TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 88... 166 1e-040
gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side ... 166 1e-040
gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side ... 166 1e-040
gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciat... 166 1e-040
gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for... 166 1e-040
gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C fo... 166 1e-040
gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus adde... 166 1e-040
gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus adde... 166 1e-040
gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo li... 166 1e-040
gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo li... 166 1e-040
gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side ... 163 8e-040
gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus cal... 161 4e-039
gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus cal... 161 4e-039
gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood... 160 6e-039
gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side ... 155 2e-037
gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side ... 153 9e-037
gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side ... 141 4e-033
gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciat... 123 1e-027
gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clon... 113 6e-026
gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pin... 116 2e-025
gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root w... 108 3e-024
gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciat... 110 8e-024
gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood... 104 5e-022
gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for... 102 3e-021
>gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 8887r, mRNA sequence
Length = 667
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 38 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 217
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 218 LNYNTLERSETS* 256
>gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_A08 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 48 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 227
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 228 LNYNTLERSETS* 266
>gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 40 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 219
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 220 LNYNTLERSETS* 258
>gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122E04, mRNA sequence
Length = 615
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 74 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 253
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 254 LNYNTLERSETS* 292
>gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 5', mRNA sequence
Length = 552
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 22 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 201
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 202 LNYNTLERSETS* 240
>gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G04_A029 5', mRNA sequence
Length = 808
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / -3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 461 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 282
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 281 LNYNTLERSETS* 243
>gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 3', mRNA sequence
Length = 550
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 41 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 220
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 221 LNYNTLERSETS* 259
>gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 5', mRNA sequence
Length = 528
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 22 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 201
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 202 LNYNTLERSETS* 240
>gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC887 3' end, mRNA sequence
Length = 503
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 8 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 187
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 188 LNYNTLERSETS* 226
>gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG860 3' end, mRNA sequence
Length = 511
Score = 166 bits (357), Expect = 1e-040
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 16 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 195
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 196 LNYNTLERSETS* 234
>gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_G01 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 163 bits (351), Expect = 8e-040
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIEKL
Sbjct: 31 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXRMLMTHVDLIEKL 210
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 211 LNYNTLERSETS* 249
>gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 3', mRNA sequence
Length = 769
Score = 161 bits (346), Expect = 4e-039
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVR FTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 49 KMIIPVRFFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 228
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 229 LNYNTLERSETS* 267
>gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 5', mRNA sequence
Length = 771
Score = 161 bits (346), Expect = 4e-039
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVR FTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 44 KMIIPVRFFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 223
Query: 330 LNYNTLEKTETS* 292
LNYNTLE++ETS*
Sbjct: 224 LNYNTLERSETS* 262
>gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_157_C09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 160 bits (345), Expect = 6e-039
Identities = 65/73 (89%), Positives = 68/73 (93%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIEKL
Sbjct: 30 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXRMLMTHVDLIEKL 209
Query: 330 LNYNTLEKTETS* 292
LNYNTL ++ETS*
Sbjct: 210 LNYNTLXRSETS* 248
>gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 155 bits (334), Expect = 2e-037
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIEKL
Sbjct: 21 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIEKL 200
Query: 330 LNYNTLEKTETS* 292
LNYNT ++ETS*
Sbjct: 201 LNYNTXXRSETS* 239
>gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 280
Score = 153 bits (329), Expect = 9e-037
Identities = 61/71 (85%), Positives = 64/71 (90%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIEKL
Sbjct: 48 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIEKL 227
Query: 330 LNYNTLEKTET 298
LNYNT ++ET
Sbjct: 228 LNYNTXXRSET 260
>gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_G07 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 141 bits (303), Expect = 4e-033
Identities = 56/64 (87%), Positives = 57/64 (89%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIEK
Sbjct: 40 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIEKX 219
Query: 330 LNYN 319
NYN
Sbjct: 220 XNYN 231
>gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G01 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 477
Score = 123 bits (263), Expect = 1e-027
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3 / +3
Query: 459 KWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
KWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 3 KWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 170
>gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clone RN63C03, mRNA sequence
Length = 595
Score = 113 bits (242), Expect(2) = 6e-026
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = -3 / +1
Query: 447 YLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 76 YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 231
Score = 23.5 bits (45), Expect(2) = 6e-026
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +2
Query: 486 FTCGKVIG 463
FTCGKVIG
Sbjct: 44 FTCGKVIG 67
>gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_F04_A029 3', mRNA sequence
Length = 840
Score = 116 bits (247), Expect = 2e-025
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -3 / +2
Query: 453 DLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
D YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 395 DTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 556
>gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_H06 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 108 bits (230), Expect(2) = 3e-024
Identities = 45/56 (80%), Positives = 46/56 (82%)
Frame = -3 / +2
Query: 498 PVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
P F KVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIEKL
Sbjct: 77 PRSMFHLRKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCMRMLMTHVDLIEKL 244
Score = 23.5 bits (45), Expect(2) = 3e-024
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 327 NYNTLEKTETS* 292
NYNTL ++ETS*
Sbjct: 249 NYNTLXRSETS* 284
>gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035A03 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 466
Score = 110 bits (235), Expect = 8e-024
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -3 / +2
Query: 444 LDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
LDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 2 LDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 154
>gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_158_B04 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 160
Score = 104 bits (222), Expect = 5e-022
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCC 373
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+E DALDA L RYCC
Sbjct: 23 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEXDALDAXXLVRYCC 160
>gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 3', mRNA sequence
Length = 426
Score = 102 bits (217), Expect = 3e-021
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -3 / +2
Query: 432 QADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
QADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 2 QADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 142
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 281,865,289
Number of Sequences: 355925
Number of extensions: 3394484
Number of successful extensions: 32563
Number of sequences better than 1.0e-020: 35
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8195309070
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)