TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control ... 216 5e-092
gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo li... 205 2e-064
gb|CV035619.1|CV035619 RTNACL1_41_F09.b1_A029 Roots plus ad... 142 9e-060
gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed... 160 2e-059
gb|DR682439.1|DR682439 EST1072514 Normalized pine embryo li... 142 3e-058
gb|DR166062.1|DR166062 RTPHOS1_9_D01.b2_A029 Roots minus ph... 143 5e-057
gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered lob... 146 7e-055
gb|CF390516.1|CF390516 RTDR2_19_H11.g1_A021 Loblolly pine r... 142 2e-054
gb|CF387240.1|CF387240 RTDR1_11_H05.g1_A015 Loblolly pine r... 142 9e-054
gb|DR018091.1|DR018091 STRS1_20_A05.g1_A034 Shoot tip pitch... 115 5e-052
gb|CO162750.1|CO162750 FLD1_37_F12.b1_A029 Root flooded Pin... 124 9e-051
gb|CO162154.1|CO162154 FLD1_33_B07.g1_A029 Root flooded Pin... 121 9e-051
gb|AL750699.1|AL750699 AL750699 RN Pinus pinaster cDNA clon... 121 9e-051
gb|CO163524.1|CO163524 FLD1_42_E02.b1_A029 Root flooded Pin... 124 1e-050
gb|DR052326.1|DR052326 RTCA1_3_H07.g1_A029 Roots minus calc... 120 2e-049
gb|AA739854.1|AA739854 619 PtIFG2 Pinus taeda cDNA clone 90... 105 5e-046
gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control ... 85 1e-045
gb|CF399370.1|CF399370 RTDS3_28_G12.b1_A022 Drought-stresse... 142 5e-045
gb|CF663657.1|CF663657 RTCNT1_4_G11.b1_A029 Root control Pi... 142 3e-044
gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo li... 140 1e-043
gb|CO162833.1|CO162833 FLD1_37_F12.g1_A029 Root flooded Pin... 124 2e-042
gb|DR167388.1|DR167388 RTPHOS1_18_B05.g1_A029 Roots minus p... 102 2e-042
gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered lob... 89 4e-042
gb|CO158046.1|CO158046 FLD1_4_D04.b1_A029 Root flooded Pinu... 93 2e-041
gb|CO200907.1|CO200907 RTCNT2_2_H02.b1_A029 Root control 2 ... 111 2e-040
gb|AL751019.1|AL751019 AL751019 RS Pinus pinaster cDNA clon... 142 8e-040
gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C fo... 85 7e-038
gb|DR058914.1|DR058914 RTNIT1_14_D07.g1_A029 Roots minus ni... 111 4e-036
gb|BG318079.1|BG318079 NXPV_010_C04_F NXPV (Nsf Xylem Plani... 133 2e-035
gb|BG318838.1|BG318838 NXPV_020_E07_F NXPV (Nsf Xylem Plani... 131 4e-035
gb|DR022259.1|DR022259 STRS1_49_H04.g1_A034 Shoot tip pitch... 79 7e-035
gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control P... 97 7e-035
gb|BQ695881.1|BQ695881 NXPV_033_G02_F NXPV (Nsf Xylem Plani... 133 9e-035
gb|DR057719.1|DR057719 RTNIT1_7_A04.g1_A029 Roots minus nit... 105 5e-034
gb|CO166204.1|CO166204 FLD1_60_D04.b1_A029 Root flooded Pin... 105 5e-034
gb|DR015665.1|DR015665 STRS1_4_H05.g1_A034 Shoot tip pitch ... 105 5e-034
gb|CF672272.1|CF672272 RTCNT1_62_B04.g1_A029 Root control P... 105 5e-034
gb|CO173994.1|CO173994 NDL1_41_B04.b1_A029 Needles control ... 105 5e-034
gb|DT633037.1|DT633037 EST1147968 Normalized pine embryo li... 94 6e-034
gb|DR685649.1|DR685649 EST1075726 Normalized pine embryo li... 94 6e-034
gb|DN626613.1|DN626613 EST977429 Subtracted pine embryo lib... 105 1e-033
gb|DR023326.1|DR023326 STRS1_56_G11.g1_A034 Shoot tip pitch... 105 2e-033
gb|CO170358.1|CO170358 NDL1_13_C10.g1_A029 Needles control ... 105 2e-033
gb|CF473795.1|CF473795 RTWW2_4_A12.g1_A021 Well-watered lob... 105 2e-033
gb|DN614642.1|DN614642 EST967692 Subtracted pine embryo lib... 103 3e-033
gb|DT634813.1|DT634813 EST1149744 Normalized pine embryo li... 96 6e-033
gb|CO362049.1|CO362049 NDL2_8_G08.g1_A029 Needles control 2... 105 6e-033
gb|DN630131.1|DN630131 EST980947 Subtracted pine embryo lib... 105 2e-032
gb|DN633647.1|DN633647 EST984463 Subtracted pine embryo lib... 105 1e-031
gb|CO361978.1|CO361978 NDL2_8_G08.b1_A029 Needles control 2... 105 1e-031
gb|BE643751.1|BE643751 NXCI_044_F11_F NXCI (Nsf Xylem Compr... 89 2e-031
gb|DR096317.1|DR096317 STRR1_27_E12.b1_A033 Stem Response R... 54 4e-031
gb|DT638034.1|DT638034 EST1152965 Normalized pine embryo li... 78 6e-031
gb|CO197549.1|CO197549 GEO1_7_G02.b1_A029 Root gravitropism... 121 6e-031
gb|DR693135.1|DR693135 EST1083223 Normalized pine embryo li... 78 8e-031
gb|CX714177.1|CX714177 RTPQ1_18_F08.g1_A032 Roots treated w... 108 2e-030
gb|CV134947.1|CV134947 EST846156 Sequencing ESTs from loblo... 133 2e-030
gb|DT625881.1|DT625881 EST1157805 Sequencing ESTs from lobl... 133 2e-030
gb|DN609158.1|DN609158 EST962208 Subtracted pine embryo lib... 119 3e-030
gb|DT627615.1|DT627615 EST1156364 Subtracted pine embryo li... 119 3e-030
gb|CF394929.1|CF394929 RTDS2_8_E03.g1_A021 Drought-stressed... 93 3e-030
gb|BQ107116.1|BQ107116 NXLV087_B07_F NXLV (Nsf Xylem Late w... 64 1e-028
gb|DR165517.1|DR165517 RTPHOS1_5_C09.g1_A029 Roots minus ph... 79 4e-028
gb|DR013680.1|DR013680 HEAT1_20_G06.g1_A029 Root at 37 C fo... 124 1e-027
gb|DR742962.1|DR742962 RTCU1_8_D04.g2_A029 Roots plus added... 116 1e-027
gb|BF777929.1|BF777929 NXSI_079_A03_F NXSI (Nsf Xylem Side ... 114 3e-027
gb|AW981526.1|AW981526 PC13F05 Pine TriplEx pollen cone lib... 121 9e-027
gb|DR112539.1|DR112539 RTS1_28_H12.g1_A029 Roots minus sulf... 72 3e-026
gb|BQ697789.1|BQ697789 NXPV_052_H02_F NXPV (Nsf Xylem Plani... 119 3e-026
gb|DR744656.1|DR744656 RTCU1_24_A09.b1_A029 Roots plus adde... 92 5e-026
gb|BX678339.1|BX678339 BX678339 RN Pinus pinaster cDNA clon... 80 6e-026
gb|DR070299.1|DR070299 RTDK1_12_A11.g1_A029 Roots, dark Pin... 99 2e-025
gb|CV032591.1|CV032591 RTNACL1_17_D12.b1_A029 Roots plus ad... 99 2e-025
gb|DR685280.1|DR685280 EST1075357 Normalized pine embryo li... 99 2e-025
gb|DR160324.1|DR160324 RTFE1_5_G11.b1_A029 Roots minus iron... 88 2e-025
gb|CF474613.1|CF474613 RTWW2_9_E07.g1_A021 Well-watered lob... 105 2e-025
gb|CF398179.1|CF398179 RTDS3_21_C06.g1_A022 Drought-stresse... 105 3e-025
gb|DR690061.1|DR690061 EST1080150 Normalized pine embryo li... 116 3e-025
gb|DT629085.1|DT629085 EST1155655 Subtracted pine embryo li... 99 3e-025
gb|DN628190.1|DN628190 EST979006 Subtracted pine embryo lib... 104 9e-025
gb|CX651075.1|CX651075 COLD1_50_A09.b1_A029 Root cold Pinus... 73 2e-024
gb|CO175574.1|CO175574 NDL1_55_D06.g1_A029 Needles control ... 112 5e-024
gb|CO165706.1|CO165706 FLD1_56_A09.g1_A029 Root flooded Pin... 111 7e-024
gb|DR072264.1|DR072264 RTDK1_25_D03.b1_A029 Roots, dark Pin... 111 7e-024
gb|DR058220.1|DR058220 RTNIT1_10_B07.g1_A029 Roots minus ni... 79 1e-023
gb|DR743965.1|DR743965 RTCU1_19_G08.b1_A029 Roots plus adde... 86 1e-023
gb|BM133803.1|BM133803 NXLV_012_D12_F NXLV (Nsf Xylem Late ... 99 1e-023
gb|AF220199.1|AF220199 Pinus taeda 26S proteasome regulator... 106 2e-023
gb|CX650276.1|CX650276 COLD1_44_D04.g1_A029 Root cold Pinus... 106 2e-023
gb|DR690485.1|DR690485 EST1080571 Normalized pine embryo li... 106 2e-023
gb|DR690763.1|DR690763 EST1080849 Normalized pine embryo li... 106 2e-023
gb|CF394820.1|CF394820 RTDS2_7_F06.g1_A021 Drought-stressed... 106 2e-023
gb|CX645309.1|CX645309 COLD1_1_H01.g1_A029 Root cold Pinus ... 106 2e-023
gb|BF777732.1|BF777732 NXSI_074_G11_F NXSI (Nsf Xylem Side ... 105 4e-023
gb|BX677806.1|BX677806 BX677806 RN Pinus pinaster cDNA clon... 68 5e-023
gb|DT636091.1|DT636091 EST1151022 Normalized pine embryo li... 109 5e-023
gb|CF399444.1|CF399444 RTDS3_28_G12.g1_A022 Drought-stresse... 94 5e-023
gb|CO165305.1|CO165305 FLD1_53_E06.g1_A029 Root flooded Pin... 79 6e-023
gb|DR048684.1|DR048684 RTBOR1_10_B09.g1_A029 Roots plus add... 105 7e-023
gb|DR177810.1|DR177810 RTMNUT1_7_C01.g1_A029 Roots minus mi... 105 7e-023
gb|BX682811.1|BX682811 BX682811 Pinus pinaster differenciat... 105 7e-023
gb|CF392220.1|CF392220 RTDR3_8_H06.g1_A022 Loblolly pine ro... 105 7e-023
gb|BX254966.1|BX254966 BX254966 Pinus pinaster differenciat... 72 1e-022
gb|CO363588.1|CO363588 RTK1_10_D08.g1_A029 Roots minus pota... 106 2e-022
gb|CO366387.1|CO366387 RTK1_27_C06.g1_A029 Roots minus pota... 106 2e-022
gb|DR385413.1|DR385413 RTHG1_8_B09.g1_A029 Roots plus added... 87 3e-022
gb|CX645310.1|CX645310 COLD1_1_H02.g1_A029 Root cold Pinus ... 102 3e-022
gb|DR745486.1|DR745486 RTCU1_29_H10.g1_A029 Roots plus adde... 106 3e-022
gb|DR052036.1|DR052036 RTCA1_2_B06.b1_A029 Roots minus calc... 100 4e-022
gb|DN465363.1|DN465363 EST961162 Sequencing ESTs from loblo... 100 4e-022
gb|DR092371.1|DR092371 STRR1_1_A12.b1_A033 Stem Response Re... 100 4e-022
gb|DR015815.1|DR015815 STRS1_5_G03.g1_A034 Shoot tip pitch ... 100 4e-022
gb|CO164041.1|CO164041 FLD1_45_A06.g1_A029 Root flooded Pin... 100 4e-022
gb|CX652505.1|CX652505 COLD1_59_B11.g1_A029 Root cold Pinus... 100 4e-022
gb|DR092451.1|DR092451 STRR1_1_A12.g1_A033 Stem Response Re... 100 4e-022
gb|CO170275.1|CO170275 NDL1_12_H04.g1_A029 Needles control ... 100 4e-022
gb|DR047454.1|DR047454 RTBOR1_1_D11.b1_A029 Roots plus adde... 100 4e-022
gb|DR385900.1|DR385900 RTHG1_11_C01.g1_A029 Roots plus adde... 101 4e-022
gb|CO198873.1|CO198873 GEO1_17_E06.b1_A029 Root gravitropis... 100 4e-022
gb|DR168297.1|DR168297 RTPHOS1_24_C02.g1_A029 Roots minus p... 100 4e-022
gb|CO171668.1|CO171668 NDL1_23_D04.g1_A029 Needles control ... 100 4e-022
gb|AI813002.1|AI813002 2F11 Pine Lambda Zap Xylem library P... 102 4e-022
gb|AW784094.1|AW784094 NXNV_117_G01_F Nsf Xylem Normal wood... 105 4e-022
gb|CF398817.1|CF398817 RTDS3_16_H03.g1_A022 Drought-stresse... 105 4e-022
gb|DR059108.1|DR059108 RTNIT1_15_F01.g1_A029 Roots minus ni... 105 4e-022
gb|DR746295.1|DR746295 RTCU1_36_B08.b1_A029 Roots plus adde... 105 4e-022
gb|BQ702237.1|BQ702237 NXSI_126_D12_F NXSI (Nsf Xylem Side ... 100 6e-022
gb|CO159911.1|CO159911 FLD1_16_G11.g1_A029 Root flooded Pin... 77 8e-022
gb|BQ701801.1|BQ701801 NXSI_120_G01_F NXSI (Nsf Xylem Side ... 77 9e-022
gb|DR687941.1|DR687941 EST1078024 Normalized pine embryo li... 104 1e-021
gb|AW010479.1|AW010479 ST07C07 Pine TriplEx shoot tip libra... 100 2e-021
gb|DT625689.1|DT625689 EST1157613 Sequencing ESTs from lobl... 100 2e-021
gb|CO160697.1|CO160697 FLD1_23_A04.g1_A029 Root flooded Pin... 100 2e-021
gb|BQ701170.1|BQ701170 NXSI_023_D05_F NXSI (Nsf Xylem Side ... 100 4e-021
gb|CR393041.1|CR393041 CR393041 RN Pinus pinaster cDNA clon... 100 4e-021
gb|BG319239.1|BG319239 NXPV_019_E01_F NXPV (Nsf Xylem Plani... 102 4e-021
gb|BQ697169.1|BQ697169 NXPV_050_D01_F NXPV (Nsf Xylem Plani... 102 6e-021
gb|DT626481.1|DT626481 EST1158405 Sequencing ESTs from lobl... 101 8e-021
gb|CO200891.1|CO200891 RTCNT2_2_F08.b1_A029 Root control 2 ... 84 9e-021
>gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 5', mRNA sequence
Length = 548
Score = 216 bits (466), Expect(4) = 5e-092
Identities = 92/97 (94%), Positives = 93/97 (95%)
Frame = +3 / +2
Query: 12 FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 191
F GLLSPWKGILLFG PGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF
Sbjct: 2 FRGLLSPWKGILLFGFPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 181
Query: 192 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 302
E+ARHHAPSTIFLDEIDAIIS RGE RSEHEASRRLK
Sbjct: 182 EVARHHAPSTIFLDEIDAIISHRGEGRSEHEASRRLK 292
Score = 176 bits (379), Expect(3) = 8e-061
Identities = 77/99 (77%), Positives = 85/99 (85%)
Frame = -1 / -3
Query: 307 SVFKRRLASCSLRASPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAE 128
S FKR LASCSLR SPR L+IASISSR IVDGA*CLA+S T TSFSESPRHLLT+DDA+
Sbjct: 297 SFFKRLLASCSLRPSPR*LIIASISSRKIVDGA*CLATSKSTFTSFSESPRHLLTMDDAD 118
Query: 127 MLKKVVLHSVATAFASIVFPVPGGPKSKMPFHGERRPVK 11
MLK VVLHSVATA ASIVFPVPG P ++PF G+RRP+K
Sbjct: 117 MLKNVVLHSVATALASIVFPVPGKPNRRIPFQGDRRPLK 1
Score = 105 bits (224), Expect(4) = 5e-092
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +3 / +3
Query: 345 DLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATT 491
DLVFVLAATNLPWELDAAMLRRLEKRILVPLPE EARQAMFE+LLP+ T
Sbjct: 339 DLVFVLAATNLPWELDAAMLRRLEKRILVPLPEREARQAMFEDLLPSQT 485
Score = 86.8 bits (183), Expect(4) = 3e-033
Identities = 45/94 (47%), Positives = 59/94 (62%)
Frame = -3 / -2
Query: 293 TTSLMLTASFTTLADDSIYFIKEYCGWCMMPSKLKQNFDKLL*ISTPFADN**C*NVEEG 114
+T +LTA+FTT+ ++SI FI + C WCMM LK+ F K *I+ P A+N *C VEE
Sbjct: 283 STCFVLTAAFTTVTNNSINFI*KDC*WCMMSCNLKKYFYKFF*ITAPLANNG*CRYVEEC 104
Query: 113 GFALSSDRFCQHCLSCSWGAKK*DAFPWRKETSE 12
FALSS +HCLS S K + FP R + S+
Sbjct: 103 CFALSSHCLGKHCLSSSRKTK*KNPFPRR*KASK 2
Score = 71.6 bits (150), Expect(3) = 8e-061
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = -1 / -2
Query: 502 SNFEVVAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVF 335
S+ V G+ SSN+A AS SG GTRIRFS RRSMAAS+S G+ VAA T T+S +F
Sbjct: 496 SSAPVCEGKRSSNMA*RASRSGRGTRIRFSRRRSMAASSSHGKLVAARTKTRSXLF 329
Score = 69.8 bits (146), Expect(4) = 2e-024
Identities = 32/63 (50%), Positives = 41/63 (65%)
Frame = +1 / +3
Query: 34 GKASYFLAPQEQERQCWQKRSLLSAKPPSSTFQHHQLSANGVEIQRSLSKFCLSLLGIMH 213
GK ++L E ERQC ++ LLSAK SST+ HH L A+G IQ++L K+ L L IMH
Sbjct: 24 GKGFFYLVFLELERQCLPRQWLLSAKQHSSTYLHHPLLASGAVIQKNL*KYFLRLQDIMH 203
Query: 214 HPQ 222
H Q
Sbjct: 204 HQQ 212
Score = 54.2 bits (112), Expect(4) = 3e-033
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = -3 / -1
Query: 467 KHRLPCFTFRKRYKNPLLKPAEHGCIQFPGKICSCKYKYQVVCLC 333
KH L CFT RKR+KN L K ++HG IQ P +I + K +V +C
Sbjct: 461 KHGLTCFTLRKRHKNTLFKTSKHGSIQLPRQISRRQDKNEVXFVC 327
Score = 43.7 bits (89), Expect(4) = 5e-092
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3 / +3
Query: 501 EIPYDILVEKTEGYSGSDI 557
E+PYD++VE+TEGYSGSDI
Sbjct: 492 ELPYDLMVERTEGYSGSDI 548
Score = 40.9 bits (83), Expect(4) = 2e-024
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1 / +1
Query: 334 QRQTTWYLYLQLQIFPGNWMQPCSAGLRSGFLYRFLKVKQGKRCLR 471
Q T +L + I G+WM PC L+S FL FL VK K CL+
Sbjct: 328 QTNXTSFLSWRRLICRGSWMLPCFDVLKSVFLCLFLSVKHVKPCLK 465
Score = 33.6 bits (67), Expect(4) = 3e-033
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = -1 / -2
Query: 556 ISEPE*PSVFSTSMSYGISNFEVVAGRSSS 467
ISEPE*PSV ST SYG S RSS+
Sbjct: 547 ISEPE*PSVLSTIRSYGSSAPVCEGKRSSN 458
Score = 31.8 bits (63), Expect(4) = 5e-092
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3 / +1
Query: 300 KTELLIQMDGLTKTNDLVFV 359
+TELLIQMDGL +TN F+
Sbjct: 292 ETELLIQMDGLMQTNXTSFL 351
Score = 30.4 bits (60), Expect(4) = 2e-024
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +2
Query: 509 VRHTS*KDRRLLWFRY 556
+R *KDRRL WFRY
Sbjct: 500 IRSYG*KDRRLFWFRY 547
Score = 26.7 bits (52), Expect(4) = 2e-024
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2 / +3
Query: 302 D*ATYSDGWFDKDK 343
+*ATY DGWF+ +K
Sbjct: 294 N*ATYPDGWFNANK 335
Score = 25.8 bits (50), Expect(3) = 8e-061
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1 / -1
Query: 355 NTKSFVFVKPSI*ISSSV 302
N FV +KPSI ISSSV
Sbjct: 347 NEVXFVCIKPSIWISSSV 294
Score = 23.5 bits (45), Expect(4) = 3e-033
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / -3
Query: 344 VCLCQTIHLNK*LS 303
+CL TIHL+K*LS
Sbjct: 336 ICLH*TIHLDK*LS 295
>gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC607 3' end, mRNA sequence
Length = 913
Score = 205 bits (442), Expect(3) = 2e-064
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = +3 / +2
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
PKYF GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK
Sbjct: 539 PKYFRGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 718
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGE 266
VLFE+ARHHAPSTIFLDEIDAIIS RGE
Sbjct: 719 VLFEVARHHAPSTIFLDEIDAIISHRGE 802
Score = 163 bits (350), Expect(3) = 3e-046
Identities = 69/88 (78%), Positives = 77/88 (87%)
Frame = -1 / -2
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR L+IASISSR IVDGA*CLA+S T TSFSESPRHLLT+DDA+MLK VVLHSVATA
Sbjct: 801 SPR*LIIASISSRKIVDGA*CLATSKSTFTSFSESPRHLLTMDDADMLKNVVLHSVATAL 622
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
ASIVFPVPGGP ++PF G+RRP+KY G
Sbjct: 621 ASIVFPVPGGPNRRIPFQGDRRPLKYLG 538
Score = 42.8 bits (87), Expect(3) = 2e-064
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / +3
Query: 264 EARSEHEASRRLKTELLIQM 323
+ RSEHEASRRLKTELLIQM
Sbjct: 801 KGRSEHEASRRLKTELLIQM 860
Score = 37.7 bits (76), Expect(3) = 2e-064
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 312 LIQMDGLTKTNDLVFVLAATN 374
L + DGL +TNDLVFVLAATN
Sbjct: 850 LSRWDGLMQTNDLVFVLAATN 912
Score = 34.1 bits (68), Expect(3) = 3e-046
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -1 / -1
Query: 316 ISSSVFKRRLASCSLR 269
ISSSVFKR LASCSLR
Sbjct: 853 ISSSVFKRLLASCSLR 806
Score = 27.6 bits (54), Expect(3) = 3e-046
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / -3
Query: 370 VAASTNTKSFVFVKPS 323
VAA T T+SFV +KPS
Sbjct: 908 VAARTKTRSFVCIKPS 861
>gb|CV035619.1|CV035619 RTNACL1_41_F09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_F09_A029 3', mRNA sequence
Length = 855
Score = 142 bits (304), Expect(3) = 9e-060
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / -3
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PWK LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV
Sbjct: 634 PQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVA 455
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 454 NLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 344
Score = 93.2 bits (197), Expect(3) = 9e-060
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +3 / -3
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTE+L+QM G+ +D V VLAATN P+ LD A+ RR +KRI +PLPE +A
Sbjct: 367 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 188
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T L
Sbjct: 187 RQHMFKVHLGDTPYNL 140
Score = 86.3 bits (182), Expect(3) = 2e-031
Identities = 46/88 (52%), Positives = 52/88 (59%)
Frame = -1 / +3
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS NI+ GA A N+ TSFS SP H T + E+LK V SVATAF
Sbjct: 372 SPRVPHKESISSMNIIAGAESRAI*NKFATSFSLSPIHFETRSEEEILKNVESASVATAF 551
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + F G R PVK +G
Sbjct: 552 AKYDFPVPGGPYKRKAFQGFRLPVKNWG 635
Score = 63.8 bits (133), Expect(3) = 2e-031
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = -1 / +3
Query: 487 VAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISS 308
V+ + + NI CLA SGSG I S+RR +A SN+ G VAA T T S +F P I +
Sbjct: 153 VSPKWTLNICCLALTSGSGM*ILLSNRRRIA*SNAYGVLVAARTRTLSSLFPTPCICTRT 332
Query: 307 SVFKRRLASCSL 272
SVF RR AS SL
Sbjct: 333 SVFIRREASLSL 368
Score = 35.0 bits (70), Expect(3) = 9e-060
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3 / -3
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVL 614
E ++ L +TEG+SGSD+ + K+ +P+R+ +
Sbjct: 136 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAM 23
Score = 24.4 bits (47), Expect(3) = 2e-031
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1 / +3
Query: 592 SGCMAASLHTRRISEPE*PSVFSTSMSYGIS 500
+G + SL S+PE PSV S S +S
Sbjct: 45 TGSKSTSLTQTATSDPEKPSVLHASSSKSLS 137
>gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_D11_A022 5', mRNA sequence
Length = 799
Score = 160 bits (345), Expect(2) = 2e-059
Identities = 59/97 (60%), Positives = 81/97 (83%)
Frame = +3 / +1
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P+YF G+ PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+
Sbjct: 190 PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVR 369
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF+LAR +APSTIF+DEID++ + RG + + R
Sbjct: 370 CLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRR 480
Score = 99.1 bits (210), Expect(2) = 9e-026
Identities = 50/88 (56%), Positives = 54/88 (61%)
Frame = -1 / -3
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
+PR L SISS +V GA* LA SN+ T S SPRH E LK VV HSVATA
Sbjct: 452 APRALQSESISSMKMVLGA*ALARSNKQRTMRSLSPRHFEAKVAEETLKNVVPHSVATAL 273
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A VFPVPGGP + PFHG R P KY G
Sbjct: 272 ARRVFPVPGGPNMRTPFHGRRIP*KYSG 189
Score = 89.5 bits (189), Expect(2) = 2e-059
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +3 / +1
Query: 348 LVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVE 527
+V VLAATN PW++D A+ RRLEKRI +PLP E+R+ + L ++ D +
Sbjct: 553 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPAFESRKELIRINLKGVEVAPDVDIDEVAR 732
Query: 528 KTEGYSGSDIRLVCKEAAM 584
+TEGYSG D+ VC++A+M
Sbjct: 733 RTEGYSGDDLTNVCRDASM 789
Score = 38.6 bits (78), Expect(2) = 9e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3 / -2
Query: 440 RKRYKNPLLKPAEHGCIQFPGKICSCKYKY 351
RKRY N LL P+ I P +ICSC++ Y
Sbjct: 645 RKRYINSLL*PSPESFIDIPWEICSCQHHY 556
>gb|DR682439.1|DR682439 EST1072514 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA985 3' end, mRNA sequence
Length = 744
Score = 142 bits (305), Expect(3) = 3e-058
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / +3
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 153 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 332
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR APS IF+DEID++ QRGE + R
Sbjct: 333 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 443
Score = 91.3 bits (193), Expect(3) = 3e-058
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTELL+QM G+ + V VLAATN P+ LD A+ RR +KRI +PLP+ +A
Sbjct: 420 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 599
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T + L
Sbjct: 600 RQHMFKVHLGDTPNNL 647
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 45/88 (51%), Positives = 51/88 (57%)
Frame = -1 / -3
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS N++DGA A NR TSFS SP H T + E+L V SVATAF
Sbjct: 415 SPRCPHKESISSINMIDGAQSRAI*NRLETSFSLSPIHFETRSEEEIL*NVESASVATAF 236
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + G R PVK +G
Sbjct: 235 AKYDFPVPGGPYKRKALQGFRFPVKNWG 152
Score = 58.8 bits (122), Expect(2) = 1e-026
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = -1 / -3
Query: 487 VAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISS 308
V+ R + NI CLA SG G IR S R +A S + G FVAA+T T +F P I S
Sbjct: 634 VSPR*TLNICCLAFRSGRGI*IRLSKRLLIAWSRA*GVFVAANTRTF*SLFPTPCICTKS 455
Query: 307 SVFKRRLASCSL 272
SVF RR AS SL
Sbjct: 454 SVFIRREASLSL 419
Score = 31.3 bits (62), Expect(3) = 3e-058
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPL 593
++ L +T+G+SGSDI + K+ +P+
Sbjct: 660 FEDLARRTDGFSGSDISVCVKDVLFEPV 743
>gb|DR166062.1|DR166062 RTPHOS1_9_D01.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_9_D01_A029 3', mRNA sequence
Length = 691
Score = 143 bits (307), Expect(3) = 5e-057
Identities = 56/101 (55%), Positives = 76/101 (75%)
Frame = +3 / -2
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 606 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 427
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 305
LF++AR APS IF+DEID++ QRGE ++ + +T
Sbjct: 426 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASTNKDRT 304
Score = 83.1 bits (175), Expect(3) = 5e-057
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = +3 / -3
Query: 291 RRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFE 470
RR+KTELL+QM G+ + V VLAATN P+ LD A+ RR +KRI +PLP+ +ARQ MF+
Sbjct: 323 RRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFK 144
Query: 471 ELLPATTSKL 500
L T + L
Sbjct: 143 VHLGDTPNNL 114
Score = 81.7 bits (172), Expect(2) = 6e-025
Identities = 45/88 (51%), Positives = 51/88 (57%)
Frame = -1 / +2
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS N++DGA A NR TSFS SP H T + E+L V SVATAF
Sbjct: 344 SPRCPHKESISSINMIDGAQSRAI*NRLETSFSLSPIHFETRSEEEIL*NVESASVATAF 523
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + G R PVK +G
Sbjct: 524 AKYDFPVPGGPYKRKALQGFRFPVKNWG 607
Score = 53.3 bits (110), Expect(2) = 6e-025
Identities = 32/66 (48%), Positives = 38/66 (57%)
Frame = -1 / +1
Query: 487 VAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISS 308
V+ R + NI CLA SG G IR S R +A S + G FVAA+T T +F P I S
Sbjct: 127 VSPR*TLNICCLAFRSGRGI*IRLSKRLLIAWSRA*GVFVAANTRTF*SLFPTPCICTKS 306
Query: 307 SVFKRR 290
SVF RR
Sbjct: 307 SVFIRR 324
Score = 34.5 bits (69), Expect(3) = 5e-057
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3 / -3
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLRR 599
++ L +T+G+SGSDI + K+ +P+R+
Sbjct: 101 FEDLARRTDGFSGSDISVCVKDVLFEPVRK 12
>gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 3', mRNA sequence
Length = 656
Score = 146 bits (314), Expect(2) = 7e-055
Identities = 56/92 (60%), Positives = 74/92 (80%)
Frame = +3 / -2
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P+ FTG +PW+GILL+GPPGTGK+ LAKAVATE K TFF++S+S +VSKW+GDSE+LV+
Sbjct: 493 PQMFTGKRTPWRGILLYGPPGTGKSFLAKAVATEAKGTFFSVSSSDLVSKWQGDSERLVR 314
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSE 278
LFE+AR P+ IF+DE+D++ R E SE
Sbjct: 313 QLFEMARESKPAIIFIDEVDSLAGTRNEGESE 218
Score = 88.6 bits (187), Expect(2) = 7e-055
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = +3 / -2
Query: 276 EHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEAR 455
E E SRR+KTE L+QM+G+ + V VL ATN+PW LD A+ RR EKRI +PLP EAR
Sbjct: 226 ESEGSRRIKTEFLVQMNGVGHDDTGVLVLGATNIPWALDNAIKRRFEKRIYIPLPGLEAR 47
Query: 456 QAMFE 470
+ MFE
Sbjct: 46 KRMFE 32
Score = 84.9 bits (179), Expect(2) = 4e-024
Identities = 44/80 (55%), Positives = 48/80 (60%)
Frame = -1 / +3
Query: 241 SISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAFASIVFPVP 62
S SS ++ G LA S TS SESP HLLT D LKKV SVATAFA FPVP
Sbjct: 255 STSSIKMIAGLLSLAISKSCRTSRSESPCHLLTRSDELTLKKVPFASVATAFARKDFPVP 434
Query: 61 GGPKSKMPFHGERRPVKYFG 2
GGP +K+P HG R PV G
Sbjct: 435 GGPYNKIPLHGVRFPVNICG 494
Score = 47.3 bits (97), Expect(2) = 4e-024
Identities = 29/60 (48%), Positives = 34/60 (56%)
Frame = -1 / +3
Query: 472 SSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISSSVFKR 293
SSNI AS GSG IRFS+ R +A S + G FVA ST+T P I* +SV R
Sbjct: 30 SSNIRFRASRPGSGI*IRFSNLRLIALSKAHGIFVAPSTSTPVSS*PTPFI*TRNSVLMR 209
>gb|CF390516.1|CF390516 RTDR2_19_H11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_H11_A021 5', mRNA
sequence
Length = 731
Score = 142 bits (305), Expect(2) = 2e-054
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / +2
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 233 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 412
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR APS IF+DEID++ QRGE + R
Sbjct: 413 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 523
Score = 91.3 bits (193), Expect(2) = 2e-054
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +2
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTELL+QM G+ + V VLAATN P+ LD A+ RR +KRI +PLP+ +A
Sbjct: 500 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 679
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T + L
Sbjct: 680 RQHMFKVHLGDTPNNL 727
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 45/88 (51%), Positives = 51/88 (57%)
Frame = -1 / -3
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS N++DGA A NR TSFS SP H T + E+L V SVATAF
Sbjct: 495 SPRCPHKESISSINMIDGAQSRAI*NRLETSFSLSPIHFETRSEEEIL*NVESASVATAF 316
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + G R PVK +G
Sbjct: 315 AKYDFPVPGGPYKRKALQGFRFPVKNWG 232
Score = 58.8 bits (122), Expect(2) = 1e-026
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = -1 / -3
Query: 487 VAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISS 308
V+ R + NI CLA SG G IR S R +A S + G FVAA+T T +F P I S
Sbjct: 714 VSPR*TLNICCLAFRSGRGI*IRLSKRLLIAWSRA*GVFVAANTRTF*SLFPTPCICTKS 535
Query: 307 SVFKRRLASCSL 272
SVF RR AS SL
Sbjct: 534 SVFIRREASLSL 499
>gb|CF387240.1|CF387240 RTDR1_11_H05.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_H05_A015 5', mRNA
sequence
Length = 687
Score = 142 bits (305), Expect(2) = 9e-054
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / +1
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 226 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 405
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR APS IF+DEID++ QRGE + R
Sbjct: 406 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 516
Score = 89.0 bits (188), Expect(2) = 9e-054
Identities = 38/65 (58%), Positives = 49/65 (75%)
Frame = +3 / +1
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTELL+QM G+ + V VLAATN P+ LD A+ RR +KRI +PLP+ +A
Sbjct: 493 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 672
Query: 453 RQAMF 467
RQ MF
Sbjct: 673 RQHMF 687
Score = 81.7 bits (172), Expect(2) = 4e-026
Identities = 45/88 (51%), Positives = 51/88 (57%)
Frame = -1 / -2
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS N++DGA A NR TSFS SP H T + E+L V SVATAF
Sbjct: 488 SPRCPHKESISSINMIDGAQSRAI*NRLETSFSLSPIHFETRSEEEIL*NVESASVATAF 309
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + G R PVK +G
Sbjct: 308 AKYDFPVPGGPYKRKALQGFRFPVKNWG 225
Score = 57.4 bits (119), Expect(2) = 4e-026
Identities = 34/65 (52%), Positives = 38/65 (58%)
Frame = -1 / -2
Query: 466 NIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISSSVFKRRL 287
NI CLA SG G IR S R +A S + G FVAA+T T +F P I SSVF RR
Sbjct: 686 NICCLAFRSGRGI*IRLSKRLLIAWSRA*GVFVAANTRTF*SLFPTPCICTKSSVFIRRE 507
Query: 286 ASCSL 272
AS SL
Sbjct: 506 ASLSL 492
>gb|DR018091.1|DR018091 STRS1_20_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_A05_A034 5', mRNA sequence
Length = 716
Score = 115 bits (246), Expect(3) = 5e-052
Identities = 47/80 (58%), Positives = 61/80 (76%)
Frame = +3 / +3
Query: 54 GPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLD 233
GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++AR AP+ IF+D
Sbjct: 3 GPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMARDSAPAIIFID 182
Query: 234 EIDAIISQRGEARSEHEASR 293
EID++ RGE+ + R
Sbjct: 183 EIDSLCGTRGESNESEASRR 242
Score = 93.6 bits (198), Expect(3) = 5e-052
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTE+L+QM G+ +D V VLAATN P+ LD A+ RR +KRI +PLPE +A
Sbjct: 219 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 398
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T L
Sbjct: 399 RQHMFKVHLGDTPHNL 446
Score = 72.1 bits (151), Expect(3) = 4e-027
Identities = 39/71 (54%), Positives = 43/71 (60%)
Frame = -1 / -2
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS NI+ GA A N+ TSFS SP H T + E+LK V SVATAF
Sbjct: 214 SPRVPHKESISSMNIIAGAESRAI*NKFATSFSLSPIHFETRSEEEILKNVESASVATAF 35
Query: 85 ASIVFPVPGGP 53
A FPVPGGP
Sbjct: 34 AKYDFPVPGGP 2
Score = 63.8 bits (133), Expect(3) = 4e-027
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = -1 / -2
Query: 487 VAGRSSSNIACLASPSGSGTRIRFSSRRSMAASNSQGRFVAASTNTKSFVFVKPSI*ISS 308
V+ + + NI CLA SGSG I S+RR +A SN+ G VAA T T S +F P I +
Sbjct: 433 VSPKWTLNICCLALTSGSGM*ILLSNRRRIA*SNAYGVLVAARTRTLSSLFPTPCICTRT 254
Query: 307 SVFKRRLASCSL 272
SVF RR AS SL
Sbjct: 253 SVFIRREASLSL 218
Score = 35.0 bits (70), Expect(3) = 5e-052
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3 / +3
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVL 614
E ++ L +TEG+SGSD+ + K+ +P+R+ +
Sbjct: 450 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAM 563
Score = 24.0 bits (46), Expect(3) = 4e-027
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1 / -2
Query: 592 SGCMAASLHTRRISEPE*PSVFSTSMSYGIS 500
+G + SL S+PE PSV S S +S
Sbjct: 541 TGSNSTSLTQTATSDPEKPSVLHASSSKSLS 449
>gb|CO162750.1|CO162750 FLD1_37_F12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F12_A029 3', mRNA sequence
Length = 797
Score = 124 bits (265), Expect(3) = 9e-051
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +2
Query: 18 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 197
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 167 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 346
Query: 198 ARHHAPSTIFLDEIDAIISQR 260
A +P+ IF+DE+D+++ QR
Sbjct: 347 AAKVSPTIIFIDEVDSMLGQR 409
Score = 87.2 bits (184), Expect(3) = 9e-051
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3 / +2
Query: 330 LTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIP 509
L+KT + V VLAATN P++LD A++RR ++RI+V LP E+R+ + LL +
Sbjct: 479 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 658
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLR 596
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 659 FKELATMTDGYTGSDLKNLCTAAAFRPVR 745
Score = 28.6 bits (56), Expect(3) = 9e-051
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 276 EHEASRRLKTELLIQMDGL 332
EHEA R++K E + DGL
Sbjct: 422 EHEAMRKIKNEFMAHWDGL 478
>gb|CO162154.1|CO162154 FLD1_33_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_B07_A029 5', mRNA sequence
Length = 799
Score = 121 bits (259), Expect(3) = 9e-051
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 21 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 200
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 25 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 204
Query: 201 RHHAPSTIFLDEIDAIISQR 260
+PS IF+DE+D+++ +R
Sbjct: 205 SKISPSVIFVDEVDSMLGRR 264
Score = 84.9 bits (179), Expect(3) = 9e-051
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +3 / +1
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
TK + V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 337 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 516
Query: 513 DILVEKTEGYSGSDIRLVCKEAAMQPLRRLM 605
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 517 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 609
Score = 33.6 bits (67), Expect(3) = 9e-051
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3 / +1
Query: 258 RGEARSEHEASRRLKTELLIQMDGL 332
R E+ EHEA R++K E ++ DGL
Sbjct: 259 RRESPGEHEAMRKMKNEFMVNWDGL 333
>gb|AL750699.1|AL750699 AL750699 RN Pinus pinaster cDNA clone RN06C12 similar to ATPASE,
mRNA sequence
Length = 674
Score = 121 bits (259), Expect(3) = 9e-051
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / -2
Query: 21 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 200
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 610 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 431
Query: 201 RHHAPSTIFLDEIDAIISQR 260
+PS IF+DE+D+++ +R
Sbjct: 430 SKISPSVIFVDEVDSMLGRR 371
Score = 84.9 bits (179), Expect(3) = 9e-051
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +3 / -2
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
TK + V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 298 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 119
Query: 513 DILVEKTEGYSGSDIRLVCKEAAMQPLRRLM 605
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 118 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 26
Score = 33.6 bits (67), Expect(3) = 9e-051
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3 / -2
Query: 258 RGEARSEHEASRRLKTELLIQMDGL 332
R E+ EHEA R++K E ++ DGL
Sbjct: 376 RRESPGEHEAMRKMKNEFMVNWDGL 302
>gb|CO163524.1|CO163524 FLD1_42_E02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_E02_A029 3', mRNA sequence
Length = 791
Score = 124 bits (265), Expect(3) = 1e-050
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +1
Query: 18 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 197
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 130 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 309
Query: 198 ARHHAPSTIFLDEIDAIISQR 260
A +P+ IF+DE+D+++ QR
Sbjct: 310 AAKVSPTIIFIDEVDSMLGQR 372
Score = 86.8 bits (183), Expect(3) = 1e-050
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3 / +1
Query: 330 LTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIP 509
L+KT + V VLAATN P++LD A++RR ++RI+V LP E+R+ + LL +
Sbjct: 442 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILATLLAKEKLEEGFD 621
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLR 596
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 622 FKELATMTDGYTGSDLKNLCTAAAFRPVR 708
Score = 28.6 bits (56), Expect(3) = 1e-050
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 276 EHEASRRLKTELLIQMDGL 332
EHEA R++K E + DGL
Sbjct: 385 EHEAMRKIKNEFMAHWDGL 441
>gb|DR052326.1|DR052326 RTCA1_3_H07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_H07_A029 5', mRNA sequence
Length = 858
Score = 120 bits (256), Expect(3) = 2e-049
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = +3 / +3
Query: 18 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 197
GLL P GILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 30 GLLKPC*GILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 209
Query: 198 ARHHAPSTIFLDEIDAIISQR 260
A +P+ IF+DE+D+++ QR
Sbjct: 210 AAKVSPTIIFIDEVDSMLGQR 272
Score = 87.2 bits (184), Expect(3) = 2e-049
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3 / +3
Query: 330 LTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIP 509
L+KT + V VLAATN P++LD A++RR ++RI+V LP E+R+ + LL +
Sbjct: 342 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 521
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLR 596
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 522 FKELATMTDGYTGSDLKNLCTAAAFRPVR 608
Score = 28.6 bits (56), Expect(3) = 2e-049
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 276 EHEASRRLKTELLIQMDGL 332
EHEA R++K E + DGL
Sbjct: 285 EHEAMRKIKNEFMAHWDGL 341
>gb|AA739854.1|AA739854 619 PtIFG2 Pinus taeda cDNA clone 9008M 3', mRNA sequence
Length = 681
Score = 105 bits (224), Expect(3) = 5e-046
Identities = 45/75 (60%), Positives = 55/75 (73%)
Frame = +3 / +3
Query: 36 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 215
+GILLF PPGTGKTM AKAVATE F NIS SSI SKW G+ EK VK +F LA +
Sbjct: 111 QGILLFVPPGTGKTMXAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISX 290
Query: 216 STIFLDEIDAIISQR 260
S IF+DE+D+++ +R
Sbjct: 291 SVIFVDEVDSMLGRR 335
Score = 84.9 bits (179), Expect(3) = 5e-046
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +3 / +3
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
TK + V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 408 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 587
Query: 513 DILVEKTEGYSGSDIRLVCKEAAMQPLRRLM 605
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 588 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 680
Score = 33.6 bits (67), Expect(3) = 5e-046
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3 / +3
Query: 258 RGEARSEHEASRRLKTELLIQMDGL 332
R E+ EHEA R++K E ++ DGL
Sbjct: 330 RRESPGEHEAMRKMKNEFMVNWDGL 404
>gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 3', mRNA sequence
Length = 767
Score = 84.9 bits (179), Expect(3) = 1e-045
Identities = 33/39 (84%), Positives = 39/39 (100%)
Frame = +3 / +1
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 617
E+PYD++VE+TEGYSGSDIRLVCKEAAM+PLRRLM+VLE
Sbjct: 118 ELPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLE 234
Score = 79.0 bits (166), Expect(3) = 1e-045
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3 / +1
Query: 381 WELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATT 491
WELDAAMLRRLEKRILVPLPE EARQAMFE+LLP+ T
Sbjct: 1 WELDAAMLRRLEKRILVPLPEREARQAMFEDLLPSQT 111
Score = 58.8 bits (122), Expect(3) = 1e-045
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3 / +1
Query: 660 GPLKPDDIELALRNTRPSAHLHAHRYEKFNQDYGS 764
GP+ DDI +AL+ TRPSAHL+ +RY+KFN +YGS
Sbjct: 280 GPITSDDIIVALKITRPSAHLNENRYQKFNDEYGS 384
Score = 56.1 bits (116), Expect(3) = 1e-021
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -1 / -1
Query: 610 TDMRRLSGCMAASLHTRRISEPE*PSVFSTSMSYGISNFEVVAGRSSS 467
T + RLSG +AASL T+RISEPE*PSV ST SYG S RSS+
Sbjct: 227 TAINRLSGRIAASLQTKRISEPE*PSVLSTIRSYGSSAPVCEGKRSSN 84
Score = 48.7 bits (100), Expect(3) = 1e-021
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -3 / -3
Query: 467 KHRLPCFTFRKRYKNPLLKPAEHGCIQFP 381
KH L CFT RKR+KN L K ++HG IQ P
Sbjct: 87 KHGLTCFTLRKRHKNTLFKTSKHGSIQLP 1
Score = 36.8 bits (74), Expect(3) = 1e-021
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -1 / -1
Query: 778 EQTTWLP*SWLNFS*RCAWRCADGLVFLNASSI 680
+ WLP S LNF *R + R ADGLV L A+ I
Sbjct: 398 QYVAWLPYSSLNFW*RFSLRWADGLVILRATII 300
>gb|CF399370.1|CF399370 RTDS3_28_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_G12_A022 3', mRNA sequence
Length = 659
Score = 142 bits (304), Expect(2) = 5e-045
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / -1
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PWK LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV
Sbjct: 398 PQFFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVA 219
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 218 NLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 108
Score = 86.3 bits (182), Expect(2) = 8e-022
Identities = 46/88 (52%), Positives = 52/88 (59%)
Frame = -1 / +1
Query: 265 SPRWLMIASISSRNIVDGA*CLASSNRTLTSFSESPRHLLTIDDAEMLKKVVLHSVATAF 86
SPR SISS NI+ GA A N+ TSFS SP H T + E+LK V SVATAF
Sbjct: 136 SPRVPHKESISSMNIIAGAESRAI*NKFATSFSLSPIHFETRSEEEILKNVESASVATAF 315
Query: 85 ASIVFPVPGGPKSKMPFHGERRPVKYFG 2
A FPVPGGP + F G R PVK +G
Sbjct: 316 AKYDFPVPGGPYKRKAFQGFRLPVKNWG 399
Score = 60.2 bits (125), Expect(2) = 5e-045
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3 / -1
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAM 401
+E EASRR+KTE+L+QM G+ +D V VLAATN P+ LD A+
Sbjct: 131 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAI 3
Score = 38.2 bits (77), Expect(2) = 8e-022
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -1 / +1
Query: 400 MAASNSQGRFVAASTNTKSFVFVKPSI*ISSSVFKRRLASCSL 272
+A SN+ G VAA T T S +F P I +SVF RR AS SL
Sbjct: 4 IA*SNAYGVLVAARTRTLSSLFPTPCICTRTSVFIRREASLSL 132
>gb|CF663657.1|CF663657 RTCNT1_4_G11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_G11_A029 3', mRNA sequence
Length = 701
Score = 142 bits (305), Expect(2) = 3e-044
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / -2
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 388 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 209
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR APS IF+DEID++ QRGE + R
Sbjct: 208 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 98
Score = 57.0 bits (118), Expect(2) = 3e-044
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3 / -2
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELD 392
+E EASRR+KTELL+QM G+ + V VLAATN P+ LD
Sbjct: 121 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALD 2
>gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR40 3' end, mRNA sequence
Length = 848
Score = 140 bits (300), Expect(2) = 4e-035
Identities = 58/65 (89%), Positives = 58/65 (89%)
Frame = +3 / +1
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
PKYF GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSE L K
Sbjct: 538 PKYFRGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSENL*K 717
Query: 183 VLFEL 197
L
Sbjct: 718 YFLRL 732
Score = 114 bits (244), Expect(2) = 1e-043
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = -1 / -1
Query: 172 FSESPRHLLTIDDAEMLKKVVLHSVATAFASIVFPVPGGPKSKMPFHGERRPVKYFG 2
FSESPRHLLT+DDA+MLK VVLHSVATA ASIVFPVPGGP ++PF G+RRP+KY G
Sbjct: 707 FSESPRHLLTMDDADMLKNVVLHSVATALASIVFPVPGGPNRRIPFQGDRRPLKYLG 537
Score = 104 bits (221), Expect(2) = 2e-032
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3 / +3
Query: 171 KLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 314
KLVKVLFE+ARHHAPSTIFLDEIDAIIS RGE RSEHEASRRLKTELL
Sbjct: 705 KLVKVLFEVARHHAPSTIFLDEIDAIISHRGERRSEHEASRRLKTELL 848
Score = 83.1 bits (175), Expect(2) = 1e-043
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = -1 / -2
Query: 313 SSSVFKRRLASCSLRASPRWLMIASISSRNIVDGA*CLASSNRTLTSF 170
SSSVFKR LASCSLR SPR L+IASISSR IVDGA*CLA+S T TSF
Sbjct: 847 SSSVFKRLLASCSLRLSPR*LIIASISSRKIVDGA*CLATSKSTFTSF 704
Score = 56.1 bits (116), Expect(2) = 2e-032
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 29 SMERHLTFWPPRNRKDNAGKSGRY*VQNHLLQHFSIINCQQMAWRFRE 172
++ER + WP N KDNA + Y*VQN++LQH II+C Q+A FR+
Sbjct: 564 ALERDSSIWPTWNWKDNACQGSGY*VQNNILQHICIIHC*QVAR*FRK 707
Score = 29.0 bits (57), Expect(2) = 4e-035
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2 / +2
Query: 212 TIHNIP**NRCYHQPAW*SSQ*A*G*SSLED*AT 313
TI+N+ *N CY+ W* +Q*A + +D*AT
Sbjct: 746 TINNLSR*N*CYY*SPW*KAQ*ARSK*TFKD*AT 847
>gb|CO162833.1|CO162833 FLD1_37_F12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F12_A029 5', mRNA sequence
Length = 769
Score = 124 bits (265), Expect(3) = 2e-042
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +3
Query: 18 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 197
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 309 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 488
Query: 198 ARHHAPSTIFLDEIDAIISQR 260
A +P+ IF+DE+D+++ QR
Sbjct: 489 AAKVSPTIIFIDEVDSMLGQR 551
Score = 58.8 bits (122), Expect(3) = 2e-042
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +3 / +3
Query: 330 LTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEEL 476
L+KT + V VLAATN P++LD A++RR ++RI+V LP E+R+ + L
Sbjct: 621 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTL 767
Score = 28.6 bits (56), Expect(3) = 2e-042
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 276 EHEASRRLKTELLIQMDGL 332
EHEA R++K E + DGL
Sbjct: 564 EHEAMRKIKNEFMAHWDGL 620
>gb|DR167388.1|DR167388 RTPHOS1_18_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_B05_A029 5', mRNA sequence
Length = 765
Score = 102 bits (217), Expect(3) = 2e-042
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +3 / +2
Query: 60 PGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEI 239
PGTGKTMLAKAVATE F NIS S++ SKW G++EK VK +F LA APS IF+DE+
Sbjct: 2 PGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEV 181
Query: 240 DAIISQRGE 266
D+++ +RG+
Sbjct: 182 DSMLGRRGK 208
Score = 80.3 bits (169), Expect(3) = 2e-042
Identities = 35/91 (38%), Positives = 55/91 (60%)
Frame = +3 / +2
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
T+ + V VLAATN P++LD A++RR +R++V LP+ E R + +L +
Sbjct: 275 TRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFKI 454
Query: 513 DILVEKTEGYSGSDIRLVCKEAAMQPLRRLM 605
+ L T+GYSGSD++ +C AA Q +R L+
Sbjct: 455 EELATATDGYSGSDLKSLCTTAAYQRIRELL 547
Score = 29.0 bits (57), Expect(3) = 2e-042
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 273 SEHEASRRLKTELLIQMDGL 332
SEH A R+LK E + DGL
Sbjct: 212 SEHSAMRKLKNEFMASWDGL 271
>gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 5', mRNA sequence
Length = 773
Score = 88.6 bits (187), Expect(3) = 4e-042
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 276 EHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEAR 455
E E SRR+KTE L+QM+G+ + V VL ATN+PW LD A+ RR EKRI +PLP EAR
Sbjct: 630 ESEGSRRIKTEFLVQMNGVGHDDTGVLVLGATNIPWALDNAIKRRFEKRIYIPLPGLEAR 451
Query: 456 QAMFE 470
+ MFE
Sbjct: 450 KRMFE 436
Score = 71.6 bits (150), Expect(3) = 4e-042
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3 / -3
Query: 129 SASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 278
S+S +VSKW+GDSE+LV+ LFE+AR P+ IF+DE+D++ R E SE
Sbjct: 771 SSSDLVSKWQGDSERLVRQLFEMARESKPAIIFIDEVDSLAGTRNEGESE 622
Score = 50.6 bits (104), Expect(3) = 4e-042
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3 / -3
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMS 608
Y L E+TEGYSGSDI ++ ++A MQP+R++MS
Sbjct: 393 YRELAEQTEGYSGSDIAIIVRDALMQPVRKVMS 295
>gb|CO158046.1|CO158046 FLD1_4_D04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_D04_A029 3', mRNA sequence
Length = 586
Score = 93.2 bits (197), Expect(3) = 2e-041
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = +3 / +1
Query: 63 GTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEID 242
GTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF LA +P+ IF+DE+D
Sbjct: 1 GTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVD 180
Query: 243 AIISQR 260
+++ QR
Sbjct: 181 SMLGQR 198
Score = 87.2 bits (184), Expect(3) = 2e-041
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3 / +1
Query: 330 LTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIP 509
L+KT + V VLAATN P++LD A++RR ++RI+V LP E+R+ + LL +
Sbjct: 268 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 447
Query: 510 YDILVEKTEGYSGSDIRLVCKEAAMQPLR 596
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 448 FKELATMTDGYTGSDLKNLCTAAAFRPVR 534
Score = 28.6 bits (56), Expect(3) = 2e-041
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 276 EHEASRRLKTELLIQMDGL 332
EHEA R++K E + DGL
Sbjct: 211 EHEAMRKIKNEFMAHWDGL 267
>gb|CO200907.1|CO200907 RTCNT2_2_H02.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_H02_A029 3', mRNA sequence
Length = 788
Score = 111 bits (237), Expect(2) = 2e-040
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +3 / -3
Query: 30 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHH 209
P KG+LL+GPPGTGKT+LAKA+A E F N+ ++++SKW GDS+KLV +F LA+
Sbjct: 744 PSKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKL 565
Query: 210 APSTIFLDEIDAIISQRGEARSE 278
P+ IFLDE+D+ + QR + E
Sbjct: 564 QPAIIFLDEVDSFLGQRRSSEQE 496
Score = 75.8 bits (159), Expect(2) = 2e-040
Identities = 38/86 (44%), Positives = 51/86 (59%)
Frame = +3 / -3
Query: 351 VFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEK 530
V VLAATN P ELD A+LRRL + V +P R + E +L + I YD +
Sbjct: 426 VTVLAATNRPEELDEAILRRLPRVFEVGMPSCIERAKILEVVLKGENVEDGIDYDHIASL 247
Query: 531 TEGYSGSDIRLVCKEAAMQPLRRLMS 608
EGYSGSD+ +CK+AA P+R L++
Sbjct: 246 CEGYSGSDLTDLCKQAAYFPIRELLA 169
>gb|AL751019.1|AL751019 AL751019 RS Pinus pinaster cDNA clone RS03B07 similar to AAA
ATPASE, mRNA sequence
Length = 598
Score = 142 bits (305), Expect(2) = 8e-040
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +3 / +3
Query: 3 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVK 182
P++FTG PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV
Sbjct: 237 PQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVS 416
Query: 183 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
LF++AR APS IF+DEID++ QRGE + R
Sbjct: 417 NLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 527
Score = 42.3 bits (86), Expect(2) = 8e-040
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLA 365
+E EASRR+KTELL+QM G+ + V VLA
Sbjct: 504 NESEASRRIKTELLVQMQGVGNNDQKVLVLA 596
>gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_G06_A029 3', mRNA sequence
Length = 685
Score = 84.9 bits (179), Expect(3) = 7e-038
Identities = 33/39 (84%), Positives = 39/39 (100%)
Frame = +3 / +2
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 617
E+PYD++VE+TEGYSGSDIRLVCKEAAM+PLRRLM+VLE
Sbjct: 86 ELPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLE 202
Score = 58.8 bits (122), Expect(3) = 7e-038
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 660 GPLKPDDIELALRNTRPSAHLHAHRYEKFNQDYGS 764
GP+ DDI +AL+ TRPSAHL+ +RY+KFN +YGS
Sbjct: 248 GPITSDDIIVALKITRPSAHLNENRYQKFNDEYGS 352
Score = 52.8 bits (109), Expect(3) = 7e-038
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / +2
Query: 414 EKRILVPLPEGEARQAMFEELLPATT 491
EKRILVPLPE EARQAMFE+LLP+ T
Sbjct: 2 EKRILVPLPEREARQAMFEDLLPSQT 79
>gb|DR058914.1|DR058914 RTNIT1_14_D07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_D07_A029 5', mRNA sequence
Length = 542
Score = 111 bits (238), Expect(3) = 4e-036
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = +3 / +2
Query: 21 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 200
LL P KG+LL+GPPGTGKT+LAKA+A E F N+ ++++SKW GD++KLV +F LA
Sbjct: 32 LLGPQKGVLLYGPPGTGKTLLAKAIAKESGAVFINVRIANLMSKWFGDAQKLVSAVFSLA 211
Query: 201 RHHAPSTIFLDEIDAIISQRGEARSE 278
P+ IF+DE+D+ + QR + E
Sbjct: 212 YKLQPAIIFIDEVDSFLGQRRSSEHE 289
Score = 52.4 bits (108), Expect(3) = 4e-036
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3 / +2
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
T N V VLAATN PWELD A+LRRL + V +P R + + +L ++ I +
Sbjct: 341 TDQNARVMVLAATNRPWELDEAILRRLPQAFEVRMPNCAERAKILKVILKGENAEDNIDF 520
Query: 513 D 515
D
Sbjct: 521 D 523
Score = 26.3 bits (51), Expect(3) = 4e-036
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 273 SEHEASRRLKTELLIQMDGLT 335
SEHE +KTE + DG T
Sbjct: 278 SEHEVVTNMKTEFMALWDGFT 340
>gb|BG318079.1|BG318079 NXPV_010_C04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_C04 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 559
Score = 133 bits (284), Expect(2) = 2e-035
Identities = 55/89 (61%), Positives = 67/89 (75%)
Frame = +3 / +3
Query: 12 FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 191
FTGL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF
Sbjct: 159 FTGLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALF 338
Query: 192 ELARHHAPSTIFLDEIDAIISQRGEARSE 278
+A PS IF+DEID+I+S R E
Sbjct: 339 SVAVARQPSVIFIDEIDSIMSARSATEHE 425
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTND 347
+EHEASR LK+E LIQ DG+ D
Sbjct: 414 TEHEASRXLKSEFLIQFDGVMSNPD 488
>gb|BG318838.1|BG318838 NXPV_020_E07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_E07 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 131 bits (281), Expect(2) = 4e-035
Identities = 54/83 (65%), Positives = 66/83 (79%)
Frame = +3 / +3
Query: 12 FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 191
FTGL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF
Sbjct: 159 FTGLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALF 338
Query: 192 ELARHHAPSTIFLDEIDAIISQR 260
+A PS IF+DEID+I+S R
Sbjct: 339 SVAVARQPSVIFIDEIDSIMSAR 407
Score = 37.7 bits (76), Expect(2) = 4e-035
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTND 347
+EHEASR LK+E LIQ DG+ D
Sbjct: 414 TEHEASRXLKSEFLIQFDGVMSNXD 488
>gb|DR022259.1|DR022259 STRS1_49_H04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_H04_A034 5', mRNA sequence
Length = 862
Score = 79.0 bits (166), Expect(3) = 7e-035
Identities = 35/91 (38%), Positives = 56/91 (61%)
Frame = +3 / +2
Query: 333 TKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPY 512
+K + + VL ATN P++LD A++RRL +RI V LP+ E R + +L + +
Sbjct: 254 SKESQRILVLGATNRPFDLDDAVIRRLPRRIYVDLPDAENRAKILRVILAQEKVVDDFDF 433
Query: 513 DILVEKTEGYSGSDIRLVCKEAAMQPLRRLM 605
+ L TEGYSGSD++ +C AA +P++ L+
Sbjct: 434 NELACATEGYSGSDLKNLCIAAAYRPIQELL 526
Score = 76.7 bits (161), Expect(3) = 7e-035
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +3 / +2
Query: 87 KAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGE 266
KA+ATE F +I+ S++ SKW GD+EKL K LF A AP IF+DE+D+I+ RG
Sbjct: 8 KALATEAGANFLSITGSTLTSKWFGDAEKLTKALFSFASRLAPVIIFIDEVDSILGARGG 187
Query: 267 ARSEHEASR 293
A R
Sbjct: 188 ASEHEATRR 214
Score = 30.9 bits (61), Expect(3) = 7e-035
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 273 SEHEASRRLKTELLIQMDGL 332
SEHEA+RR++ E + DGL
Sbjct: 191 SEHEATRRMRNEFMAAWDGL 250
>gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_A11_A029 3', mRNA sequence
Length = 773
Score = 96.8 bits (205), Expect(2) = 7e-035
Identities = 44/122 (36%), Positives = 66/122 (54%)
Frame = +3 / +1
Query: 348 LVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVE 527
+V VLAATN PW++D A+ RRLEKRI +PLP E+R+ + L ++ D +
Sbjct: 235 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPAFESRKELIRINLKGVEVAPDVDIDEVAR 414
Query: 528 KTEGYSGSDIRLVCKEAAMQPLRRLMSVLEASDXXXXXXXXXXXGPLKPDDIELALRNTR 707
+TEGYSG D+ VC++A+M +RR ++ + P+ D E AL +
Sbjct: 415 RTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPIAMCDFEEALSKVQ 594
Query: 708 PS 713
S
Sbjct: 595 RS 600
Score = 71.6 bits (150), Expect(2) = 7e-035
Identities = 26/54 (48%), Positives = 42/54 (77%)
Frame = +3 / +1
Query: 132 ASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
++++ SKWRG+SE++V+ LF+LAR +APSTIF+DEID++ + RG + + R
Sbjct: 1 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRR 162
>gb|BQ695881.1|BQ695881 NXPV_033_G02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_033_G02 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 556
Score = 133 bits (284), Expect(2) = 9e-035
Identities = 55/89 (61%), Positives = 67/89 (75%)
Frame = +3 / +3
Query: 12 FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 191
FTGL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF
Sbjct: 159 FTGLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALF 338
Query: 192 ELARHHAPSTIFLDEIDAIISQRGEARSE 278
+A PS IF+DEID+I+S R E
Sbjct: 339 SVAVARQPSVIFIDEIDSIMSARSATEHE 425
Score = 35.0 bits (70), Expect(2) = 9e-035
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +3
Query: 273 SEHEASRRLKTELLIQMDGLTKTND 347
+EHEASR K+E LIQ DG+ D
Sbjct: 414 TEHEASRXXKSEFLIQFDGVMSNPD 488
>gb|DR057719.1|DR057719 RTNIT1_7_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A04_A029 5', mRNA sequence
Length = 869
Score = 105 bits (225), Expect(4) = 5e-034
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 201 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 380
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 381 QSAPCVLFFDELDSIATQRGSS 446
Score = 46.9 bits (96), Expect(4) = 5e-034
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / +3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 591 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 770
Query: 588 PLR 596
+R
Sbjct: 771 AIR 779
Score = 25.8 bits (50), Expect(4) = 5e-034
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 528 VFIIGATNRPDIIDPALLR 584
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 465 AADRVLNQLLTEMDGMT 515
>gb|CO166204.1|CO166204 FLD1_60_D04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_D04_A029 3', mRNA sequence
Length = 839
Score = 105 bits (225), Expect(4) = 5e-034
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -2
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 607 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 428
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 427 QSAPCVLFFDELDSIATQRGSS 362
Score = 46.9 bits (96), Expect(4) = 5e-034
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / -2
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 217 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 38
Query: 588 PLR 596
+R
Sbjct: 37 AIR 29
Score = 25.8 bits (50), Expect(4) = 5e-034
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 280 VFIIGATNRPDIIDPALLR 224
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 343 AADRVLNQLLTEMDGMT 293
>gb|DR015665.1|DR015665 STRS1_4_H05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_H05_A034 5', mRNA sequence
Length = 761
Score = 105 bits (225), Expect(4) = 5e-034
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 76 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 255
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 256 QSAPCVLFFDELDSIATQRGSS 321
Score = 46.9 bits (96), Expect(4) = 5e-034
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / +1
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 466 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 645
Query: 588 PLR 596
+R
Sbjct: 646 AIR 654
Score = 25.8 bits (50), Expect(4) = 5e-034
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 403 VFIIGATNRPDIIDPALLR 459
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 340 AADRVLNQLLTEMDGMT 390
>gb|CF672272.1|CF672272 RTCNT1_62_B04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_B04_A029 5', mRNA sequence
Length = 759
Score = 105 bits (225), Expect(4) = 5e-034
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 25 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 204
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 205 QSAPCVLFFDELDSIATQRGSS 270
Score = 46.9 bits (96), Expect(4) = 5e-034
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / +1
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 415 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 594
Query: 588 PLR 596
+R
Sbjct: 595 AIR 603
Score = 25.8 bits (50), Expect(4) = 5e-034
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 352 VFIIGATNRPDIIDPALLR 408
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 289 AADRVLNQLLTEMDGMT 339
>gb|CO173994.1|CO173994 NDL1_41_B04.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_B04_A029 3', mRNA sequence
Length = 756
Score = 105 bits (225), Expect(4) = 5e-034
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -2
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 641 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 462
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 461 QSAPCVLFFDELDSIATQRGSS 396
Score = 46.9 bits (96), Expect(4) = 5e-034
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / -2
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 251 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 72
Query: 588 PLR 596
+R
Sbjct: 71 AIR 63
Score = 25.8 bits (50), Expect(4) = 5e-034
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 314 VFIIGATNRPDIIDPALLR 258
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 377 AADRVLNQLLTEMDGMT 327
>gb|DT633037.1|DT633037 EST1147968 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFQ52 3' end, mRNA sequence
Length = 887
Score = 93.6 bits (198), Expect(3) = 6e-034
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTE+L+QM G+ +D V VLAATN P+ LD A+ RR +KRI +PLPE +A
Sbjct: 121 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 300
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T L
Sbjct: 301 RQHMFKVHLGDTPHNL 348
Score = 54.7 bits (113), Expect(3) = 6e-034
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +1
Query: 159 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
G+SEKLV LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 10 GESEKLVANLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 144
Score = 35.0 bits (70), Expect(3) = 6e-034
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3 / +1
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVL 614
E ++ L +TEG+SGSD+ + K+ +P+R+ +
Sbjct: 352 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAM 465
>gb|DR685649.1|DR685649 EST1075726 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB626 3' end, mRNA sequence
Length = 851
Score = 93.6 bits (198), Expect(3) = 6e-034
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +3 / +2
Query: 273 SEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEGEA 452
+E EASRR+KTE+L+QM G+ +D V VLAATN P+ LD A+ RR +KRI +PLPE +A
Sbjct: 113 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 292
Query: 453 RQAMFEELLPATTSKL 500
RQ MF+ L T L
Sbjct: 293 RQHMFKVHLGDTPHNL 340
Score = 54.7 bits (113), Expect(3) = 6e-034
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +2
Query: 159 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 293
G+SEKLV LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 2 GESEKLVANLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 136
Score = 35.0 bits (70), Expect(3) = 6e-034
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3 / +2
Query: 501 EIPYDILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVL 614
E ++ L +TEG+SGSD+ + K+ +P+R+ +
Sbjct: 344 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAM 457
>gb|DN626613.1|DN626613 EST977429 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA531, mRNA sequence
Length = 869
Score = 105 bits (225), Expect(4) = 1e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 786 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 607
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 606 QSAPCVLFFDELDSIATQRGSS 541
Score = 45.5 bits (93), Expect(4) = 1e-033
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3 / -3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL + I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 396 RLGQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICRRACKY 217
Query: 588 PLR 596
+R
Sbjct: 216 AIR 208
Score = 25.8 bits (50), Expect(4) = 1e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 459 VFIIGATNRPDIIDPALLR 403
Score = 22.1 bits (42), Expect(4) = 1e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 522 AADRVLNQLLTEMDGMT 472
>gb|DR023326.1|DR023326 STRS1_56_G11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_G11_A034 5', mRNA sequence
Length = 784
Score = 105 bits (225), Expect(4) = 2e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 210 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 389
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 390 QSAPCVLFFDELDSIATQRGSS 455
Score = 45.1 bits (92), Expect(4) = 2e-033
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3 / +3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEA 578
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 600 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 770
Score = 25.8 bits (50), Expect(4) = 2e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 537 VFIIGATNRPDIIDPALLR 593
Score = 22.1 bits (42), Expect(4) = 2e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 474 AADRVLNQLLTEMDGMT 524
>gb|CO170358.1|CO170358 NDL1_13_C10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_C10_A029 5', mRNA sequence
Length = 752
Score = 105 bits (225), Expect(4) = 2e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 177 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 356
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 357 QSAPCVLFFDELDSIATQRGSS 422
Score = 45.1 bits (92), Expect(4) = 2e-033
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3 / +3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEA 578
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 567 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 737
Score = 25.8 bits (50), Expect(4) = 2e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 504 VFIIGATNRPDIIDPALLR 560
Score = 22.1 bits (42), Expect(4) = 2e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 441 AADRVLNQLLTEMDGMT 491
>gb|CF473795.1|CF473795 RTWW2_4_A12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_A12_A021 5', mRNA sequence
Length = 661
Score = 105 bits (225), Expect(4) = 2e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 86 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 265
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 266 QSAPCVLFFDELDSIATQRGSS 331
Score = 45.1 bits (92), Expect(4) = 2e-033
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3 / +2
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEA 578
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 476 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 646
Score = 25.8 bits (50), Expect(4) = 2e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 413 VFIIGATNRPDIIDPALLR 469
Score = 22.1 bits (42), Expect(4) = 2e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +2
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 350 AADRVLNQLLTEMDGMT 400
>gb|DN614642.1|DN614642 EST967692 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC645, mRNA sequence
Length = 630
Score = 103 bits (219), Expect(4) = 3e-033
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +3 / -3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ F+ AR
Sbjct: 604 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRETFDKAR 425
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D I +QRG +
Sbjct: 424 QSAPCVLFFDELDFIATQRGSS 359
Score = 46.9 bits (96), Expect(4) = 3e-033
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3 / -3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEAAMQ 587
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+ A
Sbjct: 214 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 35
Query: 588 PLR 596
+R
Sbjct: 34 AIR 26
Score = 25.8 bits (50), Expect(4) = 3e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 277 VFIIGATNRPDIIDPALLR 221
Score = 22.1 bits (42), Expect(4) = 3e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 340 AADRVLNQLLTEMDGMT 290
>gb|DT634813.1|DT634813 EST1149744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA07 3' end, mRNA sequence
Length = 808
Score = 95.9 bits (203), Expect(4) = 6e-033
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = +3 / +2
Query: 36 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKW 155
KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVS+W
Sbjct: 584 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSRW 703
Score = 80.3 bits (169), Expect(3) = 3e-022
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = -1 / -2
Query: 154 HLLTIDDAEMLKKVVLHSVATAFASIVFPVPGGPKSKMPF 35
HLLT+DDA+MLK VVLHSVATA ASIVFPVPGGP ++PF
Sbjct: 702 HLLTMDDADMLKNVVLHSVATALASIVFPVPGGPNRRIPF 583
Score = 47.3 bits (97), Expect(4) = 6e-033
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +3 / +3
Query: 195 LARHHAPSTIFLDEIDAIIS 254
+ARHHAPSTIFLDEIDAIIS
Sbjct: 747 VARHHAPSTIFLDEIDAIIS 806
Score = 40.0 bits (81), Expect(3) = 3e-022
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -1 / -1
Query: 253 LMIASISSRNIVDGA*CLASSNRTL 179
L+IASISSR IVDGA*CLA+ + L
Sbjct: 805 LIIASISSRKIVDGA*CLATLKKVL 731
Score = 30.9 bits (61), Expect(4) = 6e-033
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 3 PKYFTGLLSPWK 38
PKYF GLLSPW+
Sbjct: 550 PKYFRGLLSPWE 585
Score = 23.1 bits (44), Expect(4) = 6e-033
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3 / +3
Query: 156 RGDSEKLVKVLFELARHH 209
RGDSEKL K F H
Sbjct: 705 RGDSEKLCKSTFLRVARH 758
Score = 23.1 bits (44), Expect(3) = 3e-022
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 31 GERRPVKYFG 2
G+RRP+KY G
Sbjct: 578 GDRRPLKYLG 549
>gb|CO362049.1|CO362049 NDL2_8_G08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_G08_A029 5', mRNA sequence
Length = 757
Score = 105 bits (225), Expect(4) = 6e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 199 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 378
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 379 QSAPCVLFFDELDSIATQRGSS 444
Score = 43.2 bits (88), Expect(4) = 6e-033
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3 / +1
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCK 572
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI +C+
Sbjct: 589 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQ 753
Score = 25.8 bits (50), Expect(4) = 6e-033
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 526 VFIIGATNRPDIIDPALLR 582
Score = 22.1 bits (42), Expect(4) = 6e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 463 AADRVLNQLLTEMDGMT 513
>gb|DN630131.1|DN630131 EST980947 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABP55, mRNA sequence
Length = 749
Score = 105 bits (225), Expect(4) = 2e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 188 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 367
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 368 QSAPCVLFFDELDSIATQRGSS 433
Score = 41.8 bits (85), Expect(4) = 2e-032
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3 / +2
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDIRLVCKEA 578
RL++ I +PLP+ +R +F+ L + ++ L T+ +SG+DI +C+ A
Sbjct: 578 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQRFSGADITEICRRA 748
Score = 25.8 bits (50), Expect(4) = 2e-032
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 515 VFIIGATNRPDIIDPALLR 571
Score = 22.1 bits (42), Expect(4) = 2e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +2
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 452 AADRVLNQLLTEMDGMT 502
>gb|DN633647.1|DN633647 EST984463 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD976, mRNA sequence
Length = 852
Score = 105 bits (225), Expect(4) = 1e-031
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 313 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 492
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 493 QSAPCVLFFDELDSIATQRGSS 558
Score = 39.1 bits (79), Expect(4) = 1e-031
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3 / +1
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDI 557
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI
Sbjct: 703 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADI 852
Score = 25.8 bits (50), Expect(4) = 1e-031
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 640 VFIIGATNRPDIIDPALLR 696
Score = 22.1 bits (42), Expect(4) = 1e-031
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 577 AADRVLNQLLTEMDGMT 627
>gb|CO361978.1|CO361978 NDL2_8_G08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_G08_A029 3', mRNA sequence
Length = 776
Score = 105 bits (225), Expect(4) = 1e-031
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 24 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 203
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 228 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 407
Query: 204 HHAPSTIFLDEIDAIISQRGEA 269
AP +F DE+D+I +QRG +
Sbjct: 408 QSAPCVLFFDELDSIATQRGSS 473
Score = 39.1 bits (79), Expect(4) = 1e-031
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3 / +3
Query: 408 RLEKRILVPLPEGEARQAMFEELLPATTSKLEIPYDILVEKTEGYSGSDI 557
RL++ I +PLP+ +R +F+ L + ++ L T+G+SG+DI
Sbjct: 618 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADI 767
Score = 25.8 bits (50), Expect(4) = 1e-031
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 351 VFVLAATNLPWELDAAMLR 407
VF++ ATN P +D A+LR
Sbjct: 555 VFIIGATNRPDIIDPALLR 611
Score = 22.1 bits (42), Expect(4) = 1e-031
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 285 ASRRLKTELLIQMDGLT 335
A+ R+ +LL +MDG+T
Sbjct: 492 AADRVLNQLLTEMDGMT 542
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 654,204,220
Number of Sequences: 355925
Number of extensions: 9392903
Number of successful extensions: 44375
Number of sequences better than 1.0e-020: 163
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18050299640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)