TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419390.2.1
         (1603 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR012558.1|DR012558  HEAT1_13_D05.g1_A029 Root at 37 C fo...   181   2e-079
gb|BF610280.1|BF610280  NXSI_057_D01_F NXSI (Nsf Xylem Side ...    78   6e-029

>gb|DR012558.1|DR012558 HEAT1_13_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_13_D05_A029 5', mRNA sequence
          Length = 691

 Score =  181 bits (389), Expect(3) = 2e-079
 Identities = 67/105 (63%), Positives = 86/105 (81%)
 Frame = -1 / +3

                                                                       
Query: 961 DPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNDSECS 782
           +P++G+ KP +F++   IS IKPDQ MWYRAC TCN+KVTE  GSGYWCEGCQK+++ECS
Sbjct: 333 EPSVGEGKPAYFNVRVYISFIKPDQPMWYRACKTCNRKVTEEIGSGYWCEGCQKHETECS 512

                                                        
Query: 781 LRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGD 647
           LRYIMV+K SD +GEAW+SVFN+ AE+I+  +ADEL  IR E+ D
Sbjct: 513 LRYIMVVKASDSSGEAWLSVFNDQAEQILRHTADELAAIRSEDAD 647




 Score =  129 bits (277), Expect(3) = 2e-079
 Identities = 50/80 (62%), Positives = 66/80 (82%)
 Frame = -1 / +3

                                                                        
Query: 1276 VTISLWNDLATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAK 1097
            V +SLWNDLA   GQELLD VD+ P++A+++ KVSD+ GVSLST GRSTL INPDLP A+
Sbjct: 18   VVVSLWNDLAKKEGQELLDNVDNGPIIAVRAAKVSDYSGVSLSTTGRSTLMINPDLPVAQ 197

                                
Query: 1096 NLKSWYDSEGKDTSLAPISA 1037
             L+SWYD+ GK +S+AP+++
Sbjct: 198  KLRSWYDTYGKGSSMAPVAS 257




 Score =  104 bits (221), Expect(2) = 1e-038
 Identities = 50/90 (55%), Positives = 63/90 (70%)
 Frame = +3 / -1

                                                                       
Query: 699 IFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHPSHQYPDPKASVTFLLQVVQARY 878
           I SA SL T++QASP+ S++L T++YL  HS S F  PSHQ P+P +SVTF LQV+QARY
Sbjct: 595 ICSAWSLKTESQASPLESDALTTIIYLRLHSVSCF*QPSHQ*PEPISSVTFRLQVLQARY 416

                                         
Query: 879 HIF*SGLMWLMMAYRLKKTGFSWPIAGSLV 968
           HI *SGL+ L+    LK  GF  P  GS +
Sbjct: 415 HIG*SGLIKLIYTLTLK*AGFPSPTEGSTI 326




 Score = 77.1 bits (162), Expect(2) = 1e-038
 Identities = 38/77 (49%), Positives = 47/77 (61%)
 Frame = +3 / -1

                                                                        
Query: 1047 GASEVSLPSESYQDLRFLASGKSGLISRVLLPIVERDTPWKSDTFRLFIATTGELSTMSK 1226
            GA +   P  SYQ+  F A+G+SG I RVLLP+V++DTP  S T     A  G LST+S 
Sbjct: 247  GAIDEPFPYVSYQERSF*ATGRSGFIIRVLLPVVDKDTPE*SLTLAALTAIIGPLSTLSS 68

                             
Query: 1227 SSWPVVVARSFQREIVT 1277
            +S P   ARSFQR   T
Sbjct: 67   NSCPSFFARSFQRLTTT 17




 Score = 25.8 bits (50), Expect(3) = 2e-079
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1 / +3

                               
Query: 1024 TRAGGFKSMYSDRVFLSHI 968
            T   G +S+YS+R FLS I
Sbjct: 273  TPRAGSRSLYSERAFLSQI 329



>gb|BF610280.1|BF610280 NXSI_057_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
            clone NXSI_057_D01 5' similar to Arabidopsis thaliana
            sequence At5g08020 replication factor A - like protein
            see http://mips.gsf.de/proj/thal/db/index.html, mRNA
            sequence
          Length = 351

 Score = 78.0 bits (164), Expect(3) = 6e-029
 Identities = 29/55 (52%), Positives = 43/55 (78%)
 Frame = -1 / -1

                                                                   
Query: 1201 VVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISA 1037
            ++A+++  VS   GVSL T GRSTL INP LP A+ L+SWYD++GK +S+AP+++
Sbjct: 351  IIAVRAAXVSXXSGVSLXTTGRSTLMINPXLPVAQKLRSWYDTDGKGSSMAPVAS 187




 Score = 62.9 bits (131), Expect(3) = 6e-029
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -1 / -1

                                                
Query: 961 DPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTTCNK 851
           +P++G+ KP +F++   IS IKPDQ MWYRAC TCN+
Sbjct: 111 EPSVGEGKPAYFNVRVYISFIKPDQPMWYRACKTCNR 1




 Score = 25.8 bits (50), Expect(3) = 6e-029
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1 / -1

                               
Query: 1024 TRAGGFKSMYSDRVFLSHI 968
            T   G +S+YS+R FLS I
Sbjct: 171  TPRAGSRSLYSERAFLSQI 115



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 835,463,553
Number of Sequences: 355925
Number of extensions: 12582465
Number of successful extensions: 54554
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 25485575805
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)