TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciat... 138 9e-036
gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciat... 138 1e-035
gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus adde... 138 1e-035
gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus m... 138 1e-035
gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch... 138 1e-035
gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pin... 138 1e-035
gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo lib... 138 1e-035
gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch... 138 1e-035
gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo li... 138 1e-035
gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo li... 138 3e-035
gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron... 131 2e-033
gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pi... 138 5e-032
gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo li... 138 5e-032
gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered lob... 127 2e-031
gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pin... 127 2e-031
gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus pota... 127 2e-031
gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus ad... 127 3e-031
gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Plani... 121 8e-029
gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciat... 125 5e-028
gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo li... 110 2e-023
gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Plani... 98 7e-023
>gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041H04, mRNA sequence
Length = 574
Score = 138 bits (297), Expect(2) = 9e-036
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 108 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 287
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 288 VREGIEIVV 314
Score = 34.5 bits (69), Expect(2) = 9e-036
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 303 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 395
>gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115D08 similar to P0677H08.7 protein, mRNA
sequence
Length = 627
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 122 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 301
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 302 VREGIEIVV 328
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 317 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 409
>gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_14_A08_A029 3', mRNA sequence
Length = 663
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 48 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 227
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 228 VREGIEIVV 254
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 243 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 335
>gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 3', mRNA sequence
Length = 698
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 57 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 236
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 237 VREGIEIVV 263
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 252 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 344
>gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 5', mRNA sequence
Length = 781
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 488 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 667
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 668 VREGIEIVV 694
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 683 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 775
>gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 3', mRNA sequence
Length = 857
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 109 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 288
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 289 VREGIEIVV 315
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 304 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 396
>gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA802, mRNA sequence
Length = 864
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 508 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 329
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 328 VREGIEIVV 302
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 313 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 221
>gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 3', mRNA sequence
Length = 867
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 263 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 442
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 443 VREGIEIVV 469
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 458 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 550
>gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEN33 3' end, mRNA sequence
Length = 873
Score = 138 bits (297), Expect(2) = 1e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 579 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 758
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 759 VREGIEIVV 785
Score = 34.5 bits (69), Expect(2) = 1e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 774 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 866
>gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC757 3' end, mRNA sequence
Length = 906
Score = 138 bits (297), Expect(2) = 3e-035
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 580 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 759
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 760 VREGIEIVV 786
Score = 33.6 bits (67), Expect(2) = 3e-035
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 775 EIVVSVGMSMPQLISVLERTSETVGRTRMNR 867
>gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D07_A029 3', mRNA sequence
Length = 723
Score = 131 bits (280), Expect(2) = 2e-033
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = +1 / +1
Query: 16 HPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREG 195
HPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS+REG
Sbjct: 1 HPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLSVREG 180
Query: 196 IGMVV 210
I +VV
Sbjct: 181 IEIVV 195
Score = 34.5 bits (69), Expect(2) = 2e-033
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNR 488
EI+VS GM+MPQ+I+ LE R+NR
Sbjct: 184 EIVVSVGMSMPQLISVLERTSETVDRTRMNR 276
>gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 771
Score = 138 bits (297), Expect = 5e-032
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 527 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 706
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 707 VREGIEIVV 733
>gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG18 3' end, mRNA sequence
Length = 753
Score = 138 bits (297), Expect = 5e-032
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 529 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLS 708
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 709 VREGIEIVV 735
>gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_D10_A021 5', mRNA sequence
Length = 734
Score = 127 bits (272), Expect(2) = 2e-031
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 42 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 221
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 222 VREGIEIVL 248
Score = 31.8 bits (63), Expect(2) = 2e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM+MP+V++S++
Sbjct: 237 EIVLSGGMSMPRVLSSMD 290
>gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_D05_A029 3', mRNA sequence
Length = 754
Score = 127 bits (272), Expect(2) = 2e-031
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 566 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 387
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 386 VREGIEIVL 360
Score = 31.8 bits (63), Expect(2) = 2e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM+MP+V++S++
Sbjct: 371 EIVLSGGMSMPRVLSSMD 318
>gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_E06_A029 5', mRNA sequence
Length = 774
Score = 127 bits (272), Expect(2) = 2e-031
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 595 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 416
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 415 VREGIEIVL 389
Score = 31.8 bits (63), Expect(2) = 2e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM+MP+V++S++
Sbjct: 400 EIVLSGGMSMPRVLSSMD 347
>gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_G04_A029 3', mRNA sequence
Length = 903
Score = 127 bits (272), Expect(2) = 3e-031
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 576 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 397
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 396 VREGIEIVL 370
Score = 31.8 bits (63), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM+MP+V++S++
Sbjct: 381 EIVLSGGMSMPRVLSSMD 328
>gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_E11 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 121 bits (259), Expect(2) = 8e-029
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 219 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 398
Query: 184 IREGIGMVV 210
+R I +V+
Sbjct: 399 VRXXIEIVL 425
Score = 28.6 bits (56), Expect(2) = 8e-029
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SG M+MP+V++S++
Sbjct: 414 EIVLSGXMSMPRVLSSMD 467
>gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020B10, mRNA sequence
Length = 698
Score = 125 bits (268), Expect = 5e-028
Identities = 51/65 (78%), Positives = 56/65 (86%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITS+V LQ D G+EEL VYVPTNHLYIGDIFL+NS RPNLS
Sbjct: 497 AIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLINSRDVIRPNLS 676
Query: 184 IREGI 198
+REGI
Sbjct: 677 VREGI 691
>gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC30 3' end, mRNA sequence
Length = 808
Score = 110 bits (235), Expect = 2e-023
Identities = 43/49 (87%), Positives = 47/49 (95%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLV 150
AIIRHPR+GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLV
Sbjct: 578 AIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLV 724
>gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_113_F09 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 98.2 bits (208), Expect(2) = 7e-023
Identities = 44/69 (63%), Positives = 51/69 (73%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII PR+ EYAFGFITS+V LQ D G+EEL VY TNHLYIGDIFL+NS NLS
Sbjct: 219 AIIXXPRMXEYAFGFITSSVALQNDVGEEELFCVYXXTNHLYIGDIFLINSRDVXXXNLS 398
Query: 184 IREGIGMVV 210
+R I +V+
Sbjct: 399 VRXXIEIVL 425
Score = 31.8 bits (63), Expect(2) = 7e-023
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM+MP+V++S++
Sbjct: 414 EIVLSGGMSMPRVLSSMD 467
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 562,990,448
Number of Sequences: 355925
Number of extensions: 8377287
Number of successful extensions: 67529
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15693583960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)