TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root w... 190 9e-048
gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root w... 190 9e-048
gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side ... 190 9e-048
gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch... 190 9e-048
gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch... 190 9e-048
gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch... 190 9e-048
gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus cal... 190 9e-048
gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus cal... 190 9e-048
gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response R... 190 9e-048
gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus m... 190 9e-048
gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood... 187 6e-047
gb|DR024846.1|DR024846 STRS1_67_G11.g1_A034 Shoot tip pitch... 187 6e-047
gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfu... 186 1e-046
gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch... 184 4e-046
gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Plani... 184 5e-046
gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine ro... 183 7e-046
gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine ro... 183 7e-046
gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine ro... 183 7e-046
gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism... 183 7e-046
gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism... 183 7e-046
gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblo... 183 7e-046
gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblo... 183 7e-046
gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch... 183 7e-046
gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblo... 182 3e-045
gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo li... 182 3e-045
gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response R... 181 5e-045
gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblo... 178 2e-044
gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciat... 178 3e-044
gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response R... 178 3e-044
gb|DR682506.1|DR682506 EST1072581 Normalized pine embryo li... 177 6e-044
gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Plani... 168 4e-041
gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciat... 165 3e-040
gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Plani... 164 6e-040
gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Plani... 163 1e-039
gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip libra... 103 2e-038
gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood... 157 5e-038
gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus ni... 149 2e-035
gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side ... 143 1e-033
gb|DN458811.1|DN458811 EST954610 Sequencing ESTs from loblo... 143 1e-033
gb|AW985251.1|AW985251 NXNV_132_D03_F Nsf Xylem Normal wood... 143 1e-033
gb|BX682793.1|BX682793 BX682793 Pinus pinaster differenciat... 141 5e-033
gb|DT626827.1|DT626827 EST1159903 Sequencing ESTs from lobl... 132 2e-030
gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfu... 127 5e-029
gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood... 126 2e-028
gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciat... 125 2e-028
gb|CF402878.1|CF402878 RTWW1_23_F05.g1_A015 Well-watered lo... 124 6e-028
gb|AW290272.1|AW290272 NXNV017F11F Nsf Xylem Normal wood Ve... 121 6e-027
gb|CD026930.1|CD026930 NXNV017F11 Nsf Xylem Normal wood Ver... 121 6e-027
gb|CV139033.1|CV139033 EST850242 Sequencing ESTs from loblo... 86 1e-025
gb|BQ635289.1|BQ635289 NXRV078_E04_F NXRV (Nsf Xylem Root w... 111 3e-024
gb|BQ697713.1|BQ697713 NXPV_052_A04_F NXPV (Nsf Xylem Plani... 105 2e-022
gb|DN445630.1|DN445630 EST941429 Sequencing ESTs from loblo... 105 4e-022
gb|CF402808.1|CF402808 RTWW1_23_F05.b1_A015 Well-watered lo... 101 5e-021
gb|CF664345.1|CF664345 RTCNT1_9_E05.b1_A029 Root control Pi... 101 5e-021
>gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV082_F11 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 632
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 153 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 332
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 333 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 419
Score = 123 bits (264), Expect = 9e-028
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 415 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 236
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V MHTP A LVAS AS T TCL+A GL
Sbjct: 235 VNMHTP*ASLVAS*ASQTTLTCLIAEGL 152
>gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B08 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +1
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 223 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 402
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 403 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 489
Score = 123 bits (264), Expect = 9e-028
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 485 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 306
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V MHTP A LVAS AS T TCL+A GL
Sbjct: 305 VNMHTP*ASLVAS*ASQTTLTCLIAEGL 222
>gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_E05 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 404
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 81 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 260
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 261 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 347
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 343 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 164
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 163 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 80
>gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 3', mRNA sequence
Length = 673
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +1
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 79 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 258
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 259 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 345
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 341 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 162
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 161 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 78
>gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 5', mRNA sequence
Length = 674
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 186 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 365
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 366 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 452
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 448 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 269
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 268 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 185
>gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_C07_A034 5', mRNA sequence
Length = 822
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 141 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 320
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 321 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 407
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 403 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 224
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 223 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 140
>gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 3', mRNA sequence
Length = 858
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 161 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 340
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 341 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 427
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -1
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 423 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 244
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 243 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 160
>gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 5', mRNA sequence
Length = 695
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 218 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 397
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 398 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 484
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 480 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 301
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 300 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 217
>gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_H02_A033 3', mRNA sequence
Length = 802
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 101 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 280
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 281 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 367
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 363 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 184
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 183 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 100
>gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_E10_A029 3', mRNA sequence
Length = 813
Score = 190 bits (409), Expect = 9e-048
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 48 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 227
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 228 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 314
Score = 124 bits (266), Expect = 5e-028
Identities = 60/88 (68%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 310 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 131
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 130 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 47
>gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_F06 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 476
Score = 187 bits (403), Expect = 6e-047
Identities = 74/89 (83%), Positives = 82/89 (92%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 111 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 290
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKL +IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 291 EKLXKIGFIVYSIGKPLDPWVKDLPASA* 377
Score = 123 bits (263), Expect = 1e-027
Identities = 59/88 (67%), Positives = 64/88 (72%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI +FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 373 ADAGRSFTHGSRGLPME*TMKPIXXSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 194
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 193 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 110
>gb|DR024846.1|DR024846 STRS1_67_G11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_G11_A034 5', mRNA sequence
Length = 400
Score = 187 bits (403), Expect = 6e-047
Identities = 72/86 (83%), Positives = 81/86 (94%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEF+TLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 140 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFRTLDFQKIHDNMQKPAFIFDGRNIVDV 319
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYSIGKPLD W+KD+PA
Sbjct: 320 EKLRKIGFIVYSIGKPLDPWVKDLPA 397
Score = 123 bits (263), Expect = 1e-027
Identities = 59/86 (68%), Positives = 64/86 (74%)
Frame = -2 / -2
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHSV+
Sbjct: 396 AGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHSVK 217
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
MHTP A LVAS AS T TCL+A GL
Sbjct: 216 MHTP*ASLVAS*ASQTTLTCLIAEGL 139
>gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_B09_A029 3', mRNA sequence
Length = 737
Score = 186 bits (401), Expect = 1e-046
Identities = 74/89 (83%), Positives = 82/89 (92%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQK AF+FDGRNI+D
Sbjct: 50 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKSAFIFDGRNIVDV 229
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 230 EKLRKIGFIVYSIGKPLDPWVKDLPASA* 316
Score = 121 bits (259), Expect = 4e-027
Identities = 59/88 (67%), Positives = 64/88 (72%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK A FC+LS IF SRVLNSSHS
Sbjct: 312 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNADFCILS*IF*KSRVLNSSHS 133
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V+MHTP A LVAS AS T TCL+A GL
Sbjct: 132 VKMHTP*ASLVAS*ASQTTLTCLIAEGL 49
>gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_G11_A034 3', mRNA sequence
Length = 766
Score = 184 bits (397), Expect = 4e-046
Identities = 73/86 (84%), Positives = 80/86 (93%)
Frame = +2 / +2
Query: 23 AIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKL 202
AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D EKL
Sbjct: 2 AIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKL 181
Query: 203 REIGFIVYSIGKPLDAWLKDMPAVA* 280
R+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 182 RKIGFIVYSIGKPLDPWVKDLPASA* 259
Score = 121 bits (258), Expect = 6e-027
Identities = 58/85 (68%), Positives = 63/85 (74%)
Frame = -2 / -2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 255 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 76
Query: 96 VRMHTPWAPLVASYASHTQFTCLMA 22
V+MHTP A LVAS AS T TCL+A
Sbjct: 75 VKMHTP*ASLVAS*ASQTTLTCLIA 1
>gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_D02 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 184 bits (396), Expect = 5e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +3
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 162 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 341
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 342 AEKLRKIGFIVYSVGKPLDXWIKDLPA 422
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -3
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 421 AGRSLIHXSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 242
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 241 IQTP*AFLVAS*ASHTTLICLEAVGL 164
>gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G07_A022 5', mRNA
sequence
Length = 791
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 196 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 375
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 376 AEKLRKIGFIVYSVGKPLDPWIKDLPA 456
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -1
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 455 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 276
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 275 IQTP*AFLVAS*ASHTTLICLEAVGL 198
>gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G02_A022 3', mRNA
sequence
Length = 632
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 115 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 294
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 295 AEKLRKIGFIVYSVGKPLDPWIKDLPA 375
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -1
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 374 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 195
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 194 IQTP*AFLVAS*ASHTTLICLEAVGL 117
>gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_F02_A022 3', mRNA
sequence
Length = 676
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +3
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 159 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 338
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 339 AEKLRKIGFIVYSVGKPLDPWIKDLPA 419
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -1
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 418 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 239
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 238 IQTP*AFLVAS*ASHTTLICLEAVGL 161
>gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 3', mRNA sequence
Length = 870
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 55 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 234
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 235 AEKLRKIGFIVYSVGKPLDPWIKDLPA 315
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 314 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 135
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 134 IQTP*AFLVAS*ASHTTLICLEAVGL 57
>gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 5', mRNA sequence
Length = 817
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 169 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 348
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 349 AEKLRKIGFIVYSVGKPLDPWIKDLPA 429
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -3
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 428 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 249
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 248 IQTP*AFLVAS*ASHTTLICLEAVGL 171
>gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAZ35 5' end, mRNA sequence
Length = 915
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 451 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 630
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 631 AEKLRKIGFIVYSVGKPLDPWIKDLPA 711
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 710 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 531
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 530 IQTP*AFLVAS*ASHTTLICLEAVGL 453
>gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG215 5' end, mRNA sequence
Length = 859
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +2
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 590 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 769
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 770 AEKLRKIGFIVYSVGKPLDPWIKDLPA 850
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 849 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 670
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 669 IQTP*AFLVAS*ASHTTLICLEAVGL 592
>gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_A06_A034 3', mRNA sequence
Length = 841
Score = 183 bits (395), Expect = 7e-046
Identities = 68/87 (78%), Positives = 80/87 (91%)
Frame = +2 / +3
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 156 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 335
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 336 AEKLRKIGFIVYSVGKPLDPWIKDLPA 416
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -1
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 415 AGRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 236
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 235 IQTP*AFLVAS*ASHTTLICLEAVGL 158
>gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHB32 5' end, mRNA sequence
Length = 943
Score = 182 bits (391), Expect = 3e-045
Identities = 67/86 (77%), Positives = 79/86 (91%)
Frame = +2 / +2
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 686 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 865
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMP 268
EKLR+IGFIVYS+GKPLD W+KD+P
Sbjct: 866 AEKLRKIGFIVYSVGKPLDPWIKDLP 943
Score = 104 bits (222), Expect = 5e-022
Identities = 53/85 (62%), Positives = 57/85 (67%)
Frame = -2 / -2
Query: 267 GMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVRM 88
G SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR+
Sbjct: 942 GRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVRI 763
Query: 87 HTPWAPLVASYASHTQFTCLMAVGL 13
TP A LVAS ASHT CL AVGL
Sbjct: 762 QTP*AFLVAS*ASHTTLICLEAVGL 688
>gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO92 3' end, mRNA sequence
Length = 841
Score = 182 bits (391), Expect = 3e-045
Identities = 68/87 (78%), Positives = 79/87 (90%)
Frame = +2 / +2
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN +D
Sbjct: 362 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNAVD 541
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 542 AEKLRKIGFIVYSVGKPLDPWIKDLPA 622
Score = 106 bits (226), Expect = 1e-022
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR
Sbjct: 621 AGRSLIHGSRGFPTEYTINPIFLSFSASTALRPSNTKAGFSIFS*ILP*SRFLNSSHSVR 442
Query: 90 MHTPWAPLVASYASHTQFTCLMAVGL 13
+ TP A LVAS ASHT CL AVGL
Sbjct: 441 IQTP*AFLVAS*ASHTTLICLEAVGL 364
>gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_A03_A033 3', mRNA sequence
Length = 752
Score = 181 bits (389), Expect = 5e-045
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +2 / +2
Query: 29 KQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLRE 208
KQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+
Sbjct: 2 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRK 181
Query: 209 IGFIVYSIGKPLDAWLKDMPAVA* 280
IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 182 IGFIVYSIGKPLDPWVKDLPASA* 253
Score = 118 bits (253), Expect = 3e-026
Identities = 57/83 (68%), Positives = 61/83 (73%)
Frame = -2 / -3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHS
Sbjct: 249 ADAGRSFTHGSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHS 70
Query: 96 VRMHTPWAPLVASYASHTQFTCL 28
V+MHTP A LVAS AS T TCL
Sbjct: 69 VKMHTP*ASLVAS*ASQTTLTCL 1
>gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHN31 5' end, mRNA sequence
Length = 922
Score = 178 bits (384), Expect = 2e-044
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2 / +3
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 666 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 845
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDM 265
EKLR+IGFIVYS+GKPLD W+KD+
Sbjct: 846 AEKLRKIGFIVYSVGKPLDPWIKDL 920
Score = 104 bits (222), Expect = 5e-022
Identities = 53/85 (62%), Positives = 57/85 (67%)
Frame = -2 / -1
Query: 267 GMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVRM 88
G SL S G P E T+ PI L+FS S LRPS TKAGF + S I *SR LNSSHSVR+
Sbjct: 922 GRSLIHGSRGFPTEYTINPIFLSFSASTTLRPSNTKAGFSIFS*ILP*SRFLNSSHSVRI 743
Query: 87 HTPWAPLVASYASHTQFTCLMAVGL 13
TP A LVAS ASHT CL AVGL
Sbjct: 742 QTP*AFLVAS*ASHTTLICLEAVGL 668
>gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025E08, mRNA sequence
Length = 601
Score = 178 bits (383), Expect = 3e-044
Identities = 68/89 (76%), Positives = 80/89 (89%)
Frame = +2 / -2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV VWDAYEA K AHGVCI+TEWDEF+ LDYQ+I+DNMQKPAF+FDGRNI++
Sbjct: 528 SPSAIKQVTVVWDAYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNV 349
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
E+LR+IGFIVYSIGKPLD W+KD+P A*
Sbjct: 348 EQLRKIGFIVYSIGKPLDPWVKDLPISA* 262
Score = 115 bits (246), Expect = 3e-025
Identities = 57/88 (64%), Positives = 63/88 (71%)
Frame = -2 / +2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A G SL+Q S GLP+E*TMKPI L+ S MLRPSK AGFCMLS I *S+ LNSSHS
Sbjct: 266 ADIGKSLTQGSRGLPIE*TMKPIFLSCSTLTMLRPSKMNAGFCMLS*IL**SKFLNSSHS 445
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V + TP A L AS ASHT TCL+A GL
Sbjct: 446 VTIQTP*ASLAAS*ASHTTVTCLIAEGL 529
>gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_49_C11_A033 3', mRNA sequence
Length = 717
Score = 178 bits (383), Expect = 3e-044
Identities = 68/89 (76%), Positives = 80/89 (89%)
Frame = +2 / -3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV VWDAYEA K AHGVCI+TEWDEF+ LDYQ+I+DNMQKPAF+FDGRNI++
Sbjct: 463 SPSAIKQVTVVWDAYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNV 284
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
E+LR+IGFIVYSIGKPLD W+KD+P A*
Sbjct: 283 EQLRKIGFIVYSIGKPLDPWVKDLPISA* 197
Score = 115 bits (246), Expect = 3e-025
Identities = 57/88 (64%), Positives = 63/88 (71%)
Frame = -2 / +3
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A G SL+Q S GLP+E*TMKPI L+ S MLRPSK AGFCMLS I *S+ LNSSHS
Sbjct: 201 ADIGKSLTQGSRGLPIE*TMKPIFLSCSTLTMLRPSKMNAGFCMLS*IL**SKFLNSSHS 380
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V + TP A L AS ASHT TCL+A GL
Sbjct: 381 VTIQTP*ASLAAS*ASHTTVTCLIAEGL 464
>gb|DR682506.1|DR682506 EST1072581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA32, mRNA sequence
Length = 788
Score = 177 bits (381), Expect = 6e-044
Identities = 68/89 (76%), Positives = 79/89 (88%)
Frame = +2 / -3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP AIKQV VWDAYEA K AHGVCI+TEWDEF+ LDYQ+I+DNMQKPAF+FDGRNI++
Sbjct: 342 SPCAIKQVTVVWDAYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNV 163
Query: 194 EKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
E+LR+IGFIVYSIGKPLD W+KD+P A*
Sbjct: 162 EQLRKIGFIVYSIGKPLDPWVKDLPISA* 76
Score = 111 bits (236), Expect = 6e-024
Identities = 55/88 (62%), Positives = 62/88 (70%)
Frame = -2 / +2
Query: 276 ATAGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHS 97
A G SL+Q S GLP+E*T+KPI + S MLRPSK AGFCMLS I *S+ LNSSHS
Sbjct: 80 ADIGKSLTQGSRGLPIE*TIKPIFRSCSTLTMLRPSKMNAGFCMLS*IL**SKFLNSSHS 259
Query: 96 VRMHTPWAPLVASYASHTQFTCLMAVGL 13
V + TP A L AS ASHT TCL+A GL
Sbjct: 260 VTIQTP*ASLAAS*ASHTTVTCLIAQGL 343
>gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_H11 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 528
Score = 168 bits (361), Expect = 4e-041
Identities = 66/80 (82%), Positives = 71/80 (88%)
Frame = +2 / +1
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDG NI+D
Sbjct: 268 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGXNIVDV 447
Query: 194 EKLREIGFIVYSIGKPLDAW 253
EKL IGFIVYSIGKPL W
Sbjct: 448 EKLXXIGFIVYSIGKPLXXW 507
Score = 113 bits (242), Expect = 9e-025
Identities = 54/76 (71%), Positives = 58/76 (76%)
Frame = -2 / -2
Query: 240 GLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVRMHTPWAPLVA 61
GLPME*TMKPI +FS S M PSK AGFC+LS IF SRVLNSSHSV+MHTP A LVA
Sbjct: 494 GLPME*TMKPIXXSFSTSTMXLPSKMNAGFCILS*IF*KSRVLNSSHSVKMHTP*ASLVA 315
Query: 60 SYASHTQFTCLMAVGL 13
S AS T TCL+A GL
Sbjct: 314 S*ASQTTLTCLIAEGL 267
>gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C10, mRNA sequence
Length = 673
Score = 165 bits (354), Expect = 3e-040
Identities = 65/75 (86%), Positives = 71/75 (94%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D
Sbjct: 449 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDV 628
Query: 194 EKLREIGFIVYSIGK 238
EKLR+IGFIVYSIGK
Sbjct: 629 EKLRKIGFIVYSIGK 673
Score = 116 bits (247), Expect = 2e-025
Identities = 55/75 (73%), Positives = 59/75 (78%)
Frame = -2 / -2
Query: 237 LPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVRMHTPWAPLVAS 58
LPME*TMKPI L+FS S M RPSK AGFC+LS IF SRVLNSSHSV+MHTP A LVAS
Sbjct: 672 LPME*TMKPIFLSFSTSTMFRPSKMNAGFCILS*IF*KSRVLNSSHSVKMHTP*ASLVAS 493
Query: 57 YASHTQFTCLMAVGL 13
AS T TCL+A GL
Sbjct: 492 *ASQTTLTCLIAEGL 448
>gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_E10 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 365
Score = 164 bits (352), Expect = 6e-040
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2 / +2
Query: 53 AYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSI 232
AYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+IGFIVYSI
Sbjct: 2 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 181
Query: 233 GKPLDAWLKDMPA 271
GKPLD W+KD+PA
Sbjct: 182 GKPLDXWVKDLPA 220
Score = 105 bits (224), Expect = 3e-022
Identities = 50/71 (70%), Positives = 54/71 (76%)
Frame = -2 / -3
Query: 270 AGMSLSQASSGLPME*TMKPISLNFSGSMMLRPSKTKAGFCMLSKIFW*SRVLNSSHSVR 91
AG S + S GLPME*TMKPI L+FS S M PSK AGFC+LS IF SRVLNSSHSV+
Sbjct: 219 AGRSFTHXSRGLPME*TMKPIFLSFSTSTMFLPSKMNAGFCILS*IF*KSRVLNSSHSVK 40
Query: 90 MHTPWAPLVAS 58
MHTP A LVAS
Sbjct: 39 MHTP*ASLVAS 7
>gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_073_C06 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 468
Score = 163 bits (350), Expect = 1e-039
Identities = 61/87 (70%), Positives = 73/87 (83%)
Frame = +2 / +3
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYE TK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++
Sbjct: 192 SSPTASKQISVVWDAYEXTKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVX 371
Query: 191 PEKLREIGFIVYSIGKPLDAWLKDMPA 271
EKLR+IG VYS GKPL +W+ +PA
Sbjct: 372 AEKLRKIGXXVYSXGKPLGSWIXXLPA 452
>gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03H01, mRNA sequence
Length = 650
Score = 103 bits (219), Expect(2) = 2e-038
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +2 / +3
Query: 125 YQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
++K DNMQKPAF+FDGRNI+D EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 81 FRKFSDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA* 236
Score = 76.2 bits (160), Expect(2) = 2e-038
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2 / +2
Query: 47 WDAYEATKGAHGVCILTEWDEFKTLDYQKI 136
WDAYEATK AHGVCILTEWDEFKTLD+QKI
Sbjct: 2 WDAYEATKDAHGVCILTEWDEFKTLDFQKI 91
>gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_074_B10 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 340
Score = 157 bits (338), Expect = 5e-038
Identities = 58/72 (80%), Positives = 67/72 (93%)
Frame = +2 / +3
Query: 56 YEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIG 235
YEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D EKLR+IGFIVYS+G
Sbjct: 3 YEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVG 182
Query: 236 KPLDAWLKDMPA 271
KPLD W+KD+PA
Sbjct: 183 KPLDPWIKDLPA 218
>gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_C04_A029 3', mRNA sequence
Length = 624
Score = 149 bits (320), Expect = 2e-035
Identities = 58/69 (84%), Positives = 64/69 (92%)
Frame = +2 / +3
Query: 74 AHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAW 253
AHGVCI TEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+IGFIVYSIGKPLD W
Sbjct: 3 AHGVCIXTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPW 182
Query: 254 LKDMPAVA* 280
+KD+PA A*
Sbjct: 183 VKDLPASA* 209
>gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_D03 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 439
Score = 143 bits (307), Expect = 1e-033
Identities = 56/66 (84%), Positives = 62/66 (93%)
Frame = +2 / +3
Query: 83 VCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKD 262
VCILTEWDEFKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+IGFIVYSIGKPLD W+KD
Sbjct: 3 VCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKD 182
Query: 263 MPAVA* 280
+PA A*
Sbjct: 183 LPASA* 200
>gb|DN458811.1|DN458811 EST954610 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG07 5' end, mRNA sequence
Length = 949
Score = 143 bits (307), Expect = 1e-033
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 676 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 855
Query: 191 PEKLREIGFIVYSIG 235
EKLR +G + +G
Sbjct: 856 AEKLRRLGLLCTQLG 900
>gb|AW985251.1|AW985251 NXNV_132_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_132_D03 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 330
Score = 143 bits (306), Expect = 1e-033
Identities = 58/73 (79%), Positives = 62/73 (84%)
Frame = +2 / +3
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEATK AHGVCILTEWDEFKTLD+QKI DNMQKPAF+FDG NI D
Sbjct: 111 SPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGXNIXDV 290
Query: 194 EKLREIGFIVYSI 232
EKL I I YSI
Sbjct: 291 EKLXXIXXIXYSI 329
>gb|BX682793.1|BX682793 BX682793 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121H04 similar to UDP-glucose 6-dehydrogenase
(EC 1.1.1.22), mRNA sequence
Length = 423
Score = 141 bits (302), Expect = 5e-033
Identities = 55/67 (82%), Positives = 62/67 (92%)
Frame = +2 / +2
Query: 14 SPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDP 193
SP+AIKQV+ VWDAYEA+K AHGVCILTEWDEFKTLD+QKI DNMQKPAF+ DGRNI+D
Sbjct: 221 SPSAIKQVSVVWDAYEASKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFISDGRNIVDV 400
Query: 194 EKLREIG 214
EKLR+IG
Sbjct: 401 EKLRKIG 421
>gb|DT626827.1|DT626827 EST1159903 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR78 5' end, mRNA sequence
Length = 865
Score = 132 bits (283), Expect = 2e-030
Identities = 49/63 (77%), Positives = 57/63 (90%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN++D
Sbjct: 676 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVD 855
Query: 191 PEK 199
EK
Sbjct: 856 AEK 864
>gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_A06_A029 3', mRNA sequence
Length = 421
Score = 127 bits (273), Expect = 5e-029
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = +2 / +2
Query: 95 TEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMPA 271
TEWDEFK LDY KI++NM+KPAFVFDGRN++D EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 2 TEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVGKPLDPWIKDLPA 178
>gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_094_G09 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 126 bits (269), Expect = 2e-028
Identities = 47/64 (73%), Positives = 58/64 (90%)
Frame = +2 / +2
Query: 89 ILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMP 268
I+ EWDEF+ LDYQ+I+DNMQKPAF+FDGRNI++ E+LR+IGFIVYSIGKPLD W+KD+P
Sbjct: 2 IVXEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSIGKPLDPWVKDLP 181
Query: 269 AVA* 280
A*
Sbjct: 182 ISA* 193
>gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP096G05, mRNA sequence
Length = 648
Score = 125 bits (268), Expect = 2e-028
Identities = 45/58 (77%), Positives = 54/58 (93%)
Frame = +2 / +3
Query: 98 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMPA 271
EWDEFK LDY KI++NM+KPAFVFDGRN++D EKLR+IGFIVYS+GKPLD W+KD+PA
Sbjct: 3 EWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVGKPLDPWIKDLPA 176
>gb|CF402878.1|CF402878 RTWW1_23_F05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_F05_A015 5', mRNA sequence
Length = 761
Score = 124 bits (265), Expect = 6e-028
Identities = 46/58 (79%), Positives = 53/58 (91%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNI 184
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY KI++NM+KPAFVFDGRN+
Sbjct: 586 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNV 759
>gb|AW290272.1|AW290272 NXNV017F11F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017F11 5', mRNA sequence
Length = 362
Score = 121 bits (258), Expect = 6e-027
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2 / +2
Query: 104 DEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
D FKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 2 DVFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA* 178
>gb|CD026930.1|CD026930 NXNV017F11 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017F11 5' similar to Arabidopsis thaliana sequence
At5g39320 UDP-glucose dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 362
Score = 121 bits (258), Expect = 6e-027
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2 / +2
Query: 104 DEFKTLDYQKIFDNMQKPAFVFDGRNIIDPEKLREIGFIVYSIGKPLDAWLKDMPAVA* 280
D FKTLD+QKI DNMQKPAF+FDGRNI+D EKLR+IGFIVYSIGKPLD W+KD+PA A*
Sbjct: 2 DVFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA* 178
>gb|CV139033.1|CV139033 EST850242 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBA29 5' end, mRNA sequence
Length = 904
Score = 86.3 bits (182), Expect(2) = 1e-025
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDY 127
+SPTA KQ++ VWDAYEATK AHGVCILTEWDEFK LDY
Sbjct: 715 SSPTASKQISVVWDAYEATKNAHGVCILTEWDEFKNLDY 831
Score = 50.1 bits (103), Expect(2) = 1e-025
Identities = 17/23 (73%), Positives = 22/23 (95%)
Frame = +2 / +2
Query: 131 KIFDNMQKPAFVFDGRNIIDPEK 199
KI++NM+KPAFVFDGRN++D EK
Sbjct: 836 KIYENMEKPAFVFDGRNVVDAEK 904
>gb|BQ635289.1|BQ635289 NXRV078_E04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV078_E04 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 486
Score = 111 bits (238), Expect = 3e-024
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +2 / +1
Query: 11 ASPTAIKQVNCVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIID 190
+SPTA KQ++ VWDAYEATK AHGVC+LTEWDEF L Y KI+++M+KPA DGR++I
Sbjct: 250 SSPTASKQISVVWDAYEATKNAHGVCVLTEWDEFNNLHYGKIYEDMEKPAXXXDGRHVIH 429
Query: 191 PEKLREIGFIVYS 229
P L I S
Sbjct: 430 PXXLXTIXXFALS 468
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 305,119,312
Number of Sequences: 355925
Number of extensions: 4373454
Number of successful extensions: 42494
Number of sequences better than 1.0e-020: 73
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8303856210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)