TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch... 199 1e-050
gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch... 197 5e-050
gb|AW754572.1|AW754572 PC03H01 Pine TriplEx pollen cone lib... 195 2e-049
gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus cal... 194 3e-049
gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo li... 194 4e-049
gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control P... 191 4e-048
gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potas... 191 4e-048
gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus p... 191 4e-048
gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pin... 190 8e-048
gb|CF666393.1|CF666393 RTCNT1_23_A10.b1_A029 Root control P... 188 2e-047
gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus cal... 188 2e-047
gb|DR099363.1|DR099363 STRR1_55_C05.b1_A033 Stem Response R... 185 3e-046
gb|DR068670.1|DR068670 RTDK1_2_E04.b1_A029 Roots, dark Pinu... 183 9e-046
gb|DR099098.1|DR099098 STRR1_53_D05.b1_A033 Stem Response R... 182 1e-045
gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control P... 178 2e-044
gb|AW290744.1|AW290744 NXNV046D07F Nsf Xylem Normal wood Ve... 177 8e-044
gb|CD027404.1|CD027404 NXNV046D07 Nsf Xylem Normal wood Ver... 177 8e-044
gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered lo... 176 1e-043
gb|BF518339.1|BF518339 NXSI_038_B12_F NXSI (Nsf Xylem Side ... 167 6e-041
gb|CO162092.1|CO162092 FLD1_33_D11.b1_A029 Root flooded Pin... 161 3e-039
gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response R... 154 6e-037
gb|AW064907.1|AW064907 ST37C08 Pine TriplEx shoot tip libra... 140 8e-033
gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response R... 112 2e-024
>gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 3', mRNA sequence
Length = 755
Score = 199 bits (429), Expect = 1e-050
Identities = 76/104 (73%), Positives = 89/104 (85%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 198 NLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIKPYLPLVDAFVAAWLPGTEGQGVTD 377
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
V+FGDYGF G LPRTWFKSVDQLPMN GD+HYDPLFPLGFGLTT
Sbjct: 378 VIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLTT 509
>gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_B11_A034 3', mRNA sequence
Length = 869
Score = 197 bits (425), Expect = 5e-050
Identities = 75/104 (72%), Positives = 89/104 (85%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 392 NLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIKPYLPLVDAFVAAWLPGTEGQGVTD 571
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
V+FGDYGF G LPRTWFKSVDQLPMN GD+HYDPLFPLGFGL+T
Sbjct: 572 VIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLST 703
>gb|AW754572.1|AW754572 PC03H01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03H01, mRNA sequence
Length = 505
Score = 195 bits (420), Expect = 2e-049
Identities = 75/104 (72%), Positives = 85/104 (81%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI VCG+V C +L+SGRP+VI P+L V A VAAWLPGSEGQG+TD
Sbjct: 66 NLNLTIPLGGDDTINNVCGSVKCLVILVSGRPLVITPYLPLVEAFVAAWLPGSEGQGVTD 245
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
V+FGDYGF G L RTWFKSVDQLPMN GD+HYDPLFP GFGLTT
Sbjct: 246 VIFGDYGFQGKLSRTWFKSVDQLPMNVGDKHYDPLFPFGFGLTT 377
>gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B12_A029 3', mRNA sequence
Length = 623
Score = 194 bits (419), Expect = 3e-049
Identities = 75/104 (72%), Positives = 85/104 (81%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI VCG+V C +L+SGRP+VI P+L V A VAAWLPGSEGQG+TD
Sbjct: 191 NLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVITPYLPLVEAFVAAWLPGSEGQGVTD 370
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
V+FGDYGF G L RTWFKSVDQLPMN GD+HYDPLFP GFGLTT
Sbjct: 371 VIFGDYGFQGKLSRTWFKSVDQLPMNVGDKHYDPLFPFGFGLTT 502
>gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA729, mRNA sequence
Length = 896
Score = 194 bits (418), Expect = 4e-049
Identities = 74/103 (71%), Positives = 87/103 (84%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
+ NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 464 NFNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTD 285
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGD+GF G LPRTWFKSVDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 284 VIFGDHGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT 156
>gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 3', mRNA sequence
Length = 692
Score = 191 bits (411), Expect = 4e-048
Identities = 73/103 (70%), Positives = 86/103 (83%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+EGQG+TD
Sbjct: 211 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTEGQGVTD 390
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGD GF G L RTWFKSVDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 391 VIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT 519
Score = 101 bits (215), Expect = 4e-021
Identities = 48/83 (57%), Positives = 54/83 (65%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 467 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 288
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P GIV+
Sbjct: 287 ITRHFTEPHTFLIVSAPPKGIVK 219
>gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_G05_A029 5', mRNA sequence
Length = 743
Score = 191 bits (411), Expect = 4e-048
Identities = 73/103 (70%), Positives = 86/103 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+EGQG+TD
Sbjct: 465 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTEGQGVTD 286
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGD GF G L RTWFKSVDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 285 VIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT 157
Score = 101 bits (215), Expect = 4e-021
Identities = 48/83 (57%), Positives = 54/83 (65%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 209 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 388
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P GIV+
Sbjct: 389 ITRHFTEPHTFLIVSAPPKGIVK 457
>gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_B02_A029 3', mRNA sequence
Length = 666
Score = 191 bits (411), Expect = 4e-048
Identities = 73/103 (70%), Positives = 86/103 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+EGQG+TD
Sbjct: 186 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTEGQGVTD 365
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGD GF G L RTWFKSVDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 366 VIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT 494
Score = 101 bits (215), Expect = 4e-021
Identities = 48/83 (57%), Positives = 54/83 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 442 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 263
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P GIV+
Sbjct: 262 ITRHFTEPHTFLIVSAPPKGIVK 194
>gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_D11_A029 5', mRNA sequence
Length = 846
Score = 190 bits (409), Expect = 8e-048
Identities = 73/102 (71%), Positives = 86/102 (84%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+TVCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 250 NLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTD 429
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGL 306
V+FGDY F G L RTWFKSVDQLPMN GD+HYDPLFPLGFGL
Sbjct: 430 VIFGDYRFQGKLARTWFKSVDQLPMNIGDQHYDPLFPLGFGL 555
>gb|CF666393.1|CF666393 RTCNT1_23_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_A10_A029 3', mRNA sequence
Length = 696
Score = 188 bits (406), Expect = 2e-047
Identities = 73/100 (73%), Positives = 84/100 (84%)
Frame = +1 / +2
Query: 7 NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVL 186
NLTIP G TI+TVCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TDV+
Sbjct: 2 NLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVI 181
Query: 187 FGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGL 306
FGDY F G L RTWFKSVDQLPMN GD+HYDPLFPLGFGL
Sbjct: 182 FGDYRFQGKLARTWFKSVDQLPMNIGDQHYDPLFPLGFGL 301
>gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_C09_A029 3', mRNA sequence
Length = 714
Score = 188 bits (406), Expect = 2e-047
Identities = 72/103 (69%), Positives = 85/103 (82%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+EGQG+TD
Sbjct: 271 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTEGQGVTD 450
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGD GF G L RTWFK VDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 451 VIFGDQGFRGKLSRTWFKRVDQLPMNVGDKHYDPLFPLGFGLT 579
Score = 101 bits (216), Expect = 3e-021
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 527 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 348
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P +GIV+
Sbjct: 347 ITRHFTEPHTFLIVSAPPNGIVK 279
>gb|DR099363.1|DR099363 STRR1_55_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_C05_A033 3', mRNA sequence
Length = 665
Score = 185 bits (398), Expect = 3e-046
Identities = 70/104 (67%), Positives = 86/104 (82%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG+EG+G+TD
Sbjct: 101 NLNLTIPMGGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGRGVTD 280
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTT 312
V+FGDY F G LPRTWF++VDQLPMN GD+ Y PLFPLGFGLTT
Sbjct: 281 VIFGDYDFEGKLPRTWFRNVDQLPMNVGDKRYHPLFPLGFGLTT 412
>gb|DR068670.1|DR068670 RTDK1_2_E04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_E04_A029 3', mRNA sequence
Length = 394
Score = 183 bits (394), Expect = 9e-046
Identities = 72/103 (69%), Positives = 83/103 (80%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
+ NLTIP G TI+ V G++ C +LISGRP+VI+P+L V A V AWL G EGQG+TD
Sbjct: 6 NFNLTIPLSGGDTIKNVWGSLKCLVILISGRPLVIKPYLPLVDAFVDAWLSGIEGQGVTD 185
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGDYGF G LPRTWFKSVDQLPMN GD+HYDPLFPLGFGLT
Sbjct: 186 VIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT 314
>gb|DR099098.1|DR099098 STRR1_53_D05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D05_A033 3', mRNA sequence
Length = 672
Score = 182 bits (393), Expect = 1e-045
Identities = 69/103 (66%), Positives = 85/103 (82%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG+EG+G+TD
Sbjct: 108 NLNLTIPMGGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGRGVTD 287
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLT 309
V+FGDY F G LPRTWF++VDQLPMN GD+ Y PLFPLGFGLT
Sbjct: 288 VIFGDYDFEGKLPRTWFRNVDQLPMNVGDKRYHPLFPLGFGLT 416
>gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 5', mRNA sequence
Length = 713
Score = 178 bits (384), Expect = 2e-044
Identities = 68/98 (69%), Positives = 81/98 (82%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+EGQG+TD
Sbjct: 419 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTEGQGVTD 598
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPL 294
V+FGD GF G L RTWFKSVDQLPMN GD+HYDPLFPL
Sbjct: 599 VIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 712
Score = 101 bits (215), Expect = 4e-021
Identities = 48/83 (57%), Positives = 54/83 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 675 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 496
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P GIV+
Sbjct: 495 ITRHFTEPHTFLIVSAPPKGIVK 427
>gb|AW290744.1|AW290744 NXNV046D07F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046D07 5', mRNA sequence
Length = 391
Score = 177 bits (380), Expect = 8e-044
Identities = 69/101 (68%), Positives = 81/101 (80%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+TVCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 51 NLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTD 230
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFG 303
V+FGDY F G L RTWFKSVDQLPMN D HY LFPLGFG
Sbjct: 231 VIFGDYRFXGKLARTWFKSVDQLPMNIXDXHYXXLFPLGFG 353
>gb|CD027404.1|CD027404 NXNV046D07 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046D07 5' similar to Arabidopsis thaliana sequence
At5g20950 beta-D-glucan exohydrolase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 177 bits (380), Expect = 8e-044
Identities = 69/101 (68%), Positives = 81/101 (80%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+TVCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TD
Sbjct: 51 NLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTD 230
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFG 303
V+FGDY F G L RTWFKSVDQLPMN D HY LFPLGFG
Sbjct: 231 VIFGDYRFXGKLARTWFKSVDQLPMNIXDXHYXXLFPLGFG 353
>gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_H06_A021 5', mRNA sequence
Length = 777
Score = 176 bits (378), Expect = 1e-043
Identities = 67/98 (68%), Positives = 80/98 (81%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG+V C +LISGRP+VI+P+L + A VAAWLPG+ GQG+TD
Sbjct: 483 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIEPYLPLIDAFVAAWLPGTXGQGVTD 662
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPL 294
V+FGD GF G L RTWFKSVDQLPMN GD+HYDPLFPL
Sbjct: 663 VIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 776
Score = 101 bits (215), Expect = 4e-021
Identities = 48/83 (57%), Positives = 54/83 (65%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHV S P+KP*SPK TSV PWPS+PGSQAAT A R G IT+G P +
Sbjct: 739 FIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASINGR*GSITSGLPDIK 560
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T PHT +V P GIV+
Sbjct: 559 ITRHFTEPHTFLIVSAPPKGIVK 491
>gb|BF518339.1|BF518339 NXSI_038_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_038_B12 5' similar to Arabidopsis thaliana
sequence At5g20950 beta-D-glucan exohydrolase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 364
Score = 167 bits (359), Expect = 6e-041
Identities = 65/97 (67%), Positives = 77/97 (79%)
Frame = +1 / +2
Query: 16 IPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGD 195
IP G TI+TVCG++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TDV+FGD
Sbjct: 2 IPLGGGDTIKTVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGD 181
Query: 196 YGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGL 306
Y F G L RTWFK+V LPMN GD+HY LFPLGFGL
Sbjct: 182 YRFQGKLARTWFKNVXXLPMNIGDQHYXXLFPLGFGL 292
>gb|CO162092.1|CO162092 FLD1_33_D11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_D11_A029 3', mRNA sequence
Length = 644
Score = 161 bits (347), Expect = 3e-039
Identities = 61/83 (73%), Positives = 71/83 (85%)
Frame = +1 / +1
Query: 58 AVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKS 237
++ C +LISGRP+VI+P+L V A VAAWLPG+EGQG+TDV+FGDY F G L RTWFKS
Sbjct: 1 SLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYRFQGKLARTWFKS 180
Query: 238 VDQLPMNYGDEHYDPLFPLGFGL 306
VDQLPMN GD+HYDPLFPLGFGL
Sbjct: 181 VDQLPMNIGDQHYDPLFPLGFGL 249
>gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_63_D08_A033 5', mRNA sequence
Length = 467
Score = 154 bits (330), Expect = 6e-037
Identities = 60/86 (69%), Positives = 69/86 (80%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI VCG+V C +L+SGRP+VI P+L V A VAAWLPGSEGQG+TD
Sbjct: 207 NLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVITPYLPLVEAFVAAWLPGSEGQGVTD 386
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMN 258
V+FGDYGF G L RTWFKSVDQLPMN
Sbjct: 387 VIFGDYGFQGKLSRTWFKSVDQLPMN 464
>gb|AW064907.1|AW064907 ST37C08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST37C08, mRNA sequence
Length = 578
Score = 140 bits (300), Expect = 8e-033
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +1 / +2
Query: 94 PVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEH 273
P+V +P+L V A VAAWLPG+EGQG+TDV+FGDY F G L RTWFKS DQLPMN GD+
Sbjct: 2 PLVTEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYSFQGKLSRTWFKSADQLPMNAGDQQ 181
Query: 274 YDPLFPLGFGLTT 312
YDP FPLGFGLTT
Sbjct: 182 YDPQFPLGFGLTT 220
>gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_C05_A033 5', mRNA sequence
Length = 719
Score = 112 bits (239), Expect = 2e-024
Identities = 42/70 (60%), Positives = 56/70 (80%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
++NLTIP G TI+ VCG++ C +LISGRP+VI+P+L V A VAAWLPG++G+G+TD
Sbjct: 505 NLNLTIPMGGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTKGRGVTD 684
Query: 181 VLFGDYGFTG 210
V+FGDY F G
Sbjct: 685 VIFGDYDFEG 714
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 263,084,734
Number of Sequences: 355925
Number of extensions: 3345499
Number of successful extensions: 45861
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7544026230
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)