688 SEIHPWHFHGHDFWVL 641

 Score = 34.5 bits (69), Expect(3) = 2e-036
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3 / -2

                                        
Query: 539 NPNTTAGDNVYVLAHNTTVDVLLQNANAL 453
           N N   G+ VY L  N+TVDV+LQN   L
Sbjct: 784 NSNARYGNPVYRLEFNSTVDVILQNGKKL 698
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 247,287,853
Number of Sequences: 355925
Number of extensions: 3027315
Number of successful extensions: 45091
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8303856210
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)