TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 215 4e-055
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 210 9e-054
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 209 2e-053
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 206 1e-052
gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus... 197 7e-050
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 196 2e-049
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 186 1e-046
gb|BG318466.1|BG318466 NXPV_013_H10_F NXPV (Nsf Xylem Plani... 186 2e-046
gb|BQ695893.1|BQ695893 NXPV_033_H04_F NXPV (Nsf Xylem Plani... 186 2e-046
gb|BQ696465.1|BQ696465 NXPV_041_F02_F NXPV (Nsf Xylem Plani... 186 2e-046
gb|BQ697291.1|BQ697291 NXPV_055_C02_F NXPV (Nsf Xylem Plani... 186 2e-046
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 106 2e-040
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 104 1e-037
gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus adde... 101 2e-037
gb|BG319401.1|BG319401 NXPV_027_E09_F NXPV (Nsf Xylem Plani... 154 6e-037
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 105 1e-036
gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus... 99 1e-036
gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C fo... 101 2e-036
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 102 3e-036
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 102 3e-036
gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added... 101 3e-036
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 100 1e-035
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 104 4e-035
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 104 4e-035
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 100 7e-035
gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control P... 99 2e-032
gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pin... 99 2e-032
gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus ad... 99 2e-032
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 96 4e-032
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 96 1e-031
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 96 1e-031
gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clon... 96 3e-031
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 95 7e-031
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 86 2e-030
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 86 2e-030
gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus add... 106 8e-030
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 91 2e-029
gb|DR088584.1|DR088584 RTAL1_3_A08.b1_A029 Roots plus added... 101 2e-028
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 101 4e-028
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 101 4e-028
gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine ro... 102 4e-028
gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip libra... 69 4e-028
gb|CF478150.1|CF478150 RTWW3_19_D01.b1_A022 Well-watered lo... 102 3e-025
gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control P... 96 9e-025
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 94 9e-025
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 67 2e-023
gb|DR118221.1|DR118221 RTMG1_11_H09.g1_A029 Roots minus mag... 103 2e-021
gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine ro... 102 2e-021
gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine ro... 102 2e-021
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 69 3e-021
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 69 3e-021
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 69 3e-021
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 69 3e-021
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 69 3e-021
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 69 3e-021
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 69 3e-021
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 69 3e-021
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 69 3e-021
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 69 3e-021
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 69 3e-021
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 69 3e-021
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 69 3e-021
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 69 3e-021
gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus ad... 101 6e-021
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 69 1e-020
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 215 bits (463), Expect = 4e-055
Identities = 83/113 (73%), Positives = 94/113 (83%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R LMNY+K+RYN+P V ITENGMDD N F ++ ALKD KRIKY YL+N+AA+IKED
Sbjct: 74 RSLMNYIKQRYNNPPVIITENGMDDSNDIFIPLKKALKDQKRIKYLTDYLSNLAAAIKED 253
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
GC+V GYF WSLLDNWEWAAGYTSRFGLYFVDYK NL RYPK+SVQWFK L+
Sbjct: 254 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKCFLA 412
Score = 88.1 bits (186), Expect(2) = 3e-022
Identities = 39/56 (69%), Positives = 41/56 (73%)
Frame = -2 / -2
Query: 330 LNHWTEFLGYXXXXXXXSTK*SPNLEVYPAAHSQLSSNDHAKYPRTSHPSSFMEAA 163
LNHWTE LGY STK*SPNLEVYPAAHSQLS+ DH K P T HPSS + AA
Sbjct: 399 LNHWTESLGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHPSSLIAAA 232
Score = 36.8 bits (74), Expect(2) = 3e-022
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1 / -1
Query: 109 VLDGGERAVAVVHPIFSDVNRWAIVPLLDIVHQLP 5
+ G E V V+HP+ D +R +V L ++H+ P
Sbjct: 178 LFQGNENIVGVIHPVLRDNDRRVVVTLFYVIHETP 74
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 210 bits (453), Expect = 9e-054
Identities = 81/113 (71%), Positives = 93/113 (82%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R LMNY+K RYN+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKED
Sbjct: 335 RSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKED 514
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
GC+V GYF WSLLDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 515 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 673
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 209 bits (450), Expect = 2e-053
Identities = 81/113 (71%), Positives = 92/113 (81%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R LMNY+K RYN+P V ITENGMDD N+ +++AL D KRIKYH YL+N+ A+IKED
Sbjct: 217 RSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLFAAIKED 396
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
GC+V GYF WSLLDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 397 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 555
>gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 5', mRNA sequence
Length = 794
Score = 206 bits (445), Expect = 1e-052
Identities = 79/113 (69%), Positives = 93/113 (82%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R LMNY+K+RYN+P V ITENGMDD N+ ++ AL D KRIKYH YL+N+AA+IK+D
Sbjct: 52 RSLMNYIKQRYNNPPVIITENGMDDSNNILIPLKKALNDQKRIKYHAHYLSNLAAAIKDD 231
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
GC V GYFAWSLLDNWEWAAGYTSRFGLYFVDY+ NL R+PK SV+WFK L+
Sbjct: 232 GCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCFLT 390
>gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 3', mRNA sequence
Length = 777
Score = 197 bits (425), Expect = 7e-050
Identities = 75/108 (69%), Positives = 89/108 (82%)
Frame = +2 / +2
Query: 20 YVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVR 199
Y+K+RYN+P V ITENGMDD N+ ++ AL D KRIKYH YL+N+AA+IK+DGC V
Sbjct: 2 YIKQRYNNPPVIITENGMDDSNNILIPLKKALNDQKRIKYHAHYLSNLAAAIKDDGCKVG 181
Query: 200 GYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
GYFAWSLLDNWEWAAGYTSRFGLYFVDY+ NL R+PK SV+WFK L+
Sbjct: 182 GYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCFLT 325
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 196 bits (422), Expect = 2e-049
Identities = 73/124 (58%), Positives = 93/124 (75%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R M Y+K+RY++P + ITENG+DD NSP S+ AL+D+KRI YH YL+N++ +I+ D
Sbjct: 164 RSSMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRND 343
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSSS*RRHT 364
GCDVRGYF WSLLDNWEW +G+T RFGLYFVDYK NL RYPK S WFK+ L S + T
Sbjct: 344 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSFLPKSKSKST 523
Query: 365 RTVI 376
+ +
Sbjct: 524 ASYL 535
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 186 bits (401), Expect = 1e-046
Identities = 68/107 (63%), Positives = 84/107 (78%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKED 184
R LM Y+K+RY++P ++ITENG+DD NSP S+ AL+D+KRI YH YL+N++ +I D
Sbjct: 218 RSLMIYIKQRYDNPPIFITENGIDDTNSPLISLDKALQDTKRIDYHRDYLSNLSVAIXXD 397
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQW 325
GCDVRGYF WSLLDNWEW +G+T RFGLYFVDY NL RYPK S W
Sbjct: 398 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKASADW 538
>gb|BG318466.1|BG318466 NXPV_013_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_013_H10 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 186 bits (400), Expect = 2e-046
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 41 SPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSL 220
+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKEDGC+V GYF WSL
Sbjct: 1 NPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKEDGCNVGGYFVWSL 180
Query: 221 LDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
LDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 181 LDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
>gb|BQ695893.1|BQ695893 NXPV_033_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_033_H04 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 186 bits (400), Expect = 2e-046
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 41 SPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSL 220
+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKEDGC+V GYF WSL
Sbjct: 1 NPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKEDGCNVGGYFVWSL 180
Query: 221 LDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
LDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 181 LDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
>gb|BQ696465.1|BQ696465 NXPV_041_F02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_F02 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 186 bits (400), Expect = 2e-046
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 41 SPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSL 220
+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKEDGC+V GYF WSL
Sbjct: 1 NPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKEDGCNVGGYFVWSL 180
Query: 221 LDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
LDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 181 LDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
>gb|BQ697291.1|BQ697291 NXPV_055_C02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_C02 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 186 bits (400), Expect = 2e-046
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +2 / +1
Query: 41 SPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSL 220
+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKEDGC+V GYF WSL
Sbjct: 1 NPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKEDGCNVGGYFVWSL 180
Query: 221 LDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
LDNWEWAAGYTSRFGLYFVDYK NL RYPK SVQWFK L+
Sbjct: 181 LDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 106 bits (227), Expect(2) = 2e-040
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +2 / +3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRGYFAWSL+DN+EW GYT RFGL FVDYKD+LKRYPK+S WF + L
Sbjct: 240 EGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSFL 398
Score = 79.4 bits (167), Expect(2) = 2e-040
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
RK++ ++ ERYN P +Y+TENGMDD +S T + AL D+KR+ Y GYL +A +I+E
Sbjct: 66 RKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKALAEAIRE 242
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 104 bits (221), Expect(2) = 1e-037
Identities = 36/54 (66%), Positives = 46/54 (85%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY AWSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 426 KEGADVRGYIAWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 587
Score = 73.0 bits (153), Expect(2) = 1e-037
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T +Q AL DS R+KYH+ +L+++ SIKE
Sbjct: 255 RDVINYTKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQSIKE 431
>gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 3', mRNA sequence
Length = 727
Score = 101 bits (216), Expect(2) = 2e-037
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2 / +1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 340 KEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 501
Score = 74.4 bits (156), Expect(2) = 2e-037
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY+K RYN+P +YITE G D ++ T +Q AL DS R+KYH+ +L+++ SIKE
Sbjct: 169 RDVINYIKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQSIKE 345
>gb|BG319401.1|BG319401 NXPV_027_E09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_E09 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 286
Score = 154 bits (331), Expect = 6e-037
Identities = 62/95 (65%), Positives = 72/95 (75%)
Frame = +2 / +1
Query: 41 SPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSL 220
+P V ITENGMDD N+ +++AL D KRIKYH YL+N++A+IKE GC+V GYF WSL
Sbjct: 1 NPPVIITENGMDDPNNILIPLKNALNDQKRIKYHAHYLSNLSAAIKEXGCNVGGYFVWSL 180
Query: 221 LDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQW 325
LDNWE AAGYTS FGL FVD K RYPK SVQW
Sbjct: 181 LDNWEXAAGYTSXFGLXFVDXKHXXTRYPKASVQW 285
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 105 bits (224), Expect(2) = 1e-036
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2 / +2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G D+RGY WSLLDN+EW+ GYT RFGLY+VDYKDNLKRYP+ S WF+ +L
Sbjct: 347 EGADIRGYLVWSLLDNFEWSFGYTYRFGLYYVDYKDNLKRYPRASANWFRNIL 505
Score = 68.0 bits (142), Expect(2) = 1e-036
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
+ ++NY K RYN+PT+Y+TE G D + T ++ AL DS+R+ YH+ +L+ + +I E
Sbjct: 173 KDIINYTKHRYNNPTIYVTETGYVDFDDGKTPLEQALNDSRRVMYHSEHLSELLEAISE 349
>gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 3', mRNA sequence
Length = 594
Score = 99.1 bits (210), Expect(2) = 1e-036
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVR Y WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 212 KEGADVRSYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 373
Score = 74.4 bits (156), Expect(2) = 1e-036
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY+K RYN+P +YITE G D ++ T +Q AL DS R+KYH+ +L+++ SIKE
Sbjct: 41 RDVINYIKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQSIKE 217
>gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_H11_A029 5', mRNA sequence
Length = 729
Score = 101 bits (216), Expect(2) = 2e-036
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 395 KEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 234
Score = 70.7 bits (148), Expect(2) = 2e-036
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +2 / -2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T +Q AL DS R+KYH+ +L+++ IKE
Sbjct: 566 RGVINYTKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQGIKE 390
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 102 bits (218), Expect(2) = 3e-036
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2 / +2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ LL S
Sbjct: 392 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLKS 556
Score = 69.3 bits (145), Expect(2) = 3e-036
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T +++AL DS+R++YH+ +L+ + +I+E
Sbjct: 218 RDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 394
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 102 bits (218), Expect(2) = 3e-036
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2 / +3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ LL S
Sbjct: 186 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLKS 350
Score = 69.3 bits (145), Expect(2) = 3e-036
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T +++AL DS+R++YH+ +L+ + +I+E
Sbjct: 12 RDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 188
>gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 3', mRNA sequence
Length = 558
Score = 101 bits (216), Expect(2) = 3e-036
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 218 KEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 379
Score = 70.3 bits (147), Expect(2) = 3e-036
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN P +YITE G D ++ T +Q AL DS R+KYH+ +L+++ IKE
Sbjct: 47 RGVINYTKHRYNDPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQGIKE 223
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 100 bits (214), Expect(2) = 1e-035
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +2 / +3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ ++ S
Sbjct: 180 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNIIKS 344
Score = 69.3 bits (145), Expect(2) = 1e-035
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T +++AL DS+R++YH+ +L+ + +I+E
Sbjct: 6 RDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 182
>gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 3', mRNA sequence
Length = 863
Score = 104 bits (222), Expect(2) = 4e-035
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2 / -3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G D+RGY WSLLDN+EWA GY RFGLY+VDYKDNLKRYPK S WF+ L
Sbjct: 390 EGADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREFL 232
Score = 63.8 bits (133), Expect(2) = 4e-035
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+ ++NY K RYN+P +Y+TE G D + T ++ AL DS+R+ YH+ +L+ + +I+
Sbjct: 650 KDIINYTKHRYNNPPLYVTETGYADFDDGTTPLEQALNDSRRVMYHSEHLSELLEAIR 477
>gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 5', mRNA sequence
Length = 849
Score = 104 bits (222), Expect(2) = 4e-035
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +2 / -3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G D+RGY WSLLDN+EWA GY RFGLY+VDYKDNLKRYPK S WF+ L
Sbjct: 379 EGADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREFL 221
Score = 63.8 bits (133), Expect(2) = 4e-035
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+ ++NY K RYN+P +Y+TE G D + T ++ AL DS+R+ YH+ +L+ + +I+
Sbjct: 639 KDIINYTKHRYNNPPLYVTETGYADFDDGTTPLEQALNDSRRVMYHSEHLSELLEAIR 466
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 100 bits (212), Expect(2) = 7e-035
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRGY AWSLLD+ EW++GY RFGL++VDY DNLKRY + S QWFKT+L
Sbjct: 538 EGADVRGYVAWSLLDSLEWSSGYNYRFGLHYVDYHDNLKRYARASAQWFKTIL 696
Score = 67.5 bits (141), Expect(2) = 7e-035
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R +++Y K RY++P +YITE+G D ++ T ++ AL DSKR+KYH +L+++ +I+E
Sbjct: 364 RDVISYTKHRYDNPPIYITESGYGDFDNGTTPLERALNDSKRVKYHYEHLSSLLQAIRE 540
>gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C01_A029 3', mRNA sequence
Length = 737
Score = 98.7 bits (209), Expect(2) = 2e-032
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +2 / +1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSSS*RR 358
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L +R
Sbjct: 223 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQR 402
Query: 359 HTRT 370
R+
Sbjct: 403 SIRS 414
Score = 61.1 bits (127), Expect(2) = 2e-032
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 52 QKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLNAAIK 225
>gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 5', mRNA sequence
Length = 738
Score = 98.7 bits (209), Expect(2) = 2e-032
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSSS*RR 358
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L +R
Sbjct: 493 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQR 314
Query: 359 HTRT 370
R+
Sbjct: 313 SIRS 302
Score = 61.1 bits (127), Expect(2) = 2e-032
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / -3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 664 QKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLNAAIK 491
>gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 3', mRNA sequence
Length = 707
Score = 98.7 bits (209), Expect(2) = 2e-032
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSSS*RR 358
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L +R
Sbjct: 320 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQR 499
Query: 359 HTRT 370
R+
Sbjct: 500 SIRS 511
Score = 61.1 bits (127), Expect(2) = 2e-032
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 149 QKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLNAAIK 322
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 96.4 bits (204), Expect(2) = 4e-032
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L
Sbjct: 477 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFL 638
Score = 62.0 bits (129), Expect(2) = 4e-032
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 306 QKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLTAAIK 479
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 96.4 bits (204), Expect(2) = 1e-031
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L
Sbjct: 505 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFL 344
Score = 60.6 bits (126), Expect(2) = 1e-031
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / -3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 676 QKIVEYVKEFYDNPTIIITENGYPESQEFSSTLQENLNDVRRIRFHGDCLSYLTAAIK 503
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 96.4 bits (204), Expect(2) = 1e-031
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L
Sbjct: 1518 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFL 1679
Score = 60.2 bits (125), Expect(2) = 1e-031
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ I ENG + +++Q+ L D +RI++H L+ ++A+IK
Sbjct: 1347 QKIVEYVKEFYDNPTIIIAENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLSAAIK 1520
>gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clone RS35H05, mRNA sequence
Length = 578
Score = 96.4 bits (204), Expect(2) = 3e-031
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L
Sbjct: 221 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFL 382
Score = 59.3 bits (123), Expect(2) = 3e-031
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++P + ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 50 QKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDVRRIRFHGDCLSYLTAAIK 223
>gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D06, mRNA sequence
Length = 675
Score = 95.0 bits (201), Expect(2) = 7e-031
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ KRYPK S QWF+ L
Sbjct: 362 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISAQKRYPKLSAQWFRQFL 523
Score = 59.3 bits (123), Expect(2) = 7e-031
Identities = 22/58 (37%), Positives = 39/58 (67%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++P + ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 191 QKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDVRRIRFHGDCLSYLTAAIK 364
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 85.8 bits (181), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = +2 / +2
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
G DVRGY WSL+D++EW+ G+T RFGLY+VD ++LKRY + S WFK +L +
Sbjct: 578 GSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFKRILQT 739
Score = 66.6 bits (139), Expect(2) = 2e-030
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +2 / +2
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+L+NY K RYN+PTVYITE G D ++ TS+ A+ D R+KYH +L+++ +I+
Sbjct: 404 ELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIR 574
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 85.8 bits (181), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = +2 / +1
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
G DVRGY WSL+D++EW+ G+T RFGLY+VD ++LKRY + S WFK +L +
Sbjct: 568 GSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFKRILQT 729
Score = 66.6 bits (139), Expect(2) = 2e-030
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +2 / +1
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+L+NY K RYN+PTVYITE G D ++ TS+ A+ D R+KYH +L+++ +I+
Sbjct: 394 ELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIR 564
>gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 3', mRNA sequence
Length = 837
Score = 106 bits (227), Expect(2) = 8e-030
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +2 / +2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRGYFAWSL+DN+EW GYT RFGL FVDYKD+LKRYPK+S WF + L
Sbjct: 110 EGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSFL 268
Score = 43.7 bits (89), Expect(2) = 8e-030
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 71 MDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
MDD +S T + AL D+KR+ Y GYL +A +I+E
Sbjct: 2 MDDEDSEITLLDQALNDTKRVNYFKGYLKALAEAIRE 112
>gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_C03_A029 3', mRNA sequence
Length = 548
Score = 90.9 bits (192), Expect(3) = 2e-029
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +2 / +2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRGY W+LLDN+EW GY RFGL +VDY+ NLKRY K S WFK LL
Sbjct: 290 EGADVRGYIVWALLDNFEWFNGYNVRFGLNYVDYRHNLKRYAKASAYWFKHLL 448
Score = 50.1 bits (103), Expect(3) = 2e-029
Identities = 19/44 (43%), Positives = 32/44 (72%)
Frame = +2 / +2
Query: 50 VYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
+YITE G D ++ T ++ +L+DSKR+KYH +L+N+ +I+E
Sbjct: 161 IYITETGYADFDNGTTPLKKSLQDSKRVKYHYQHLSNLLKAIRE 292
Score = 25.8 bits (50), Expect(3) = 2e-029
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSP 46
R ++NY K RYN+P
Sbjct: 115 RDVINYTKHRYNNP 156
>gb|DR088584.1|DR088584 RTAL1_3_A08.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_A08_A029 3', mRNA sequence
Length = 512
Score = 101 bits (216), Expect(2) = 2e-028
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 120 KEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHIL 281
Score = 44.1 bits (90), Expect(2) = 2e-028
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2 / +3
Query: 59 TENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
TE G D ++ T +Q AL DS R+KYH+ +L+++ SIKE
Sbjct: 3 TETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQSIKE 125
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 101 bits (215), Expect(2) = 4e-028
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRG+FAWSL+DN+EW GYTSRFG ++DYKD LKRYPK S W+K L
Sbjct: 553 EGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRFL 711
Score = 43.7 bits (89), Expect(2) = 4e-028
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
R L+ Y+K+RYN+P ++ITENG++D
Sbjct: 373 RDLLIYIKQRYNNPPIFITENGVND 447
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 101 bits (215), Expect(2) = 4e-028
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +2 / +3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G DVRG+FAWSL+DN+EW GYTSRFG ++DYKD LKRYPK S W+K L
Sbjct: 288 EGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRFL 446
Score = 43.7 bits (89), Expect(2) = 4e-028
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
R L+ Y+K+RYN+P ++ITENG++D
Sbjct: 108 RDLLIYIKQRYNNPPIFITENGVND 182
>gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 3', mRNA
sequence
Length = 631
Score = 102 bits (218), Expect(2) = 4e-028
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ LL S
Sbjct: 124 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLKS 288
Score = 42.3 bits (86), Expect(2) = 4e-028
Identities = 16/42 (38%), Positives = 30/42 (71%)
Frame = +2 / +1
Query: 56 ITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
ITE G D ++ T +++AL DS+R++YH+ +L+ + +I+E
Sbjct: 1 ITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 126
>gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST24C01, mRNA sequence
Length = 567
Score = 68.9 bits (144), Expect(3) = 4e-028
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
++G DVRGYF WSLLDN+EWA GYT RFGLY V +
Sbjct: 351 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVGF 455
Score = 61.1 bits (127), Expect(3) = 4e-028
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +2 / +3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
+K++ YVKE Y++PT+ ITENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 180 QKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLNAAIK 353
Score = 32.7 bits (65), Expect(3) = 4e-028
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2 / +1
Query: 278 DYKDNLKRYPKNSVQWFKTLL 340
D+ + KRYPK S QWFK L
Sbjct: 451 DFISDQKRYPKLSAQWFKQFL 513
>gb|CF478150.1|CF478150 RTWW3_19_D01.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_D01_A022 3', mRNA sequence
Length = 473
Score = 102 bits (217), Expect(2) = 3e-025
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2 / +1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGY WSL+D++EW++GY RFGLY VDYKDNLKRYP++S WFK +L
Sbjct: 91 KEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKQIL 252
Score = 33.1 bits (66), Expect(2) = 3e-025
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2 / +1
Query: 95 TSIQDALKDSKRIKYHNGYLNNVAASIKE 181
T +Q AL D R+KYH+ +L+++ IKE
Sbjct: 10 TPLQRALNDFGRLKYHSEHLSHLLQGIKE 96
>gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 3', mRNA sequence
Length = 612
Score = 96.4 bits (204), Expect(2) = 9e-025
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G DVRGYF WSLLDN+EWA GYT RFGLY VD+ + KRYPK S QWF+ L
Sbjct: 119 KNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFL 280
Score = 37.3 bits (75), Expect(2) = 9e-025
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2 / +2
Query: 59 TENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIK 178
TENG + +++Q+ L D +RI++H L+ + A+IK
Sbjct: 2 TENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLTAAIK 121
>gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 3', mRNA
sequence
Length = 587
Score = 94.1 bits (199), Expect(2) = 9e-025
Identities = 31/53 (58%), Positives = 42/53 (79%)
Frame = +2 / +2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G D+RG++AWSL+DN+EW+ GY FG +++DYKD LKRYPK S W+K LL
Sbjct: 347 EGSDIRGFYAWSLMDNFEWSLGYEC*FGFHYIDYKDGLKRYPKASAHWYKKLL 505
Score = 39.6 bits (80), Expect(2) = 9e-025
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
+ L+ Y+K +YN+P ++ITENG++D
Sbjct: 167 KDLLIYIKHQYNNPPIFITENGVND 241
>gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clone RS67H05, mRNA sequence
Length = 585
Score = 67.0 bits (140), Expect(2) = 2e-023
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +2 / +1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
R ++NY K RYN+P +YITE G D ++ T ++ AL DS R+KYH+ +L+++ IK+
Sbjct: 316 RGVINYTKHRYNNPPIYITETGYADFDNGTTLLERALNDSGRMKYHSEHLSHLLQGIKD 492
Score = 62.0 bits (129), Expect(2) = 2e-023
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2 / +1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFV 277
+DG DVRGY WSL+D++EW++GY RFGLY V
Sbjct: 487 KDGADVRGYIIWSLMDSFEWSSGYNYRFGLYHV 585
>gb|DR118221.1|DR118221 RTMG1_11_H09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_H09_A029 5', mRNA sequence
Length = 493
Score = 103 bits (219), Expect = 2e-021
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +2 / -1
Query: 191 DVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
DVRGYFAWSL+DN+EW GYT RFGL FVDYKD+LKRYPK+S WF + L
Sbjct: 490 DVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSFL 341
>gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_B01_A022 3', mRNA
sequence
Length = 529
Score = 102 bits (218), Expect = 2e-021
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ LL S
Sbjct: 76 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLKS 240
>gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 3', mRNA
sequence
Length = 615
Score = 102 bits (218), Expect = 2e-021
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLSS 346
+G DVRGY WSLLDN+EWA+GY RFGLY++DY DNLKRY + S WF+ LL S
Sbjct: 121 EGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLKS 285
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 68.9 bits (144), Expect(3) = 3e-021
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
DG +V GYFAWSLLDN+EW +GYTSRFG+ +VD+
Sbjct: 718 DGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDF 819
Score = 40.9 bits (83), Expect(3) = 3e-021
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2 / +1
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + YVKE Y +PT+ ++ENGMDD
Sbjct: 553 KAVTYVKEHYGNPTMILSENGMDD 624
Score = 29.5 bits (58), Expect(3) = 3e-021
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 293 LKRYPKNSVQWFKTLL 340
LKRYPK S WF LL
Sbjct: 826 LKRYPKMSAYWFSKLL 873
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 286,276,966
Number of Sequences: 355925
Number of extensions: 3197154
Number of successful extensions: 25825
Number of sequences better than 1.0e-020: 76
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10298270195
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)