TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control P... 193 1e-048
gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response R... 192 2e-048
gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron... 192 2e-048
gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered lo... 188 3e-047
gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered lo... 188 3e-047
gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pin... 188 3e-047
gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pin... 188 3e-047
gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for... 188 3e-047
gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch... 188 3e-047
gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus adde... 188 3e-047
gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus ni... 180 7e-045
gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulf... 180 7e-045
gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added... 180 7e-045
gb|DR101601.1|DR101601 STRR1_74_B05.g1_A033 Stem Response R... 131 6e-030
gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control P... 100 3e-029
gb|CF665611.1|CF665611 RTCNT1_17_D03.b1_A029 Root control P... 103 2e-021
>gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 3', mRNA sequence
Length = 637
Score = 193 bits (415), Expect = 1e-048
Identities = 77/87 (88%), Positives = 82/87 (94%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCT+MRGVRIKKHAC+S SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 11 GPGCVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSD 190
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVY+NGGVVLP KEIKSSILKPEIVM*
Sbjct: 191 EVYTNGGVVLPHKEIKSSILKPEIVM* 271
Score = 107 bits (229), Expect = 6e-023
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = -2 / -2
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
+HMTISG +MLDLIS GR P +V+FS RAH PTVEC P++L +
Sbjct: 273 NHMTISGLRMLDLISL*GRTTPPLVYTSSETWTSSPNIVMFSTRAH*PTVECQPMILPDT 94
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFL+RTPR+ V R+SLTP+S T PG
Sbjct: 93 QACFLMRTPRIMVHRDSLTPASITQPG 13
>gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 3', mRNA sequence
Length = 858
Score = 192 bits (414), Expect = 2e-048
Identities = 77/87 (88%), Positives = 81/87 (93%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLSRCT+MRGVRIKKHAC+S SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 236 GPGCAIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSD 415
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSILKPEIVM*
Sbjct: 416 EVYSNGGVVLPHKEIKSSILKPEIVM* 496
Score = 104 bits (222), Expect = 6e-022
Identities = 45/87 (51%), Positives = 57/87 (65%)
Frame = -2 / -1
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
+HMTISG ++LDLIS GR P +V+FS RAH PTVEC P++L +
Sbjct: 498 NHMTISGLRILDLISL*GRTTPPLLYTSSETWTSSPNIVMFSTRAHWPTVECQPMILPDT 319
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFL+RTPR+ V R+SLTP+S PG
Sbjct: 318 QACFLMRTPRIMVHRDSLTPASIAQPG 238
>gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_F12_A029 3', mRNA sequence
Length = 734
Score = 192 bits (414), Expect = 2e-048
Identities = 77/87 (88%), Positives = 81/87 (93%)
Frame = +1 / +1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLSRCT+MRGVRIKKHAC+S SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 100 GPGCAIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSD 279
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSILKPEIVM*
Sbjct: 280 EVYSNGGVVLPHKEIKSSILKPEIVM* 360
Score = 104 bits (222), Expect = 6e-022
Identities = 45/87 (51%), Positives = 57/87 (65%)
Frame = -2 / -1
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
+HMTISG ++LDLIS GR P +V+FS RAH PTVEC P++L +
Sbjct: 362 NHMTISGLRILDLISL*GRTTPPLLYTSSETWTSSPNIVMFSTRAHWPTVECQPMILPDT 183
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFL+RTPR+ V R+SLTP+S PG
Sbjct: 182 QACFLMRTPRIMVHRDSLTPASIAQPG 102
>gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_C07_A022 3', mRNA sequence
Length = 573
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +3
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 69 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 248
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 249 EVYSNGGVVLPHKEIKSSITKPEIVM* 329
Score = 113 bits (242), Expect = 1e-024
Identities = 50/87 (57%), Positives = 57/87 (65%)
Frame = -2 / -3
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG +LDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 331 SHMTISGLVILDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 152
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 151 QACFLILTPLMTVQRDNLTPASITHPG 71
>gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_C10_A022 3', mRNA sequence
Length = 733
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 172 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 351
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 352 EVYSNGGVVLPHKEIKSSITKPEIVM* 432
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / -3
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 434 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 255
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 254 QACFLILTPLMTVQRDNLTPASITHPG 174
>gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 3', mRNA sequence
Length = 705
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 179 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 358
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 359 EVYSNGGVVLPHKEIKSSITKPEIVM* 439
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / -1
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 441 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 262
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 261 QACFLILTPLMTVQRDNLTPASITHPG 181
>gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 5', mRNA sequence
Length = 826
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 392 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 571
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 572 EVYSNGGVVLPHKEIKSSITKPEIVM* 652
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / -2
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 654 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 475
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 474 QACFLILTPLMTVQRDNLTPASITHPG 394
>gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_H07_A029 3', mRNA sequence
Length = 730
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 199 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 378
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 379 EVYSNGGVVLPHKEIKSSITKPEIVM* 459
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / -3
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 461 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 282
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 281 QACFLILTPLMTVQRDNLTPASITHPG 201
>gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E01_A034 3', mRNA sequence
Length = 830
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +3
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 327 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 506
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 507 EVYSNGGVVLPHKEIKSSITKPEIVM* 587
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / -2
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 589 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 410
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 409 QACFLILTPLMTVQRDNLTPASITHPG 329
>gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_C03_A029 3', mRNA sequence
Length = 793
Score = 188 bits (405), Expect = 3e-047
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / -3
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGCV+E GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+LGEDVH D
Sbjct: 344 GPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCD 165
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIKSSI KPEIVM*
Sbjct: 164 EVYSNGGVVLPHKEIKSSITKPEIVM* 84
Score = 115 bits (246), Expect = 3e-025
Identities = 51/87 (58%), Positives = 57/87 (65%)
Frame = -2 / +1
Query: 263 SHMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEM 84
SHMTISG MLDLIS G PR V+FS AHCPTV+C P+ML E
Sbjct: 82 SHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLPET 261
Query: 83 QACFLIRTPRMTVQRESLTPSSTTHPG 3
QACFLI TP MTVQR++LTP+S THPG
Sbjct: 262 QACFLILTPLMTVQRDNLTPASITHPG 342
>gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_15_F05_A029 5', mRNA sequence
Length = 716
Score = 180 bits (388), Expect = 7e-045
Identities = 71/88 (80%), Positives = 79/88 (89%)
Frame = +1 / -3
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC++E GVRLS C +M GVRIKKHAC+S SI+GWHSTVGQWAR ENMTILGEDVH D
Sbjct: 327 GPGCIIEAGVRLSNCAIMSGVRIKKHACVSWSIVGWHSTVGQWARAENMTILGEDVHISD 148
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM*E 264
E+YSNGGVVLP KEIKS+ILKPEIVM*+
Sbjct: 147 EIYSNGGVVLPHKEIKSNILKPEIVM*K 64
Score = 102 bits (218), Expect = 2e-021
Identities = 47/86 (54%), Positives = 52/86 (60%)
Frame = -2 / +2
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISG +MLDLIS G P++VIFS AHCPTVEC P ML E Q
Sbjct: 68 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 247
Query: 80 ACFLIRTPRMTVQRESLTPSSTTHPG 3
ACFLI TP + Q ESLTP+S PG
Sbjct: 248 ACFLILTPLIIAQFESLTPASIIQPG 325
>gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_A01_A029 5', mRNA sequence
Length = 665
Score = 180 bits (388), Expect = 7e-045
Identities = 71/88 (80%), Positives = 79/88 (89%)
Frame = +1 / -2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC++E GVRLS C +M GVRIKKHAC+S SI+GWHSTVGQWAR ENMTILGEDVH D
Sbjct: 382 GPGCIIEAGVRLSNCAIMSGVRIKKHACVSWSIVGWHSTVGQWARAENMTILGEDVHISD 203
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM*E 264
E+YSNGGVVLP KEIKS+ILKPEIVM*+
Sbjct: 202 EIYSNGGVVLPHKEIKSNILKPEIVM*K 119
Score = 102 bits (218), Expect = 2e-021
Identities = 47/86 (54%), Positives = 52/86 (60%)
Frame = -2 / +3
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISG +MLDLIS G P++VIFS AHCPTVEC P ML E Q
Sbjct: 123 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 302
Query: 80 ACFLIRTPRMTVQRESLTPSSTTHPG 3
ACFLI TP + Q ESLTP+S PG
Sbjct: 303 ACFLILTPLIIAQFESLTPASIIQPG 380
>gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_1_A06_A029 3', mRNA sequence
Length = 557
Score = 180 bits (388), Expect = 7e-045
Identities = 71/88 (80%), Positives = 79/88 (89%)
Frame = +1 / +1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC++E GVRLS C +M GVRIKKHAC+S SI+GWHSTVGQWAR ENMTILGEDVH D
Sbjct: 145 GPGCIIEAGVRLSNCAIMSGVRIKKHACVSWSIVGWHSTVGQWARAENMTILGEDVHISD 324
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM*E 264
E+YSNGGVVLP KEIKS+ILKPEIVM*+
Sbjct: 325 EIYSNGGVVLPHKEIKSNILKPEIVM*K 408
Score = 102 bits (218), Expect = 2e-021
Identities = 47/86 (54%), Positives = 52/86 (60%)
Frame = -2 / -1
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISG +MLDLIS G P++VIFS AHCPTVEC P ML E Q
Sbjct: 404 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 225
Query: 80 ACFLIRTPRMTVQRESLTPSSTTHPG 3
ACFLI TP + Q ESLTP+S PG
Sbjct: 224 ACFLILTPLIIAQFESLTPASIIQPG 147
>gb|DR101601.1|DR101601 STRR1_74_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 5', mRNA sequence
Length = 745
Score = 131 bits (280), Expect = 6e-030
Identities = 49/56 (87%), Positives = 53/56 (94%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDV 168
GPGC +E GVRLSRCT+MRGVRIKKHAC+S SIIGWHSTVGQWAR+ENMTILGEDV
Sbjct: 578 GPGCAIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDV 745
>gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 5', mRNA sequence
Length = 552
Score = 99.6 bits (211), Expect(2) = 3e-029
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQ 126
GPGCV+E GVRLSRCT+MRGVRIKKHAC+S SIIGWHSTVGQ
Sbjct: 362 GPGCVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQ 487
Score = 49.2 bits (101), Expect(2) = 3e-029
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1 / +3
Query: 124 QWARIENMTILGEDVHGGDEVY 189
+WAR+ENMTILGEDVH DEVY
Sbjct: 486 KWARVENMTILGEDVHVSDEVY 551
>gb|CF665611.1|CF665611 RTCNT1_17_D03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_17_D03_A029 3', mRNA sequence
Length = 644
Score = 103 bits (219), Expect = 2e-021
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +1 / -3
Query: 7 GCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTI 153
G + GVRLSRCTVMRGVRIKKHAC+S SIIGWH TVGQWAR+ENMT+
Sbjct: 147 GA*LRQGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTV 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 384,131,557
Number of Sequences: 355925
Number of extensions: 5359414
Number of successful extensions: 45701
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9219917295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)