TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404800.2.1
(1228 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt... 123 3e-062
gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methy... 126 1e-051
gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-met... 58 4e-051
gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine r... 124 4e-044
gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus adde... 124 4e-044
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 125 1e-042
gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered lo... 124 9e-042
gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus... 124 2e-041
gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine r... 124 3e-040
gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stresse... 124 9e-040
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 128 5e-039
gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered lo... 124 6e-039
gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine r... 124 6e-039
gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control P... 124 6e-039
gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pi... 118 4e-038
gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine ro... 124 2e-036
gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control P... 124 3e-036
gb|DT633801.1|DT633801 EST1148732 Normalized pine embryo li... 75 8e-036
gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine ro... 104 8e-036
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 128 2e-035
gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered lob... 124 3e-034
gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library P... 124 2e-033
gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus pota... 111 2e-032
gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus mag... 136 5e-032
emb|AX212322.1| Sequence 1 from Patent WO0159139 68 9e-032
emb|AX212323.1| Sequence 2 from Patent WO0159139 68 9e-032
gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus... 137 2e-031
gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch... 135 5e-031
gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pin... 135 7e-031
gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus... 132 1e-030
gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus ... 132 6e-030
gb|CF471118.1|CF471118 RTDS1_16_H07.g1_A015 Drought-stresse... 105 7e-030
gb|CF665567.1|CF665567 RTCNT1_16_G10.g1_A029 Root control P... 97 9e-030
gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iro... 92 2e-029
gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine ro... 92 2e-029
gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stresse... 87 8e-029
gb|CO175244.1|CO175244 NDL1_53_A11.g1_A029 Needles control ... 103 1e-028
gb|AI813142.1|AI813142 23D9 Pine Lambda Zap Xylem library P... 91 2e-028
gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Ve... 87 5e-028
gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Ver... 87 5e-028
gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine ro... 125 6e-028
gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch ... 125 8e-028
gb|DR167163.1|DR167163 RTPHOS1_17_D01.b1_A029 Roots minus p... 114 1e-027
gb|DR388552.1|DR388552 RTHG1_29_A07.b1_A029 Roots plus adde... 108 1e-027
gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus mag... 124 1e-027
gb|BX254093.1|BX254093 BX254093 Pinus pinaster differenciat... 116 2e-027
gb|CO164394.1|CO164394 FLD1_47_F03.g1_A029 Root flooded Pin... 108 2e-027
gb|CO164320.1|CO164320 FLD1_47_F03.b1_A029 Root flooded Pin... 108 2e-027
gb|CO170121.1|CO170121 NDL1_11_G04.g1_A029 Needles control ... 118 2e-027
gb|BQ696333.1|BQ696333 NXPV_041_B10_F NXPV (Nsf Xylem Plani... 100 3e-027
gb|CO167139.1|CO167139 FLD1_67_C10.b1_A029 Root flooded Pin... 106 5e-027
gb|AH014324.1|SEG_AY764741S Pinus taeda isolate 24 caffeate... 53 7e-027
gb|AH014325.1|SEG_AY764743S Pinus taeda isolate 15 caffeate... 53 7e-027
gb|AH014326.1|SEG_AY764745S Pinus taeda isolate 17_master c... 53 7e-027
gb|AH014328.1|SEG_AY764749S Pinus taeda isolate 16_master c... 53 7e-027
gb|AH014332.1|SEG_AY764757S Pinus taeda isolate 7_master ca... 53 7e-027
gb|AH014335.1|SEG_AY764763S Pinus taeda isolate 25_master c... 53 7e-027
gb|AH014339.1|SEG_AY764771S Pinus taeda isolate 26_master c... 53 7e-027
gb|AH014345.1|SEG_AY764783S Pinus taeda isolate 1_master ca... 53 7e-027
gb|AH014352.1|SEG_AY764797S Pinus taeda isolate 2_master ca... 53 7e-027
gb|AH014347.1|SEG_AY764787S Pinus taeda isolate 29_master c... 53 9e-027
gb|AH014337.1|SEG_AY764767S Pinus taeda isolate 27_master c... 53 9e-027
gb|AH014322.1|SEG_AY764737S Pinus taeda isolate 22 caffeate... 53 1e-026
gb|AH014323.1|SEG_AY764739S Pinus taeda isolate 10 caffeate... 53 1e-026
gb|AH014327.1|SEG_AY764747S Pinus taeda isolate 23_master c... 53 1e-026
gb|AH014329.1|SEG_AY764751S Pinus taeda isolate 30_master c... 53 1e-026
gb|AH014330.1|SEG_AY764753S Pinus taeda isolate 13_master c... 53 1e-026
gb|AH014331.1|SEG_AY764755S Pinus taeda isolate 28_master c... 53 1e-026
gb|AH014333.1|SEG_AY764759S Pinus taeda isolate 31_master c... 53 1e-026
gb|AH014334.1|SEG_AY764761S Pinus taeda isolate 32_master c... 53 1e-026
gb|AH014336.1|SEG_AY764765S Pinus taeda isolate 11_master c... 53 1e-026
gb|AH014338.1|SEG_AY764769S Pinus taeda isolate 8_master ca... 53 1e-026
gb|AH014340.1|SEG_AY764773S Pinus taeda isolate 5_master ca... 53 1e-026
gb|AH014341.1|SEG_AY764775S Pinus taeda isolate 3_master ca... 53 1e-026
gb|AH014342.1|SEG_AY764777S Pinus taeda isolate 4_master ca... 53 1e-026
gb|AH014344.1|SEG_AY764781S Pinus taeda isolate 9_master ca... 53 1e-026
gb|AH014346.1|SEG_AY764785S Pinus taeda isolate 19_master c... 53 1e-026
gb|AH014348.1|SEG_AY764789S Pinus taeda isolate 18_master c... 53 1e-026
gb|AH014349.1|SEG_AY764791S Pinus taeda isolate 20_master c... 53 1e-026
gb|AH014350.1|SEG_AY764793S Pinus taeda isolate 21_master c... 53 1e-026
gb|AH014351.1|SEG_AY764795S Pinus taeda isolate 12_master c... 53 1e-026
gb|AH014353.1|SEG_AY764799S Pinus taeda isolate 14_master c... 53 1e-026
gb|AH014343.1|SEG_AY764779S Pinus taeda isolate 6_master ca... 53 2e-026
gb|DR094005.1|DR094005 STRR1_11_G04.g1_A033 Stem Response R... 113 2e-026
gb|CO170118.1|CO170118 NDL1_11_F12.g1_A029 Needles control ... 113 2e-026
gb|DR060400.1|DR060400 RTNIT1_27_C10.g1_A029 Roots minus ni... 113 2e-026
gb|BG275493.1|BG275493 NXSI_139_D08_F NXSI (Nsf Xylem Side ... 112 2e-026
gb|DR384933.1|DR384933 RTHG1_5_C09.g1_A029 Roots plus added... 108 2e-026
gb|DR385935.1|DR385935 RTHG1_11_F05.g1_A029 Roots plus adde... 53 2e-026
gb|DR015347.1|DR015347 STRS1_3_A05.b1_A034 Shoot tip pitch ... 119 3e-026
gb|CX653109.1|CX653109 COLD1_63_A10.g1_A029 Root cold Pinus... 116 4e-026
gb|AW698291.1|AW698291 NXNV_071_D10_F Nsf Xylem Normal wood... 87 6e-026
dbj|BD224327.1| Materials and methods for the modification ... 111 7e-026
dbj|BD224403.1| Materials and methods for the modification ... 111 7e-026
gb|DN464246.1|DN464246 EST960045 Sequencing ESTs from loblo... 84 8e-026
gb|DR386464.1|DR386464 RTHG1_15_H04.b1_A029 Roots plus adde... 108 1e-025
gb|DR090448.1|DR090448 RTAL1_15_D01.b1_A029 Roots plus adde... 108 1e-025
gb|DR072066.1|DR072066 RTDK1_23_H03.g1_A029 Roots, dark Pin... 116 2e-025
gb|CX652979.1|CX652979 COLD1_62_D10.g1_A029 Root cold Pinus... 114 2e-025
gb|CO369886.1|CO369886 RTK1_55_A05.b1_A029 Roots minus pota... 114 2e-025
gb|CX652251.1|CX652251 COLD1_57_H09.g1_A029 Root cold Pinus... 114 2e-025
gb|CO167211.1|CO167211 FLD1_67_C10.g1_A029 Root flooded Pin... 106 6e-025
gb|DR384861.1|DR384861 RTHG1_5_C09.b1_A029 Roots plus added... 106 6e-025
gb|CX652871.1|CX652871 COLD1_62_B07.b1_A029 Root cold Pinus... 54 9e-025
gb|DR101310.1|DR101310 STRR1_72_B03.b1_A033 Stem Response R... 114 1e-024
gb|DR090910.1|DR090910 RTAL1_18_D09.b1_A029 Roots plus adde... 106 1e-024
gb|CO175243.1|CO175243 NDL1_53_A10.g1_A029 Needles control ... 114 2e-024
gb|CX652893.1|CX652893 COLD1_62_D10.b1_A029 Root cold Pinus... 111 2e-024
gb|CF385583.1|CF385583 RTDR1_4_C03.g1_A015 Loblolly pine ro... 53 2e-024
gb|DR020354.1|DR020354 STRS1_36_H04.b1_A034 Shoot tip pitch... 113 2e-024
gb|DR060317.1|DR060317 RTNIT1_27_C10.b1_A029 Roots minus ni... 113 2e-024
gb|DR093928.1|DR093928 STRR1_11_G04.b1_A033 Stem Response R... 113 2e-024
gb|CX714803.1|CX714803 RTPQ1_27_C08.b1_A032 Roots treated w... 104 2e-024
gb|BE758644.1|BE758644 NXCI_069_E06_F NXCI (Nsf Xylem Compr... 112 4e-024
gb|DR742592.1|DR742592 RTCU1_5_F03.b2_A029 Roots plus added... 103 4e-024
gb|DR686608.1|DR686608 EST1076686 Normalized pine embryo li... 53 6e-024
gb|CF665389.1|CF665389 RTCNT1_15_E12.g1_A029 Root control P... 53 6e-024
gb|DR069065.1|DR069065 RTDK1_4_D11.g1_A029 Roots, dark Pinu... 111 8e-024
gb|DR101998.1|DR101998 STRR1_77_H06.b1_A033 Stem Response R... 111 8e-024
gb|DR020424.1|DR020424 STRS1_36_H04.g1_A034 Shoot tip pitch... 111 1e-023
gb|DR080770.1|DR080770 RTFEPL1_25_C12.b1_A029 Roots plus ad... 111 1e-023
gb|DR080794.1|DR080794 RTFEPL1_25_F08.b1_A029 Roots plus ad... 111 1e-023
gb|DR386637.1|DR386637 RTHG1_16_B04.g1_A029 Roots plus adde... 108 2e-023
gb|DR101032.1|DR101032 STRR1_70_C07.b1_A033 Stem Response R... 110 2e-023
emb|AJ297297.1|PPI297297 Pinus pinaster partial mRNA for ca... 63 4e-023
gb|CX653031.1|CX653031 COLD1_63_A10.b1_A029 Root cold Pinus... 109 5e-023
gb|DR068995.1|DR068995 RTDK1_4_D11.b1_A029 Roots, dark Pinu... 109 5e-023
gb|DR078688.1|DR078688 RTFEPL1_6_F04.b1_A029 Roots plus add... 109 5e-023
gb|CO170042.1|CO170042 NDL1_11_G04.b1_A029 Needles control ... 108 7e-023
gb|DR078771.1|DR078771 RTFEPL1_6_F04.g1_A029 Roots plus add... 95 9e-023
gb|BX680279.1|BX680279 BX680279 RS Pinus pinaster cDNA clon... 99 1e-022
gb|DR057315.1|DR057315 RTNIT1_5_C05.b1_A029 Roots minus nit... 107 2e-022
gb|CX647162.1|CX647162 COLD1_14_B09.b1_A029 Root cold Pinus... 97 3e-022
gb|CO175245.1|CO175245 NDL1_53_A12.g1_A029 Needles control ... 103 7e-022
gb|DR078362.1|DR078362 RTFEPL1_3_D11.g1_A029 Roots plus add... 105 9e-022
gb|DR092192.1|DR092192 RTAL1_27_E10.b1_A029 Roots plus adde... 96 1e-021
gb|CO157658.1|CO157658 FLD1_1_E03.b1_A029 Root flooded Pinu... 96 1e-021
gb|BQ655000.1|BQ655000 NXRV089_A01_F NXRV (Nsf Xylem Root w... 74 5e-021
gb|DR161681.1|DR161681 RTFE1_13_F11.b1_A029 Roots minus iro... 100 6e-021
gb|DR165285.1|DR165285 RTPHOS1_4_A06.b1_A029 Roots minus ph... 100 6e-021
gb|BF186028.1|BF186028 NXCI_132_C07_F NXCI (Nsf Xylem Compr... 102 6e-021
>gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt) mRNA, complete cds
Length = 1421
Score = 123 bits (263), Expect(6) = 3e-062
Identities = 46/91 (50%), Positives = 61/91 (67%)
Frame = -1 / +2
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P + DLPHV A A + + V+++ GDMFE++P
Sbjct: 656 FHSLNSLVDVGGGTGTAVAEIVRAYPFITGINYDLPHVVATASSLSGVQHVGGDMFETVP 835
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 836 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 928
Score = 53.8 bits (111), Expect(6) = 3e-062
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = -1 / +2
Query: 1102 TLPQIVSRAALHPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
+L +IV++ CL R+MR L A GIF A+ + + G E YGLTPAS+ LV G
Sbjct: 242 SLGEIVAKLPTESPDAACLFRIMRFLVAKGIFRASKSAREGGAFETRYGLTPASKWLVKG 421
Score = 51.9 bits (107), Expect(6) = 3e-062
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +2
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 1067 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1177
Score = 44.6 bits (91), Expect(6) = 3e-062
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -1 / +2
Query: 1219 LDAQLELWHTSFAFIKSMALKSAVDLGIADAIHSHGGNATL 1097
L Q E W +FAF +S+A+K V LGI D I G ATL
Sbjct: 119 LQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREGSRATL 241
Score = 34.1 bits (68), Expect(6) = 3e-062
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1 / +2
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVM 710
F+ +G W P F LFN M C++ VM
Sbjct: 524 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVM 628
Score = 24.4 bits (47), Expect(6) = 3e-062
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +2
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 935 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 1033
>gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methyltransferase (COMT-1) mRNA,
partial cds
Length = 1279
Score = 126 bits (269), Expect(6) = 1e-051
Identities = 47/91 (51%), Positives = 63/91 (69%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 649 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 828
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
ADA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 829 TADAIFMKWIMHDWNDEDCIKILKNCRKAIP 921
Score = 51.5 bits (106), Expect(6) = 1e-051
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 1060 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1170
Score = 43.7 bits (89), Expect(6) = 1e-051
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -1 / +1
Query: 1219 LDAQLELWHTSFAFIKSMALKSAVDLGIADAIHSHGGNATL 1097
L Q E W +FAF +S+A+K V LGI D I G ATL
Sbjct: 115 LQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREGPRATL 237
Score = 35.4 bits (71), Expect(6) = 1e-051
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 517 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 639
Score = 25.4 bits (49), Expect(6) = 1e-051
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 970 ELVYGLTPASQLLVGG 923
E YGLTPAS+ LV G
Sbjct: 367 ETRYGLTPASKWLVKG 414
Score = 24.4 bits (47), Expect(6) = 1e-051
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 928 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 1026
>gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-methyltransferase (cOMT) gene,
complete cds
Length = 1644
Score = 58.3 bits (121), Expect(8) = 4e-051
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = -1 / +1
Query: 478 KWVLHDWGDADCIKILKNCKKAIP 407
+W++HDW D DCIKILKNC+KAIP
Sbjct: 1159 QWIMHDWNDEDCIKILKNCRKAIP 1230
Score = 53.8 bits (111), Expect(8) = 4e-051
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = -1 / +1
Query: 1102 TLPQIVSRAALHPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
+L +IV++ CL R+MR L A GIF A+ + + G E YGLTPAS+ LV G
Sbjct: 208 SLGEIVAKLPTESPDAACLFRIMRFLVAKGIFRASKSAREGGAFETRYGLTPASKWLVKG 387
Score = 51.9 bits (107), Expect(8) = 4e-051
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 1369 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1479
Score = 43.7 bits (89), Expect(8) = 4e-051
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -1 / +1
Query: 1219 LDAQLELWHTSFAFIKSMALKSAVDLGIADAIHSHGGNATL 1097
L Q E W +FAF +S+A+K V LGI D I G ATL
Sbjct: 85 LQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREGPRATL 207
Score = 36.8 bits (74), Expect(8) = 4e-051
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 538 VKYIAGDMFESIPPADAVFLK 476
V+++ GDMFE++P DA+F+K
Sbjct: 1011 VQHVGGDMFETVPTGDAIFMK 1073
Score = 36.3 bits (73), Expect(8) = 4e-051
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANA 554
F L+SLVDV I A+P ++ DLPHV A A
Sbjct: 622 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATA 747
Score = 35.4 bits (71), Expect(8) = 4e-051
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 490 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 612
Score = 24.4 bits (47), Expect(8) = 4e-051
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 1237 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 1335
>gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_C10_A021 5', mRNA
sequence
Length = 847
Score = 124 bits (265), Expect(4) = 4e-044
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 235 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 414
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 415 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 507
Score = 51.5 bits (106), Expect(4) = 4e-044
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 646 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 756
Score = 35.4 bits (71), Expect(4) = 4e-044
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 103 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 225
Score = 24.4 bits (47), Expect(4) = 4e-044
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 514 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 612
>gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_F05_A029 3', mRNA sequence
Length = 757
Score = 124 bits (265), Expect(4) = 4e-044
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 162 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 341
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 342 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 434
Score = 51.5 bits (106), Expect(4) = 4e-044
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 573 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 683
Score = 35.4 bits (71), Expect(4) = 4e-044
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 30 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 152
Score = 24.4 bits (47), Expect(4) = 4e-044
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 441 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 539
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 125 bits (268), Expect(4) = 1e-042
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = -1 / -1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+S+VDV I A+P ++ DLPHV + AP T V ++ GDMFES+P
Sbjct: 678 FHSLNSIVDVGGGTGTAVAEIVRAYPSIKGINYDLPHVVSTAPHLTGVDHVGGDMFESVP 499
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 498 MGDAIFMKWIMHDWDDEDCIKILKNCRKAIP 406
Score = 54.2 bits (112), Expect(4) = 1e-042
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -1 / -1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWKK++ E+GF DY II + ++S+IE +P
Sbjct: 267 GKERTEEEWKKLLWESGFGDYNIIDIPALQSVIEAFP 157
Score = 25.4 bits (49), Expect(4) = 1e-042
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / -1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 399 GKVIIVDVVLDADEGDNTDKKRKKAVDPIVSTV 301
Score = 24.9 bits (48), Expect(4) = 1e-042
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1 / -1
Query: 766 PAFGELFNQGMVCDSSFVM 710
P F LFN M C++ +M
Sbjct: 762 PDFNNLFNNAMACNARILM 706
>gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_E06_A022 5', mRNA sequence
Length = 721
Score = 124 bits (265), Expect(3) = 9e-042
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 396 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 575
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 576 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 668
Score = 50.1 bits (103), Expect(3) = 9e-042
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = -1 / +3
Query: 1051 CLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
CL R+MR L A GIF A+ + + G E YGLTPAS+ LV G
Sbjct: 33 CLFRIMRFLVAKGIFRASKSAREGGAFETRYGLTPASKWLVKG 161
Score = 35.4 bits (71), Expect(3) = 9e-042
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 264 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 386
>gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B07_A029 5', mRNA sequence
Length = 828
Score = 124 bits (265), Expect(4) = 2e-041
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / -3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 589 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 410
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 409 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 317
Score = 51.5 bits (106), Expect(4) = 2e-041
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / -3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 178 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 68
Score = 35.4 bits (71), Expect(4) = 2e-041
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / -3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 721 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 599
Score = 21.7 bits (41), Expect(4) = 2e-041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1 / -3
Query: 388 KVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
KVIIVD+V+ + K+ + D + T+
Sbjct: 307 KVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 212
>gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 5', mRNA
sequence
Length = 752
Score = 124 bits (265), Expect(4) = 3e-040
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 345 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 524
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 525 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 617
Score = 38.2 bits (77), Expect(4) = 3e-040
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -1 / +3
Query: 1027 LTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
L A GIF A+ + + G E YGLTPAS+ LV G
Sbjct: 6 LVAKGIFRASKSAREGGAFETRYGLTPASKWLVKG 110
Score = 35.4 bits (71), Expect(4) = 3e-040
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 213 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 335
Score = 24.4 bits (47), Expect(4) = 3e-040
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 624 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 722
>gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 5', mRNA sequence
Length = 609
Score = 124 bits (265), Expect(3) = 9e-040
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 36 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 215
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 216 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 308
Score = 51.5 bits (106), Expect(3) = 9e-040
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 447 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 557
Score = 27.2 bits (53), Expect(3) = 9e-040
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+T+ D + T+
Sbjct: 315 GKVIIVDVVLDADQGDNTDKKTKKAVDPIVGTV 413
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 128 bits (274), Expect(2) = 5e-039
Identities = 48/91 (52%), Positives = 64/91 (70%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F GL+SLVD+ I A+P ++ DLPHV A AP V+++ GDMFE++P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
ADA+F+KW++HDWGD DCIKILK+C+KAIP
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAIP 305
Score = 56.5 bits (117), Expect(2) = 5e-039
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP*LFGEYVF 155
G ER E EWKKI+SE GF YKII + +S+IE +P +Y+F
Sbjct: 456 GKERTEEEWKKILSEGGFHCYKIITIPDFQSVIEAFPS*LFDYLF 590
>gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_E06_A022 5', mRNA sequence
Length = 662
Score = 124 bits (265), Expect(3) = 6e-039
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / -3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 597 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 418
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 417 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 325
Score = 51.5 bits (106), Expect(3) = 6e-039
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / -3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 186 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 76
Score = 24.4 bits (47), Expect(3) = 6e-039
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / -3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 318 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 220
>gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 3', mRNA
sequence
Length = 641
Score = 124 bits (265), Expect(3) = 6e-039
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 48 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 227
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 228 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 320
Score = 51.5 bits (106), Expect(3) = 6e-039
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 459 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 569
Score = 24.4 bits (47), Expect(3) = 6e-039
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 327 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 425
>gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_E12_A029 3', mRNA sequence
Length = 592
Score = 124 bits (265), Expect(3) = 6e-039
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 193 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 285
Score = 51.5 bits (106), Expect(3) = 6e-039
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 424 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 24.4 bits (47), Expect(3) = 6e-039
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 292 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 390
>gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_A12_A029 3', mRNA sequence
Length = 649
Score = 118 bits (252), Expect(3) = 4e-038
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTSVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW DCIKIL+NC+KAIP
Sbjct: 193 TGDAIFMKWIMHDWNVEDCIKILQNCRKAIP 285
Score = 51.9 bits (107), Expect(3) = 4e-038
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 424 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 27.2 bits (53), Expect(3) = 4e-038
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+T+ D + T+
Sbjct: 292 GKVIIVDVVLDADQGDNTDKKTKKAVDPIVGTV 390
>gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 5', mRNA
sequence
Length = 671
Score = 124 bits (265), Expect(3) = 2e-036
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 325 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 504
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 505 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 597
Score = 35.4 bits (71), Expect(3) = 2e-036
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 193 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 315
Score = 32.2 bits (64), Expect(3) = 2e-036
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +1
Query: 1012 IFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
IF A+ + + G E YGLTPAS+ LV G
Sbjct: 1 IFRASKSAREGGAFETRYGLTPASKWLVKG 90
>gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E12_A029 3', mRNA sequence
Length = 597
Score = 124 bits (265), Expect(2) = 3e-036
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 193 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 285
Score = 51.5 bits (106), Expect(2) = 3e-036
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 429 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 539
>gb|DT633801.1|DT633801 EST1148732 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFY85 3' end, mRNA sequence
Length = 919
Score = 75.3 bits (158), Expect(4) = 8e-036
Identities = 25/54 (46%), Positives = 39/54 (72%)
Frame = -1 / +2
Query: 619 ISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDW 458
I A+P ++ DLPHV A A + + V+++ GDMFE++P DA+F+KW++HDW
Sbjct: 740 IVRAYPFIRGINYDLPHVVATASSLSRVQHVGGDMFETVPTGDAIFMKWIMHDW 901
Score = 52.8 bits (109), Expect(4) = 8e-036
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = -1 / +1
Query: 1102 TLPQIVSRAALHPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGG 923
+L +IV+ CL R+MR L A GIF A+ + + G E YGLTPAS+ LV G
Sbjct: 265 SLGEIVANLPTESPDAACLFRIMRFLVAKGIFRASKSAREGGAFETRYGLTPASKWLVKG 444
Score = 43.7 bits (89), Expect(4) = 8e-036
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -1 / +1
Query: 1219 LDAQLELWHTSFAFIKSMALKSAVDLGIADAIHSHGGNATL 1097
L Q E W +FAF +S+A+K V LGI D I G ATL
Sbjct: 142 LQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREGPRATL 264
Score = 35.4 bits (71), Expect(4) = 8e-036
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 547 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 669
>gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C03_A015 3', mRNA
sequence
Length = 649
Score = 104 bits (221), Expect(4) = 8e-036
Identities = 35/63 (55%), Positives = 48/63 (76%)
Frame = -1 / +1
Query: 595 QCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKK 416
+ S PHV A A + + V+++ GDMFE++P DA+F+KW++HDW D DCIKILKNC+K
Sbjct: 133 EASTTTSPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRK 312
Query: 415 AIP 407
AIP
Sbjct: 313 AIP 321
Score = 51.5 bits (106), Expect(4) = 8e-036
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 460 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 570
Score = 27.2 bits (53), Expect(4) = 8e-036
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLP 572
F L+SLVDV I A+P ++ DLP
Sbjct: 48 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLP 155
Score = 24.4 bits (47), Expect(4) = 8e-036
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 328 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 426
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 128 bits (274), Expect(2) = 2e-035
Identities = 48/91 (52%), Positives = 64/91 (70%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F GL+SLVD+ I A+P ++ DLPHV A AP V+++ GDMFE++P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
ADA+F+KW++HDWGD DCIKILK+C+KAIP
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAIP 305
Score = 44.1 bits (90), Expect(2) = 2e-035
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPV 212
G ER E EWKKI+SE GF YKII +
Sbjct: 456 GKERTEEEWKKILSEGGFHCYKIITI 533
>gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_A06_A015 5', mRNA sequence
Length = 722
Score = 124 bits (265), Expect(3) = 3e-034
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +2
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 269 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 448
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 449 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 541
Score = 35.4 bits (71), Expect(3) = 3e-034
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +2
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 137 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 259
Score = 24.4 bits (47), Expect(3) = 3e-034
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +2
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 548 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 646
>gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 535
Score = 124 bits (265), Expect(3) = 2e-033
Identities = 46/91 (50%), Positives = 62/91 (68%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 171 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 350
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 351 TGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 443
Score = 35.4 bits (71), Expect(3) = 2e-033
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 39 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 161
Score = 22.1 bits (42), Expect(3) = 2e-033
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFD 311
GKVIIVD+V+ + K+ + D
Sbjct: 450 GKVIIVDVVLDADQGDNTDKKRKKAVD 530
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A10_A029 3', mRNA sequence
Length = 824
Score = 111 bits (236), Expect(2) = 2e-032
Identities = 40/70 (57%), Positives = 53/70 (75%)
Frame = -1 / +3
Query: 619 ISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCI 440
I A+P ++ DLPHV A AP V+++ GDMFE++P ADA+F+KW++HDWGD DCI
Sbjct: 6 IVRAYPSIKGINYDLPHVVATAPHLLGVEHMGGDMFETVPSADAIFMKWIMHDWGDEDCI 185
Query: 439 KILKNCKKAI 410
KILK C+KAI
Sbjct: 186 KILKRCRKAI 215
Score = 52.4 bits (108), Expect(2) = 2e-032
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -1 / +3
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWKKI+ E GF YKII + +S+IE +P
Sbjct: 372 GKERTEEEWKKILLEGGFGRYKIITIPDFQSVIEAFP 482
>gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 5', mRNA sequence
Length = 607
Score = 136 bits (292), Expect(2) = 5e-032
Identities = 54/138 (39%), Positives = 80/138 (57%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ W+ + P ++FN+ M ++ VM V K D F+ +++LVDV
Sbjct: 159 FNKAHGMDPWEYLGNNPEVSKIFNEAMATNTRSVMAFVAKMYEDGFKSVATLVDVGGGMG 338
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW
Sbjct: 339 SALSIIVKEHPHIRGINLDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWP 518
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 519 DEECVKLLRRSYDATPAK 572
Score = 22.1 bits (42), Expect(2) = 5e-032
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 970 ELVYGLTPASQLLVGGSS 917
E+ +GLT S+LLV G +
Sbjct: 6 EIKFGLTGMSKLLVHGGN 59
>emb|AX212322.1| Sequence 1 from Patent WO0159139
Length = 1908
Score = 68.4 bits (143), Expect(5) = 9e-032
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F+ + LVDV I + +PH+ D+PHV A+AP +VK++ GDMF+S+P
Sbjct: 1251 FKEVQELVDVGGGVGSTLNLIVSKYPHISGINFDMPHVVADAPHYPAVKHVGGDMFDSVP 1430
Query: 499 PADAVFLK 476
A+F+K
Sbjct: 1431 SGQAIFMK 1454
Score = 53.3 bits (110), Expect(5) = 9e-032
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = -1 / +3
Query: 493 DAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
+ V L+W+LHDW D C+++LKNC KA+P +
Sbjct: 1539 NVV*LQWILHDWSDDHCLRLLKNCHKALPEK 1631
Score = 37.7 bits (76), Expect(5) = 9e-032
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -1 / +3
Query: 1069 HPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGGSSSLAPFMSLV 890
+P L R++RVL + + S + + ++G E +YGLTP + LV ++ ++
Sbjct: 867 NPDAAITLDRILRVLASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDGVSLAPLVL 1046
Query: 889 LHQ 881
++Q
Sbjct: 1047 MNQ 1055
Score = 28.6 bits (56), Expect(5) = 9e-032
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVV 698
F HG+ A++ F +FN+GM S+ +M+ ++
Sbjct: 1119 FTKAHGMNAFEYPAMDQRFNRVFNRGMAEHSTMLMNKIL 1235
Score = 22.1 bits (42), Expect(5) = 9e-032
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTINGAERDEHE 266
GKVI+VD ++ + + DL ++ N ++ E
Sbjct: 1632 GKVIVVDTILPVAAETSPYARQGFHIDLLMLAYNPGGKERTE 1757
>emb|AX212323.1| Sequence 2 from Patent WO0159139
Length = 1908
Score = 68.4 bits (143), Expect(5) = 9e-032
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F+ + LVDV I + +PH+ D+PHV A+AP +VK++ GDMF+S+P
Sbjct: 1251 FKEVQELVDVGGGVGSTLNLIVSKYPHISGINFDMPHVVADAPHYPAVKHVGGDMFDSVP 1430
Query: 499 PADAVFLK 476
A+F+K
Sbjct: 1431 SGQAIFMK 1454
Score = 53.3 bits (110), Expect(5) = 9e-032
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = -1 / +3
Query: 493 DAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
+ V L+W+LHDW D C+++LKNC KA+P +
Sbjct: 1539 NVV*LQWILHDWSDDHCLRLLKNCHKALPEK 1631
Score = 37.7 bits (76), Expect(5) = 9e-032
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -1 / +3
Query: 1069 HPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGGSSSLAPFMSLV 890
+P L R++RVL + + S + + ++G E +YGLTP + LV ++ ++
Sbjct: 867 NPDAAITLDRILRVLASHSVLSCSVTTDENGKAERLYGLTPLCKYLVKNQDGVSLAPLVL 1046
Query: 889 LHQ 881
++Q
Sbjct: 1047 MNQ 1055
Score = 28.6 bits (56), Expect(5) = 9e-032
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVV 698
F HG+ A++ F +FN+GM S+ +M+ ++
Sbjct: 1119 FTKAHGMNAFEYPAMDQRFNRVFNRGMAEHSTMLMNKIL 1235
Score = 22.1 bits (42), Expect(5) = 9e-032
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -1 / +3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTINGAERDEHE 266
GKVI+VD ++ + + DL ++ N ++ E
Sbjct: 1632 GKVIVVDTILPVAAETSPYARQGFHIDLLMLAYNPGGKERTE 1757
>gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_C06_A029 3', mRNA sequence
Length = 820
Score = 137 bits (293), Expect = 2e-031
Identities = 55/138 (39%), Positives = 79/138 (57%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ W+ + P ++FN+ M ++ VM V K D F +++LVDV
Sbjct: 9 FNKAHGMDPWEYLGNNPESNKIFNEAMATNTRSVMASVAKMYEDGFMSMATLVDVGGGMG 188
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T VK++ G+MFE IP ADAV +KW+LHDW
Sbjct: 189 SALSIIVKEHPHIRGINLDLPHVIATAPPITGVKHMEGNMFEHIPSADAVMMKWILHDWA 368
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 369 DEECVKLLRRSYDATPAK 422
>gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_E09_A034 5', mRNA sequence
Length = 665
Score = 135 bits (290), Expect = 5e-031
Identities = 54/138 (39%), Positives = 80/138 (57%)
Frame = -1 / -3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ W+ + P ++FN+ M ++ VM V K D F+ +++LVDV
Sbjct: 648 FNKAHGMDPWEYLGNNPEVSKIFNEAMATNTRSVMASVAKMYEDGFKSVATLVDVGGGMG 469
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW
Sbjct: 468 SALSIIVKEHPHIRGINLDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWP 289
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 288 DEECVKLLRRSYDATPAK 235
>gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_G05_A029 3', mRNA sequence
Length = 743
Score = 135 bits (289), Expect = 7e-031
Identities = 54/138 (39%), Positives = 79/138 (57%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ W+ + P ++FN+ M ++ VM V K D F +++LVDV
Sbjct: 48 FNKAHGMDPWEYLGNNPESNKIFNEAMATNTRSVMASVAKMYEDGFMSMATLVDVGGGMG 227
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW
Sbjct: 228 SALSIIVKEHPHIRGINLDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWA 407
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 408 DEECVKLLRRSYDATPAK 461
>gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_C02_A029 5', mRNA sequence
Length = 816
Score = 132 bits (282), Expect(2) = 1e-030
Identities = 53/138 (38%), Positives = 79/138 (57%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ ++ P F ++ N+ M ++ VM V K D F+ +++LVDV
Sbjct: 379 FNKAHGMDLFEYLGKNPEFNKILNEAMATNTRSVMASVAKMYEDGFKSMATLVDVGGGMG 558
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW
Sbjct: 559 SALSIIVKEHPHIRGINLDLPHVIATAPLITGVEHMEGNMFEHIPSADAVMMKWILHDWA 738
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 739 DEECVKLLRRSYDATPAK 792
Score = 22.1 bits (42), Expect(2) = 1e-030
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1 / +1
Query: 1000 AHRSPDDGGGELVYGLTPASQLLVGGSS 917
A ++ D ++ +GLT S+LLV G +
Sbjct: 196 ADQADDAATKKIKFGLTGISKLLVHGGN 279
>gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H01_A029 5', mRNA sequence
Length = 830
Score = 132 bits (282), Expect = 6e-030
Identities = 53/138 (38%), Positives = 79/138 (57%)
Frame = -1 / -2
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXX 635
F HG+ ++ P F ++ N+ M ++ VM V K D F+ +++LVDV
Sbjct: 817 FNKAHGMDLFEYLGKNPEFNKILNEAMATNTRSVMASVAKMYEDGFKSMATLVDVGGGMG 638
Query: 634 XXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWG 455
I PH++ LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW
Sbjct: 637 SALSIIVKEHPHIRGINLDLPHVIATAPLITGVEHMEGNMFEHIPSADAVMMKWILHDWA 458
Query: 454 DADCIKILKNCKKAIPSR 401
D +C+K+L+ A P++
Sbjct: 457 DEECVKLLRRSYDATPAK 404
>gb|CF471118.1|CF471118 RTDS1_16_H07.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_16_H07_A015 5', mRNA sequence
Length = 772
Score = 105 bits (225), Expect(3) = 7e-030
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = -1 / +1
Query: 619 ISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCI 440
I + +PH+ DL HV A+AP +VK++AGDMF+S+P A+F+KW+LHDW D C
Sbjct: 457 IVSRYPHISGINFDLSHVLADAPHYPAVKHVAGDMFDSVPSGQAIFMKWILHDWSDDHCR 636
Query: 439 KILKNCKKAIPSR 401
K+LKNC KA+P +
Sbjct: 637 KLLKNCHKALPEK 675
Score = 37.3 bits (75), Expect(3) = 7e-030
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -1 / +3
Query: 1069 HPSKIPCLRRLMRVLTAAGIFSAAHRSPDDGGGELVYGLTPASQLLVGGSSSLAPFMSLV 890
+P L R++RVL + + S + + ++G E YGLTP + LV ++ ++
Sbjct: 12 NPDAAITLDRILRVLASHSVLSCSVTTNENGKAERFYGLTPLCKYLVNNQDGVSLAPLVL 191
Query: 889 LHQ 881
++Q
Sbjct: 192 MNQ 200
Score = 26.3 bits (51), Expect(3) = 7e-030
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVV 698
F HG+ A++ F ++FN+ M +S+ +M+ ++
Sbjct: 264 FTKAHGMNAFEYPAIDQRFNKIFNRAMSENSTMLMNKIL 380
>gb|CF665567.1|CF665567 RTCNT1_16_G10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_G10_A029 5', mRNA sequence
Length = 733
Score = 97.3 bits (206), Expect(3) = 9e-030
Identities = 45/107 (42%), Positives = 61/107 (57%)
Frame = -1 / -3
Query: 796 LTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXXXXXXAI 617
+ AWD P E+FN+ + D+ VM VVK D F+ ++++VDV I
Sbjct: 731 MNAWDYFRTCPQENEIFNRALASDTRAVMASVVKVYDDGFKNVNTVVDVAGGTGSAISMI 552
Query: 616 STAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLK 476
A PH++ LDLPHV APA V+++ G+MFE IP ADAVFLK
Sbjct: 551 VEAHPHIRGINLDLPHVIDTAPALPGVEHVRGNMFEHIPRADAVFLK 411
Score = 46.0 bits (94), Expect(3) = 9e-030
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -1 / -3
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTINGAERDEHEWKKIISEAGFSDYKI 221
GKVIIVD ++G + ++ + ++ T G ER E E+KKI AG+ Y I
Sbjct: 356 GKVIIVDAIIGEEVGCVQQMRLRSDIEMMAFTDGGKERTEDEFKKIFHLAGYRRYVI 186
Score = 25.8 bits (50), Expect(3) = 9e-030
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1 / -3
Query: 454 DADCIKILKNCKKAIP 407
D C++ILK C +A P
Sbjct: 410 DEQCVEILKTCHEATP 363
>gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_C01_A029 5', mRNA sequence
Length = 784
Score = 92.3 bits (195), Expect(3) = 2e-029
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = -1 / +1
Query: 547 NTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
+ V+++ GDMFE++P DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 7 SVGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 147
Score = 51.5 bits (106), Expect(3) = 2e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 286 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 396
Score = 24.4 bits (47), Expect(3) = 2e-029
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 154 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 252
>gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 3', mRNA
sequence
Length = 491
Score = 92.3 bits (195), Expect(3) = 2e-029
Identities = 29/46 (63%), Positives = 40/46 (86%)
Frame = -1 / +2
Query: 544 TSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
+ V+++ GDMFE++P DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 2 SGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 139
Score = 51.5 bits (106), Expect(3) = 2e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +2
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 278 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 388
Score = 24.4 bits (47), Expect(3) = 2e-029
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +2
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 146 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 244
>gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 3', mRNA sequence
Length = 443
Score = 87.2 bits (184), Expect(3) = 8e-029
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1 / +1
Query: 523 GDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
GDMFE++P DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 4 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 120
Score = 51.5 bits (106), Expect(3) = 8e-029
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 259 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 369
Score = 27.2 bits (53), Expect(3) = 8e-029
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+T+ D + T+
Sbjct: 127 GKVIIVDVVLDADQGDNTDKKTKKAVDPIVGTV 225
>gb|CO175244.1|CO175244 NDL1_53_A11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A11_A029 5', mRNA sequence
Length = 760
Score = 103 bits (219), Expect(4) = 1e-028
Identities = 40/95 (42%), Positives = 59/95 (62%)
Frame = -1 / +2
Query: 685 DVFRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFES 506
D F+ +++LVD+ I A+PH++ DLP V A AP V++I+G +FE+
Sbjct: 302 DGFKDVNTLVDLGGGHGEALSLIIDAYPHIRAINFDLPQVIATAPTLPGVQHISGSLFET 481
Query: 505 IPPADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
P ADA+F+K LH W D DCIK+L NC +A+P +
Sbjct: 482 APSADAIFIKNFLHIWDDQDCIKLLSNCYQAVPDK 586
Score = 27.6 bits (54), Expect(4) = 1e-028
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1 / +2
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMV 731
F+ + G W+ P F +FN GMV
Sbjct: 176 FKNSSGQEFWNFTASNPEFNAIFNAGMV 259
Score = 27.2 bits (53), Expect(4) = 1e-028
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1 / +2
Query: 289 GAERDEHEWKKIISEAGFSDYKI 221
G ER +W +++ AGFS KI
Sbjct: 692 GRERTRKQWNELLKAAGFSLSKI 760
Score = 24.4 bits (47), Expect(4) = 1e-028
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / +2
Query: 922 SSSLAPFMSLVLHQVYVS 869
S SL PF+ L H VYV+
Sbjct: 77 SRSLVPFVLLQTHPVYVT 130
>gb|AI813142.1|AI813142 23D9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 482
Score = 90.9 bits (192), Expect(3) = 2e-028
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = -1 / +3
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 171 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 350
Query: 499 PADAVFLKWVLHDWGD 452
DA+F+KW++HDW D
Sbjct: 351 TGDAIFMKWIMHDWND 398
Score = 38.2 bits (77), Expect(3) = 2e-028
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1 / +1
Query: 448 DCIKILKNCKKAIPSRDAG 392
DCIKILKNC+KAIP G
Sbjct: 403 DCIKILKNCRKAIPDTGKG 459
Score = 35.4 bits (71), Expect(3) = 2e-028
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 39 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 161
>gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5', mRNA sequence
Length = 450
Score = 87.2 bits (184), Expect(3) = 5e-028
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1 / +1
Query: 523 GDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
GDMFE++P DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 1 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 117
Score = 51.5 bits (106), Expect(3) = 5e-028
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 256 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 366
Score = 24.4 bits (47), Expect(3) = 5e-028
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 124 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 222
>gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5' similar to Arabidopsis thaliana sequence
At4g35160 O-methyltransferase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 87.2 bits (184), Expect(3) = 5e-028
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1 / +1
Query: 523 GDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
GDMFE++P DA+F+KW++HDW D DCIKILKNC+KAIP
Sbjct: 1 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 117
Score = 51.5 bits (106), Expect(3) = 5e-028
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKIIPVLGVRSIIEVYP 179
G ER E EWK+I+ E GFS Y II + ++S+IE +P
Sbjct: 256 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 366
Score = 24.4 bits (47), Expect(3) = 5e-028
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1 / +1
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTI 293
GKVIIVD+V+ + K+ + D + T+
Sbjct: 124 GKVIIVDVVLDADQGDNTDKKRKKAVDPIVGTV 222
>gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_H07_A021 3', mRNA
sequence
Length = 644
Score = 125 bits (268), Expect = 6e-028
Identities = 50/124 (40%), Positives = 73/124 (58%)
Frame = -1 / -2
Query: 772 HKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXXXXXXAISTAFPHVQ 593
+ P F ++FN+ M + VM V K D F+ +++LVDV I PH++
Sbjct: 625 NNPEFNKIFNEAMATSTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIR 446
Query: 592 CSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKA 413
LDLPHV A AP T V+++ G+MFE IP AD V +KW+LHDW D +C+K+L+ A
Sbjct: 445 GINLDLPHVIATAPLITGVEHMEGNMFEHIPSADTVMMKWILHDWADEECVKLLRRSYDA 266
Query: 412 IPSR 401
P++
Sbjct: 265 TPAK 254
>gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_A05_A034 5', mRNA sequence
Length = 900
Score = 125 bits (267), Expect = 8e-028
Identities = 50/122 (40%), Positives = 72/122 (59%)
Frame = -1 / +2
Query: 766 PAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXXXXXXAISTAFPHVQCS 587
P F ++FN+ M + VM V K D F+ +++LVDV I PH++
Sbjct: 2 PEFNKIFNEAMATSTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGI 181
Query: 586 VLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
LDLPHV A AP T V+++ G+MFE IP AD V +KW+LHDW D +C+K+L+ A P
Sbjct: 182 NLDLPHVIATAPLITGVEHMEGNMFEHIPSADTVMMKWILHDWADEECVKLLRRSYDATP 361
Query: 406 SR 401
++
Sbjct: 362 AK 367
>gb|DR167163.1|DR167163 RTPHOS1_17_D01.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_D01_A029 3', mRNA sequence
Length = 850
Score = 114 bits (243), Expect(3) = 1e-027
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = -1 / +2
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F+ + LVDV I + +PH+ D+PHV +AP +VK++ GDMF+S+P
Sbjct: 122 FKEVQELVDVGGGVGSTLNLIVSKYPHISGINFDMPHVVVDAPHYPAVKHVGGDMFDSVP 301
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
A+F+KW+LHDW D C+++LKNC KA+P +
Sbjct: 302 SGQAIFMKWILHDWSDDHCLRLLKNCHKALPEK 400
Score = 25.8 bits (50), Expect(3) = 1e-027
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1 / +2
Query: 802 HGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVV 698
HG+ A++ F +FN+GM S+ +M+ ++
Sbjct: 2 HGMNAFEYPAMDQRFNRVFNRGMSEHSTMLMNKIL 106
Score = 22.1 bits (42), Expect(3) = 1e-027
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -1 / +2
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTINGAERDEHE 266
GKVI+VD ++ + + DL ++ N ++ E
Sbjct: 401 GKVIVVDTILPVAAETSPYARQGFHIDLLMLAYNPGGKERTE 526
>gb|DR388552.1|DR388552 RTHG1_29_A07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_A07_A029 3', mRNA sequence
Length = 794
Score = 108 bits (230), Expect(3) = 1e-027
Identities = 42/95 (44%), Positives = 60/95 (63%)
Frame = -1 / +1
Query: 685 DVFRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFES 506
D F+ +++LVDV I+ A PH++ DLP V A AP V++I+G++FES
Sbjct: 202 DGFKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFES 381
Query: 505 IPPADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
P ADA+F+K LH W D DCIK+L NC +A+P +
Sbjct: 382 APSADAIFMKNFLHSWNDEDCIKLLNNCHQALPEK 486
Score = 28.6 bits (56), Expect(3) = 1e-027
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1 / +1
Query: 289 GAERDEHEWKKIISEAGFSDYKII 218
G ER +W ++ AGFS KI+
Sbjct: 592 GGERTRKQWNDLLQAAGFSISKIV 663
Score = 24.9 bits (48), Expect(3) = 1e-027
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / +1
Query: 802 HGLTAWDLNDHKPAFGELFNQGMV 731
+G W+ +P F +FN GMV
Sbjct: 88 NGKDFWNFAAGEPEFNAIFNAGMV 159
>gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 3', mRNA sequence
Length = 775
Score = 124 bits (265), Expect = 1e-027
Identities = 50/124 (40%), Positives = 74/124 (59%)
Frame = -1 / +3
Query: 772 HKPAFGELFNQGMVCDSSFVMDIVVKECGDVFRGLSSLVDVXXXXXXXXXAISTAFPHVQ 593
+ P ++FN+ M ++ VM V K D F+ +++LVDV I PH++
Sbjct: 12 NNPEVSKIFNEAMATNTRSVMAFVAKMYEDGFKSVATLVDVGGGMGSALSIIVKEHPHIR 191
Query: 592 CSVLDLPHVAANAPANTSVKYIAGDMFESIPPADAVFLKWVLHDWGDADCIKILKNCKKA 413
LDLPHV A AP T V+++ G+MFE IP ADAV +KW+LHDW D +C+K+L+ A
Sbjct: 192 GINLDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWPDEECVKLLRRSYDA 371
Query: 412 IPSR 401
P++
Sbjct: 372 TPAK 383
>gb|BX254093.1|BX254093 BX254093 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093C03, mRNA sequence
Length = 523
Score = 116 bits (247), Expect(2) = 2e-027
Identities = 40/93 (43%), Positives = 60/93 (64%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F+ + LVDV I + +PH+ D+PHV A+AP +VK++ GDMF+S+P
Sbjct: 145 FKEVQELVDVGGGVGSTLNLIVSKYPHISGINFDMPHVVADAPHYPAVKHVGGDMFDSVP 324
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
A+F+KW+LHDW D C+++LKNC KA+P +
Sbjct: 325 SGQAIFMKWILHDWSDDHCLRLLKNCHKALPEK 423
Score = 27.6 bits (54), Expect(2) = 2e-027
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVV 698
F HG+ A++ F +FN+GM S+ +M+ ++
Sbjct: 13 FTKAHGMNAFEYPAMDQRFNRVFNRGMSEHSTLLMNKIL 129
>gb|CO164394.1|CO164394 FLD1_47_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F03_A029 5', mRNA sequence
Length = 895
Score = 108 bits (230), Expect(3) = 2e-027
Identities = 42/95 (44%), Positives = 60/95 (63%)
Frame = -1 / -3
Query: 685 DVFRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFES 506
D F+ +++LVDV I+ A PH++ DLP V A AP V++I+G++FES
Sbjct: 689 DGFKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFES 510
Query: 505 IPPADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
P ADA+F+K LH W D DCIK+L NC +A+P +
Sbjct: 509 APSADAIFMKNFLHSWNDEDCIKLLNNCHQALPDK 405
Score = 28.1 bits (55), Expect(3) = 2e-027
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1 / -3
Query: 289 GAERDEHEWKKIISEAGFSDYKII 218
G ER +W ++ AGFS KI+
Sbjct: 299 GGERTRKQWNDLLQGAGFSISKIV 228
Score = 24.9 bits (48), Expect(3) = 2e-027
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / -3
Query: 802 HGLTAWDLNDHKPAFGELFNQGMV 731
+G W+ +P F +FN GMV
Sbjct: 803 NGKDFWNFAAGEPEFNAIFNAGMV 732
>gb|CO164320.1|CO164320 FLD1_47_F03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F03_A029 3', mRNA sequence
Length = 849
Score = 108 bits (230), Expect(3) = 2e-027
Identities = 42/95 (44%), Positives = 60/95 (63%)
Frame = -1 / -3
Query: 685 DVFRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFES 506
D F+ +++LVDV I+ A PH++ DLP V A AP V++I+G++FES
Sbjct: 571 DGFKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFES 392
Query: 505 IPPADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
P ADA+F+K LH W D DCIK+L NC +A+P +
Sbjct: 391 APSADAIFMKNFLHSWNDEDCIKLLNNCHQALPDK 287
Score = 28.1 bits (55), Expect(3) = 2e-027
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1 / -3
Query: 289 GAERDEHEWKKIISEAGFSDYKII 218
G ER +W ++ AGFS KI+
Sbjct: 181 GGERTRKQWNDLLQGAGFSISKIV 110
Score = 24.9 bits (48), Expect(3) = 2e-027
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / -3
Query: 802 HGLTAWDLNDHKPAFGELFNQGMV 731
+G W+ +P F +FN GMV
Sbjct: 685 NGKDFWNFAAGEPEFNAIFNAGMV 614
>gb|CO170121.1|CO170121 NDL1_11_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_11_G04_A029 5', mRNA sequence
Length = 791
Score = 118 bits (253), Expect(2) = 2e-027
Identities = 43/93 (46%), Positives = 60/93 (64%)
Frame = -1 / +2
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F+ + LVDV I + +PH+ D+PHV A+AP +VK+++GDMFES+P
Sbjct: 65 FKEVQELVDVGGGVGSTLNLIVSRYPHISAINFDIPHVVADAPHYPAVKHVSGDMFESVP 244
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIPSR 401
AVF+KW+LHDW D C K+LKNC KA+P +
Sbjct: 245 SGQAVFMKWILHDWSDDHCRKLLKNCHKALPEK 343
Score = 24.4 bits (47), Expect(2) = 2e-027
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1 / +2
Query: 391 GKVIIVDMVVGGQSSNIKHKETQVLFDLFIMTINGAERDEHE 266
GKVI+VD ++ + H DL ++T ++ E
Sbjct: 344 GKVIVVDTILPVAAETSPHARHAFDLDLIMLTSTSGGKERTE 469
>gb|BQ696333.1|BQ696333 NXPV_041_B10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_B10 5' similar to Arabidopsis
thaliana sequence At5g54160 O-methyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 582
Score = 100 bits (212), Expect(3) = 3e-027
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -1 / +1
Query: 679 FRGLSSLVDVXXXXXXXXXAISTAFPHVQCSVLDLPHVAANAPANTSVKYIAGDMFESIP 500
F L+SLVDV I A+P ++ DLPHV A A + + V+++ GDMFE++P
Sbjct: 289 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 468
Query: 499 PADAVFLKWVLHDWGDADCIKILKNCKKAIP 407
DA+F+KW +HDW D D I C AIP
Sbjct: 469 TGDAIFMKWXMHDWNDEDXXXIXXXCXXAIP 561
Score = 35.4 bits (71), Expect(3) = 3e-027
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1 / +1
Query: 814 FEMTHGLTAWDLNDHKPAFGELFNQGMVCDSSFVMDIVVKE 692
F+ +G W P F LFN M C++ VM ++ +
Sbjct: 157 FQKANGAEIWSYASDHPDFNNLFNNAMACNARIVMKAILSK 279
Score = 25.4 bits (49), Expect(3) = 3e-027
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 970 ELVYGLTPASQLLVGG 923
E YGLTPAS+ LV G
Sbjct: 7 ETRYGLTPASKWLVKG 54
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 587,738,742
Number of Sequences: 355925
Number of extensions: 7830239
Number of successful extensions: 45198
Number of sequences better than 1.0e-020: 150
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 19014410600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)