TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 204 4e-082
gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism... 182 1e-075
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 204 3e-075
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 183 1e-071
gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus cal... 164 2e-070
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 204 1e-069
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 207 6e-069
gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pin... 158 1e-068
gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late w... 180 3e-068
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 164 8e-067
gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Plani... 147 3e-065
gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Plani... 145 1e-064
gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Plani... 144 4e-064
gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root ... 142 1e-063
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 164 1e-061
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 204 3e-061
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 183 4e-061
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 154 5e-060
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 183 9e-060
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 183 9e-060
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 204 1e-059
gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch... 134 4e-058
gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus mag... 127 2e-056
gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library P... 183 2e-055
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 201 5e-055
gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side ... 122 1e-054
gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo li... 116 7e-054
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 185 7e-054
gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated w... 127 1e-053
gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clon... 116 2e-053
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 182 2e-052
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 204 1e-051
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 204 1e-051
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 202 4e-051
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 202 5e-051
gb|BI397653.1|BI397653 NXPV_102_H10_F NXPV (Nsf Xylem Plani... 122 5e-051
gb|BI397648.1|BI397648 NXPV_102_G12_F NXPV (Nsf Xylem Plani... 121 5e-051
gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pi... 113 2e-050
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 198 9e-050
gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinu... 113 9e-050
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 196 3e-049
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 194 8e-049
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 164 2e-048
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 183 5e-047
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 183 2e-045
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 183 2e-045
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 183 2e-045
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 183 2e-045
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 183 2e-045
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 182 3e-045
gb|DR692108.1|DR692108 EST1082195 Normalized pine embryo li... 117 5e-045
gb|DR683393.1|DR683393 EST1073469 Normalized pine embryo li... 116 2e-044
gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo li... 121 3e-043
gb|BE241178.1|BE241178 NXNV_173_G07_F Nsf Xylem Normal wood... 108 2e-042
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 150 7e-042
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 165 1e-041
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 162 9e-041
gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciat... 166 2e-040
gb|AI812966.1|AI812966 2B1 Pine Lambda Zap Xylem library Pi... 103 1e-039
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 158 2e-039
gb|AW290098.1|AW290098 NXNV010H03F Nsf Xylem Normal wood Ve... 106 6e-039
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 152 8e-039
gb|CD026773.1|CD026773 NXNV010H03 Nsf Xylem Normal wood Ver... 106 8e-039
gb|BF517224.1|BF517224 NXSI_011_H04_F NXSI (Nsf Xylem Side ... 99 3e-038
gb|BG832889.1|BG832889 NXPV_083_A04_F NXPV (Nsf Xylem Plani... 122 1e-037
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 156 2e-037
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 150 2e-035
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 150 2e-035
gb|BQ634617.1|BQ634617 NXRV071_B08_F NXRV (Nsf Xylem Root w... 122 6e-034
gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood... 133 2e-030
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 133 3e-030
gb|BF186451.1|BF186451 NXCI_137_F02_F NXCI (Nsf Xylem Compr... 102 7e-029
gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus adde... 126 4e-028
gb|BG832453.1|BG832453 NXPV_073_A05_F NXPV (Nsf Xylem Plani... 107 1e-027
gb|BM903277.1|BM903277 NXRV_036_B09_F NXRV (Nsf Xylem Root ... 120 2e-026
gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 ... 116 2e-025
gb|AL750537.1|AL750537 AL750537 RN Pinus pinaster cDNA clon... 114 1e-024
gb|BQ698733.1|BQ698733 NXNV_063_A01_F Nsf Xylem Normal wood... 114 1e-024
gb|BM903440.1|BM903440 NXRV_041_F05_F NXRV (Nsf Xylem Root ... 108 6e-024
gb|BE241316.1|BE241316 NXNV_185_F10_F Nsf Xylem Normal wood... 63 1e-023
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 105 6e-022
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 105 6e-022
gb|BM493349.1|BM493349 NXLV_061_G09_F NXLV (Nsf Xylem Late ... 105 9e-022
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 104 1e-021
gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late ... 104 2e-021
gb|CO197261.1|CO197261 GEO1_5_A12.b1_A029 Root gravitropism... 104 2e-021
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 204 bits (440), Expect(2) = 4e-082
Identities = 75/129 (58%), Positives = 98/129 (75%)
Frame = +2 / +3
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R +YNL D VSR T Q
Sbjct: 315 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 494
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 495 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 674
Query: 659 KVVGLPMPP 685
K G P P
Sbjct: 675 KATGRPRLP 701
Score = 122 bits (260), Expect(2) = 4e-082
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTASAARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS+V
Sbjct: 30 NQARSVRWNLTASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVNGVSYVPST 209
Query: 185 TPVKLAEYFNAS 220
TP++LA+Y+N S
Sbjct: 210 TPLQLADYYNIS 245
Score = 118 bits (252), Expect(2) = 3e-042
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 700 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 521
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL + AGV P PT KKA PS ++FS F T S
Sbjct: 520 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 341
Query: 324 MK 319
K
Sbjct: 340 TK 335
Score = 74.8 bits (157), Expect(2) = 3e-042
Identities = 36/64 (56%), Positives = 42/64 (65%)
Frame = -2 / -1
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV T +TP A LP ASL+VRVM+++P*W DPCGLGRAALAV+F
Sbjct: 229 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALAVKFH 50
Query: 24 RKDL 13
DL
Sbjct: 49 LTDL 38
>gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_H04_A032 5', mRNA sequence
Length = 815
Score = 182 bits (392), Expect(2) = 1e-075
Identities = 66/111 (59%), Positives = 88/111 (79%)
Frame = +2 / +2
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R +YNL D VSR T Q
Sbjct: 482 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 661
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYN 631
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SL+DEY+
Sbjct: 662 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLKDEYD 814
Score = 122 bits (260), Expect(2) = 1e-075
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTASAARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS+V
Sbjct: 197 NQARSVRWNLTASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVNGVSYVPST 376
Query: 185 TPVKLAEYFNAS 220
TP++LA+Y+N S
Sbjct: 377 TPLQLADYYNIS 412
Score = 100 bits (212), Expect(2) = 8e-037
Identities = 50/103 (48%), Positives = 60/103 (58%)
Frame = -2 / -3
Query: 627 YSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSR 448
YSS +D +G+ TLTY C PR C S + D H PALS V AVH+ GYT +V R T S+
Sbjct: 810 YSSFNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT*VVQRETASK 631
Query: 447 RLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMK 319
RL + AGV P PT KKA PS ++FS F T S K
Sbjct: 630 RL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 502
Score = 74.8 bits (157), Expect(2) = 8e-037
Identities = 36/64 (56%), Positives = 42/64 (65%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV T +TP A LP ASL+VRVM+++P*W DPCGLGRAALAV+F
Sbjct: 396 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALAVKFH 217
Query: 24 RKDL 13
DL
Sbjct: 216 LTDL 205
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 204 bits (440), Expect(2) = 3e-075
Identities = 75/129 (58%), Positives = 98/129 (75%)
Frame = +2 / +3
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R +YNL D VSR T Q
Sbjct: 255 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 434
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 435 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 614
Query: 659 KVVGLPMPP 685
K G P P
Sbjct: 615 KATGRPRLP 641
Score = 118 bits (252), Expect(2) = 1e-039
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 640 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 461
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL + AGV P PT KKA PS ++FS F T S
Sbjct: 460 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 281
Query: 324 MK 319
K
Sbjct: 280 TK 275
Score = 99.1 bits (210), Expect(2) = 3e-075
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +2 / +3
Query: 38 ASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNA 217
ASAARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS+V TP++LA+Y+N
Sbjct: 3 ASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYNI 182
Query: 218 S 220
S
Sbjct: 183 S 185
Score = 66.1 bits (138), Expect(2) = 1e-039
Identities = 32/56 (57%), Positives = 37/56 (66%)
Frame = -2 / -1
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALA 37
SAS GV T +TP A LP ASL+VRVM+++P*W DPCGLGRAALA
Sbjct: 169 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALA 2
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 183 bits (394), Expect(2) = 1e-071
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 294 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 473
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 474 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 653
Query: 656 GK 661
G+
Sbjct: 654 GR 659
Score = 108 bits (230), Expect(2) = 1e-071
Identities = 41/69 (59%), Positives = 52/69 (75%)
Frame = +2 / +3
Query: 14 RSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPV 193
RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S++ P+TP+
Sbjct: 21 RSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPL 200
Query: 194 KLAEYFNAS 220
KLA+Y S
Sbjct: 201 KLADYLKIS 227
Score = 95.5 bits (202), Expect(2) = 1e-029
Identities = 52/121 (42%), Positives = 67/121 (55%)
Frame = -2 / -3
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
P R + G+ YSSL++ +GE T +C PRY +Q DR H+P LS AVH+LG T
Sbjct: 655 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 476
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARM 298
+V R TVS +LY A VH P +P K *PS ++ S F KT SMK S +
Sbjct: 475 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 296
Query: 297 T 295
T
Sbjct: 295 T 293
Score = 55.6 bits (115), Expect(2) = 1e-029
Identities = 30/68 (44%), Positives = 36/68 (52%)
Frame = -2 / -3
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAAL 40
L K SA+ GVSG + A L P +AS++VR + I P*W DP G GR L
Sbjct: 226 LIFK*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPL 47
Query: 39 AVRFQRKD 16
AVRF D
Sbjct: 46 AVRFHLMD 23
>gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 5', mRNA sequence
Length = 717
Score = 164 bits (353), Expect(2) = 2e-070
Identities = 60/107 (56%), Positives = 82/107 (76%)
Frame = +2 / +3
Query: 266 NTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYN 445
+++ + M V+ E+R F+E+VF+N E +I + H+DGY+FF VGM G WTPASR+ YN
Sbjct: 396 SSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYN 575
Query: 446 LLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLY 586
L D VSR T QVYP+SWTA+++TFDNAGMW++RS W RQ+LG+Q Y
Sbjct: 576 LFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTY 716
Score = 122 bits (261), Expect(2) = 2e-070
Identities = 48/72 (66%), Positives = 59/72 (81%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTASAARPNPQGSYHYG++NITRTI LA ++G++R+A NGVS V P
Sbjct: 135 NQARSIRWNLTASAARPNPQGSYHYGKVNITRTIILANSAPIINGRQRYAVNGVSFVRPS 314
Query: 185 TPVKLAEYFNAS 220
TP++LA+Y+N S
Sbjct: 315 TPMQLADYYNIS 350
Score = 92.7 bits (196), Expect(2) = 8e-037
Identities = 47/97 (48%), Positives = 55/97 (56%)
Frame = -2 / -3
Query: 585 YSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPG 406
Y C PR + D H+PALS V AVHD GYTW+V R T S+RLY AGVH+P
Sbjct: 715 YVC*PRNWRGHVSDLRFHIPALSKVKRIAVHDCGYTWVVQRETASKRLYPFLLAGVHVPF 536
Query: 405 PMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMT 295
+PT KK PS M+FS F T S K+R S T
Sbjct: 535 SIPTTKKEYPSKCHD*MVFSLF*NTISTKLRYSTFST 425
Score = 82.2 bits (173), Expect(2) = 8e-037
Identities = 38/66 (57%), Positives = 43/66 (65%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G T +TP A LP + AS++VRVML P*W DPCGLGRAALAV+F
Sbjct: 334 SASCIGVLGRTKETPFTA*RCLPLMMGAEFASIIVRVMLTLP*W*DPCGLGRAALAVKFH 155
Query: 24 RKDLHW 7
DL W
Sbjct: 154 LMDLAW 137
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 204 bits (440), Expect(2) = 1e-069
Identities = 75/129 (58%), Positives = 98/129 (75%)
Frame = +2 / +3
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R +YNL D VSR T Q
Sbjct: 234 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 413
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 414 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 593
Query: 659 KVVGLPMPP 685
K G P P
Sbjct: 594 KATGRPRLP 620
Score = 118 bits (252), Expect(2) = 3e-035
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -2
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 619 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 440
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL + AGV P PT KKA PS ++FS F T S
Sbjct: 439 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 260
Query: 324 MK 319
K
Sbjct: 259 TK 254
Score = 80.3 bits (169), Expect(2) = 1e-069
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +2 / +3
Query: 59 PQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
PQGSYHYG I ITRT KLA ++GK+R+A NGVS+V TP++LA+Y+N S
Sbjct: 3 PQGSYHYGNITITRTNKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYNIS 164
Score = 51.5 bits (106), Expect(2) = 3e-035
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = -2 / -2
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCG 58
SAS GV T +TP A LP ASL VRVM+++P*W DPCG
Sbjct: 148 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLFVRVMVMFP*W*DPCG 2
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 207 bits (446), Expect(2) = 6e-069
Identities = 79/140 (56%), Positives = 104/140 (74%)
Frame = +2 / +2
Query: 266 NTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYN 445
+++ + M V+ E+R F+E+VF+N E +I + H+DGY+FF VGM G WTPASR+ YN
Sbjct: 200 SSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYN 379
Query: 446 LLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDE 625
L D VSR T QVYP+SWTA+++TFDNAGMW++RS W RQ+LG+Q YV V SP RSLRDE
Sbjct: 380 LFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTYVRVRSPVRSLRDE 559
Query: 626 YNMPETSLRCGKVVGLPMPP 685
+N+P +L CGK G P P
Sbjct: 560 FNIPHNALLCGKARGRPRLP 619
Score = 134 bits (287), Expect(2) = 4e-038
Identities = 66/130 (50%), Positives = 79/130 (60%)
Frame = -2 / -2
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+L SSLSDR+G++TLTY C PR + D H+PALS V
Sbjct: 618 GRRGRPLAFPQRRAL*GILNSSLSDRTGDLTLTYVC*PRNWRGHVSDLRFHIPALSKVKR 439
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVHD GYTW+V R T S+RLY AGVH+P +PT KK PS M+FS F T S
Sbjct: 438 IAVHDCGYTWVVQRETASKRLYPFLLAGVHVPFSIPTTKKEYPSKCHD*MVFSLF*NTIS 259
Query: 324 MKVRNSARMT 295
K+R S T
Sbjct: 258 TKLRYSTFST 229
Score = 75.3 bits (158), Expect(2) = 6e-069
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +2 / +2
Query: 68 SYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
SYHYG++NITRTI LA ++G++R+A NGVS V P TP++LA+Y+N S
Sbjct: 2 SYHYGKVNITRTIILANSAPIINGRQRYAVNGVSFVRPSTPMQLADYYNIS 154
Score = 45.1 bits (92), Expect(2) = 4e-038
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = -2 / -2
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYD 67
SAS GV G T +TP A LP + AS++VRVML P*W D
Sbjct: 138 SASCIGVLGRTKETPFTA*RCLPLMMGAEFASIIVRVMLTLP*W*D 1
>gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_F07_A029 5', mRNA sequence
Length = 768
Score = 158 bits (340), Expect(2) = 1e-068
Identities = 59/95 (62%), Positives = 74/95 (77%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 482 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 661
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQY 568
R T QVYP+SWTAV++TFDNAGMW++RS IW RQY
Sbjct: 662 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQY 766
Score = 122 bits (261), Expect(2) = 1e-068
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 212 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 391
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 392 TPLQLADYYN 421
Score = 90.0 bits (190), Expect(2) = 3e-033
Identities = 45/88 (51%), Positives = 53/88 (60%)
Frame = -2 / -1
Query: 570 RYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTA 391
RY + + DR H+PALS V TAVHD GYTW+V R T S+RL AGVH P +PT
Sbjct: 768 RYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTT 589
Query: 390 KKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
KK PS ++FS F T S KVR S
Sbjct: 588 KKEYPSKCHDWIVFS*FWNTISTKVRYS 505
Score = 73.0 bits (153), Expect(2) = 3e-033
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -1
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 411 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 232
Query: 24 RKDLHW 7
DL W
Sbjct: 231 LMDLAW 214
>gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV133_F09 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 180 bits (388), Expect(3) = 3e-068
Identities = 70/125 (56%), Positives = 90/125 (72%)
Frame = +2 / +3
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPAS YNL D VS
Sbjct: 315 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVS 494
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QV P+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS DEY+ P
Sbjct: 495 RCTTQVXPQSWTAVLLTFDNAGMWNLRSEIWXRQYLGQQTYIXVKTLVRSXXDEYDXPHX 674
Query: 644 SLRCG 658
+L G
Sbjct: 675 ALLXG 689
Score = 107 bits (229), Expect(3) = 3e-033
Identities = 56/117 (47%), Positives = 64/117 (54%)
Frame = -2 / -3
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
P RR G YSS D + T Y C PRY + DR H+PALS V TAVHD G T
Sbjct: 688 PXRRAX*GXSYSSXXDLTRVFTXMYVC*PRYWRXHISDRRFHIPALSKVKRTAVHDCGXT 509
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
W+V R T S+RL AGVH P +PT KK PS ++FS F T S KVR S
Sbjct: 508 WVVQRETASKRL*YXXLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 338
Score = 76.7 bits (161), Expect(3) = 3e-068
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +2 / +3
Query: 62 QGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFN 214
+ SYHYG I ITRTIKLA ++GK+R+A NGVS++ P TP++LA+Y+N
Sbjct: 102 RXSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPSTPLQLADYYN 254
Score = 41.4 bits (84), Expect(3) = 3e-068
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +1
Query: 5 NQCRSFRWNLTASAARPNPQG 67
NQ WNLTA+AARPNPQG
Sbjct: 43 NQAXXIXWNLTANAARPNPQG 105
Score = 36.8 bits (74), Expect(3) = 3e-033
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP* 76
SAS GV G +TP A LP ASL+VRVM+++P*
Sbjct: 244 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP* 116
Score = 36.3 bits (73), Expect(3) = 3e-033
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 66 PCGLGRAALAVRFQRKDLHW 7
PCGLGRAALAV+F L W
Sbjct: 104 PCGLGRAALAVKFXLMXLAW 45
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 164 bits (352), Expect(3) = 8e-067
Identities = 60/104 (57%), Positives = 79/104 (75%)
Frame = +2 / -2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V +FR+FIE+VF+N E +I + H+DGY+FF GM G+W+PASR +YNL D VSR T
Sbjct: 357 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 178
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPE 607
QVYP+SWTA+++ DNAGMW+IRS +W RQYLG+Q Y+ V E
Sbjct: 177 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 46
Score = 106 bits (227), Expect(3) = 8e-067
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2 / -2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ +S RWNLTA+AARPNPQGSYHYG I +RTI LA ++GK+R+A NGVS + +
Sbjct: 639 NQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLD 460
Query: 185 TPVKLAEYF 211
TP+KLA+YF
Sbjct: 459 TPLKLADYF 433
Score = 84.5 bits (178), Expect(2) = 1e-027
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = -2 / +2
Query: 615 SDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYV 436
S S T +C P+YCL+ + D M H+PALS++ AV D GYT +V R T S RL +
Sbjct: 38 SSISAPATFM*NCCPKYCLAHIPDLMFHIPALSSITKIAVQDWGYTCVVERETASNRL*L 217
Query: 435 LRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRN 310
AG+H P +P KK *PS ++FS F T S+ N
Sbjct: 218 FLLAGLHCPPSIPATKKE*PSTCHD*IVFSLFWNTISINDLN 343
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = -2 / +2
Query: 213 LKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAV 34
LK SAS GVS +TP A P + +A ++V + P* +PCGLGRAALAV
Sbjct: 431 LK*SASFRGVSRGKKETPFTAYRCFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 610
Query: 33 RFQRKDLHWL 4
+F D WL
Sbjct: 611 KFHLMDFAWL 640
Score = 23.1 bits (44), Expect(3) = 8e-067
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2 / -2
Query: 620 DEYNMPETSLRCG 658
DEY+ P +L CG
Sbjct: 39 DEYSAPRNALMCG 1
>gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_044_G07 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 582
Score = 147 bits (316), Expect(2) = 3e-065
Identities = 55/91 (60%), Positives = 70/91 (76%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 457
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIW 556
R T QVYP+SWTAV++TFDNA MW++RS IW
Sbjct: 458 RCTTQVYPQSWTAVLLTFDNAXMWNLRSXIW 550
Score = 122 bits (261), Expect(2) = 3e-065
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 8 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 187
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 188 TPLQLADYYN 217
Score = 81.7 bits (172), Expect(2) = 9e-031
Identities = 42/84 (50%), Positives = 49/84 (58%)
Frame = -2 / -1
Query: 558 SQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA* 379
+ + DR H ALS V TAVHD GYTW+V R T S+RL AGVH P +PT KK
Sbjct: 552 AHIXDRRFHXXALSKVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEY 373
Query: 378 PSMWMVSMLFSGFSKTTSMKVRNS 307
PS ++FS F T S KVR S
Sbjct: 372 PSKCHDWIVFS*FWNTISTKVRYS 301
Score = 73.0 bits (153), Expect(2) = 9e-031
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -1
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 24 RKDLHW 7
DL W
Sbjct: 27 LMDLAW 10
>gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_058_A01 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 145 bits (311), Expect(2) = 1e-064
Identities = 56/104 (53%), Positives = 72/104 (69%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+ GY+FF VGM +WTPA YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLXGYSFFVVGMDGXEWTPAXXKYYNLFDAVS 457
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSV 595
R T Q YP+SWTAV++TFDNA MW++RS I RQYL Q Y+ V
Sbjct: 458 RCTTQXYPQSWTAVLLTFDNAXMWNLRSEIXARQYLXXQTYIKV 589
Score = 122 bits (261), Expect(2) = 1e-064
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 8 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPN 187
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 188 TPLQLADYYN 217
Score = 80.8 bits (170), Expect(2) = 2e-030
Identities = 44/96 (45%), Positives = 51/96 (53%)
Frame = -2 / -3
Query: 594 TLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVH 415
TL Y RY + + DR H ALS V TAVHD GY W+V R T S+RL AGVH
Sbjct: 588 TLMYVXXXRYWRAXISDRRFHXXALSKVKRTAVHDCGYXWVVQRETASKRL*YFXLAGVH 409
Query: 414 LPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
+PT KK P ++FS F T S KVR S
Sbjct: 408 SXPSIPTTKKEYPXKCHDWIVFS*FWNTISTKVRYS 301
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 24 RKDLHW 7
DL W
Sbjct: 27 LMDLAW 10
>gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H11 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 144 bits (308), Expect(2) = 4e-064
Identities = 56/96 (58%), Positives = 70/96 (72%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 457
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYL 571
R T QVYP+SWTAV++T DNA M +RS IW RQ L
Sbjct: 458 RCTTQVYPQSWTAVLLTXDNAXMXXLRSEIWXRQIL 565
Score = 122 bits (261), Expect(2) = 4e-064
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 8 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 187
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 188 TPLQLADYYN 217
Score = 76.2 bits (160), Expect(2) = 4e-029
Identities = 41/80 (51%), Positives = 46/80 (57%)
Frame = -2 / -3
Query: 546 DRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMW 367
DR ALS V TAVHD GYTW+V R T S+RL AGVH P +PT KK PS
Sbjct: 540 DRXXXXXALSXVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKC 361
Query: 366 MVSMLFSGFSKTTSMKVRNS 307
++FS F T S KVR S
Sbjct: 360 HDWIVFS*FWNTISTKVRYS 301
Score = 73.0 bits (153), Expect(2) = 4e-029
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 24 RKDLHW 7
DL W
Sbjct: 27 LMDLAW 10
>gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_013_H12 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 626
Score = 142 bits (304), Expect(2) = 1e-063
Identities = 56/104 (53%), Positives = 69/104 (66%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+V N E +I + H+DGY+FF VGM G+WTPAS YNL D VS
Sbjct: 308 MQTAALSVEYRTFVEIVXXNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVS 487
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSV 595
R T QVYP S T V++T DNAGMW++RS IW RQY Y V
Sbjct: 488 RXTTQVYPXSXTXVLLTXDNAGMWNLRSXIWARQYXXXXTYXKV 619
Score = 122 bits (261), Expect(2) = 1e-063
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 38 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 217
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 218 TPLQLADYYN 247
Score = 88.6 bits (187), Expect(2) = 8e-033
Identities = 45/96 (46%), Positives = 53/96 (55%)
Frame = -2 / -3
Query: 594 TLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVH 415
TL Y Y + + DR H+PALS V T VH GYTW+V R T S+RL AGVH
Sbjct: 618 TLXYVXXXXYWRAHIXDRRFHIPALSXVKRTXVHXCGYTWVVXRETASKRL*YXXLAGVH 439
Query: 414 LPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
P +PT KK PS ++FS F T S KVR S
Sbjct: 438 SPPSIPTTKKEYPSKCHDWIVFS*FXNTISTKVRYS 331
Score = 73.0 bits (153), Expect(2) = 8e-033
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 237 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 58
Query: 24 RKDLHW 7
DL W
Sbjct: 57 LMDLAW 40
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 164 bits (352), Expect(3) = 1e-061
Identities = 60/104 (57%), Positives = 79/104 (75%)
Frame = +2 / -3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V +FR+FIE+VF+N E +I + H+DGY+FF GM G+W+PASR +YNL D VSR T
Sbjct: 604 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 425
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPE 607
QVYP+SWTA+++ DNAGMW+IRS +W RQYLG+Q Y+ V E
Sbjct: 424 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 293
Score = 87.2 bits (184), Expect(3) = 1e-061
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = +2 / -3
Query: 35 TASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYF 211
TA+AARPNPQGSYHYG I +RTI LA ++GK+R+A NGVS + +TP+KLA+YF
Sbjct: 856 TANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYF 680
Score = 84.5 bits (178), Expect(2) = 2e-024
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = -2 / +3
Query: 615 SDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYV 436
S S T +C P+YCL+ + D M H+PALS++ AV D GYT +V R T S RL +
Sbjct: 285 SSISAPATFM*NCCPKYCLAHIPDLMFHIPALSSITKIAVQDWGYTCVVERETASNRL*L 464
Query: 435 LRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRN 310
AG+H P +P KK *PS ++FS F T S+ N
Sbjct: 465 FLLAGLHCPPSIPATKKE*PSTCHD*IVFSLFWNTISINDLN 590
Score = 48.7 bits (100), Expect(2) = 2e-024
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = -2 / +3
Query: 213 LKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAV 34
LK SAS GVS +TP A P + +A ++V + P* +PCGLGRAALAV
Sbjct: 678 LK*SASFRGVSRGKKETPFTAYRCFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 857
Score = 25.4 bits (49), Expect(3) = 1e-061
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2 / -3
Query: 620 DEYNMPETSLRCGKVVG 670
DEY+ P +L CG+ G
Sbjct: 286 DEYSAPRNALMCGRARG 236
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 204 bits (440), Expect(2) = 3e-061
Identities = 75/129 (58%), Positives = 98/129 (75%)
Frame = +2 / +3
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R +YNL D VSR T Q
Sbjct: 192 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 371
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 372 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 551
Query: 659 KVVGLPMPP 685
K G P P
Sbjct: 552 KATGRPRLP 578
Score = 118 bits (252), Expect(2) = 3e-027
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 577 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 398
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL + AGV P PT KKA PS ++FS F T S
Sbjct: 397 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 218
Query: 324 MK 319
K
Sbjct: 217 TK 212
Score = 52.4 bits (108), Expect(2) = 3e-061
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2 / +3
Query: 101 TIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
TIKLA ++GK+R+A NGVS+V TP++LA+Y+N S
Sbjct: 3 TIKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYNIS 122
Score = 24.4 bits (47), Expect(2) = 3e-027
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2 / -1
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMV 100
SAS GV T +TP A LP ASL+V
Sbjct: 106 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIV 2
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 183 bits (394), Expect(2) = 4e-061
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 236 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 415
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 416 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 595
Query: 656 GK 661
G+
Sbjct: 596 GR 601
Score = 95.5 bits (202), Expect(2) = 2e-024
Identities = 52/121 (42%), Positives = 67/121 (55%)
Frame = -2 / -1
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
P R + G+ YSSL++ +GE T +C PRY +Q DR H+P LS AVH+LG T
Sbjct: 597 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 418
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARM 298
+V R TVS +LY A VH P +P K *PS ++ S F KT SMK S +
Sbjct: 417 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 238
Query: 297 T 295
T
Sbjct: 237 T 235
Score = 73.0 bits (153), Expect(2) = 4e-061
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +2 / +2
Query: 65 GSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
GSYHYG IN +RTI LA ++GK+R+A N +S++ P+TP+KLA+Y S
Sbjct: 14 GSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADYLKIS 169
Score = 38.2 bits (77), Expect(2) = 2e-024
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = -2 / -1
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDP 64
L K SA+ GVSG + A L P +AS++VR + I P*W DP
Sbjct: 168 LIFK*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP 13
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 154 bits (331), Expect(3) = 5e-060
Identities = 58/103 (56%), Positives = 75/103 (72%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 489 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 668
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISP 604
QVYP SWTA+ + DN G W++RS W RQYLG+Q Y+ V SP
Sbjct: 669 QVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSP 797
Score = 80.8 bits (170), Expect(2) = 1e-021
Identities = 45/104 (43%), Positives = 55/104 (52%)
Frame = -2 / -3
Query: 606 SGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRD 427
+GE T +C PRY +Q DR H P LS AVH+LG T +V R TVS +LY
Sbjct: 799 AGE*TRR*NCCPRY*RAQFSDRKFHFPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFML 620
Query: 426 AGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMT 295
A VH P +P K *PS ++ S F KT SMK S +T
Sbjct: 619 ASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPIT 488
Score = 75.8 bits (159), Expect(3) = 5e-060
Identities = 30/46 (65%), Positives = 34/46 (73%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGK 142
NQ RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++G+
Sbjct: 206 NQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGE 343
Score = 46.4 bits (95), Expect(2) = 1e-021
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -2 / -1
Query: 117 MASLMVRVMLIWP*WYDPCGLGRAALAVRFQRKDLHW 7
+AS++VR + I P*W DP G GR LAVRF D W
Sbjct: 318 LASIIVREVFIIP*W*DP*GFGRGPLAVRFHLMDRAW 208
Score = 40.9 bits (83), Expect(3) = 5e-060
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2 / +3
Query: 140 KERFAFNGVSHVDPETPVKLAEYFNAS 220
K+R+A N +S++ P+TP+KLA+Y S
Sbjct: 342 KQRYAVNSISYIQPDTPLKLADYLKIS 422
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 183 bits (394), Expect(2) = 9e-060
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 217 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 396
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 397 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 576
Query: 656 GK 661
G+
Sbjct: 577 GR 582
Score = 95.5 bits (202), Expect(2) = 3e-023
Identities = 52/121 (42%), Positives = 67/121 (55%)
Frame = -2 / -2
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
P R + G+ YSSL++ +GE T +C PRY +Q DR H+P LS AVH+LG T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARM 298
+V R TVS +LY A VH P +P K *PS ++ S F KT SMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 297 T 295
T
Sbjct: 218 T 216
Score = 68.4 bits (143), Expect(2) = 9e-060
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +2 / +1
Query: 71 YHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
YHYG IN +RTI LA ++GK+R+A N +S++ P+TP+KLA+Y S
Sbjct: 1 YHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADYLKIS 150
Score = 34.1 bits (68), Expect(2) = 3e-023
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2 / -2
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*W 73
L K SA+ GVSG + A L P +AS++VR + I P*W
Sbjct: 149 LIFK*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W 3
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 183 bits (394), Expect(2) = 9e-060
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 217 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 396
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 397 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 576
Query: 656 GK 661
G+
Sbjct: 577 GR 582
Score = 95.5 bits (202), Expect(2) = 3e-023
Identities = 52/121 (42%), Positives = 67/121 (55%)
Frame = -2 / -2
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
P R + G+ YSSL++ +GE T +C PRY +Q DR H+P LS AVH+LG T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARM 298
+V R TVS +LY A VH P +P K *PS ++ S F KT SMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 297 T 295
T
Sbjct: 218 T 216
Score = 68.4 bits (143), Expect(2) = 9e-060
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +2 / +1
Query: 71 YHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
YHYG IN +RTI LA ++GK+R+A N +S++ P+TP+KLA+Y S
Sbjct: 1 YHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADYLKIS 150
Score = 34.1 bits (68), Expect(2) = 3e-023
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2 / -2
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*W 73
L K SA+ GVSG + A L P +AS++VR + I P*W
Sbjct: 149 LIFK*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W 3
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 204 bits (440), Expect(2) = 1e-059
Identities = 80/143 (55%), Positives = 102/143 (71%)
Frame = +2 / +3
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 150 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 329
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 330 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 509
Query: 644 SLRCGKVVGLPMPPSYLSV*SMH 712
+L CGK G P P S+H
Sbjct: 510 ALLCGKARGRPRLPQ*AFTVSLH 578
Score = 127 bits (271), Expect = 2e-028
Identities = 63/126 (50%), Positives = 75/126 (59%)
Frame = -2 / -3
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D + TL Y C PRY + + DR H+PALS V
Sbjct: 550 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 371
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
TAVHD GYTW+V R T S+RL AGVH P +PT KK PS ++FS F T S
Sbjct: 370 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 191
Query: 324 MKVRNS 307
KVR S
Sbjct: 190 TKVRYS 173
Score = 46.9 bits (96), Expect(2) = 1e-059
Identities = 15/28 (53%), Positives = 25/28 (89%)
Frame = +2 / +3
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYFN 214
++GK+R+A NGVS++ P TP++LA+Y+N
Sbjct: 6 INGKQRYAVNGVSYLRPSTPLQLADYYN 89
>gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 5', mRNA sequence
Length = 703
Score = 134 bits (287), Expect(2) = 4e-058
Identities = 50/89 (56%), Positives = 65/89 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 436 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 615
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWER 562
QVYP SWTA+ + DN GMW++RS W R
Sbjct: 616 QVYPNSWTAIRVPLDNVGMWNLRSENWAR 702
Score = 111 bits (238), Expect(2) = 4e-058
Identities = 43/72 (59%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S + P+
Sbjct: 154 NQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISFIQPD 333
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y S
Sbjct: 334 TPLKLADYLKIS 369
Score = 64.8 bits (135), Expect(2) = 1e-021
Identities = 37/88 (42%), Positives = 46/88 (52%)
Frame = -2 / -3
Query: 558 SQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA* 379
+Q DR H+P LS AV +LG T +V R TVS +LY A VH P +P K *
Sbjct: 698 AQFSDRKFHIPTLSRGTRIAVQELG*TCVVQRETVSNKLYSFMLASVHWPPSIPRTKNE* 519
Query: 378 PSMWMVSMLFSGFSKTTSMKVRNSARMT 295
PS ++ S F KT SMK S +T
Sbjct: 518 PSRCHDWIVSSLFWKTISMKALKSEPIT 435
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 31/71 (43%), Positives = 37/71 (52%)
Frame = -2 / -3
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAAL 40
L K SA+ GVSG + A L P +AS++VR + I P*W DP G GR L
Sbjct: 368 LIFK*SANFKGVSGCIKEILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPL 189
Query: 39 AVRFQRKDLHW 7
AVRF D W
Sbjct: 188 AVRFHLMDRAW 156
>gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 5', mRNA sequence
Length = 714
Score = 127 bits (271), Expect(2) = 2e-056
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 465 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 644
Query: 476 QVYPRSWTAVMMTFDNAGMWSIR 544
QVYP SWTA+ + DN GMW++R
Sbjct: 645 QVYPNSWTAIRVPLDNVGMWNLR 713
Score = 113 bits (241), Expect(2) = 2e-056
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S++ P+
Sbjct: 183 NQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPD 362
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y S
Sbjct: 363 TPLKLADYLKIS 398
Score = 63.8 bits (133), Expect(2) = 3e-021
Identities = 36/83 (43%), Positives = 44/83 (53%)
Frame = -2 / -3
Query: 543 RMLHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWM 364
R H+P LS AVH+LG T +V R TVS +LY A VH P +P K *PS
Sbjct: 712 RKFHIPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCH 533
Query: 363 VSMLFSGFSKTTSMKVRNSARMT 295
++ S F KT SMK S +T
Sbjct: 532 DWIVSSLFWKTISMKALKSEPIT 464
Score = 58.8 bits (122), Expect(2) = 3e-021
Identities = 31/71 (43%), Positives = 37/71 (52%)
Frame = -2 / -3
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAAL 40
L K SA+ GVSG + A L P +AS++VR + I P*W DP G GR L
Sbjct: 397 LIFK*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPL 218
Query: 39 AVRFQRKDLHW 7
AVRF D W
Sbjct: 217 AVRFHLMDRAW 185
>gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 183 bits (395), Expect(2) = 2e-055
Identities = 70/116 (60%), Positives = 89/116 (76%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 176 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 355
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYN 631
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY+
Sbjct: 356 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 523
Score = 111 bits (236), Expect(2) = 2e-025
Identities = 55/107 (51%), Positives = 65/107 (60%)
Frame = -2 / -3
Query: 627 YSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLTVSR 448
YSSL+D + TL Y C PRY + + DR H+PALS V TAVHD GYTW+V R T S+
Sbjct: 519 YSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRETASK 340
Query: 447 RLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
RL AGVH P +PT KK PS ++FS F T S KVR S
Sbjct: 339 RL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 199
Score = 53.8 bits (111), Expect(2) = 2e-055
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +2 / +2
Query: 101 TIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYFN 214
TIKLA ++GK+R+A NGVS++ P TP++LA+Y+N
Sbjct: 2 TIKLANSAPVINGKQRYAVNGVSYLRPSTPLQLADYYN 115
Score = 25.4 bits (49), Expect(2) = 2e-025
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMV 100
SAS GV G +TP A LP ASL+V
Sbjct: 105 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIV 1
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA
sequence
Length = 732
Score = 201 bits (434), Expect(2) = 5e-055
Identities = 80/143 (55%), Positives = 101/143 (70%)
Frame = +2 / -2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 611 MQTAALSVEYRTFVEIVFQNYENTIQSWHSDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 432
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 431 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 252
Query: 644 SLRCGKVVGLPMPPSYLSV*SMH 712
+L CGK G P P S+H
Sbjct: 251 ALLCGKARGRPRLPQ*AFPASLH 183
Score = 126 bits (270), Expect = 3e-028
Identities = 63/126 (50%), Positives = 75/126 (59%)
Frame = -2 / +1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D + TL Y C PRY + + DR H+PALS V
Sbjct: 211 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 390
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
TAVHD GYTW+V R T S+RL AGVH P +PT KK PS ++FS F T S
Sbjct: 391 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSECHDWIVFS*FWNTIS 570
Query: 324 MKVRNS 307
KVR S
Sbjct: 571 TKVRYS 588
Score = 34.1 bits (68), Expect(2) = 5e-055
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2 / -2
Query: 158 NGVSHVDPETPVKLAEYFN 214
NGVS++ P TP++LA+Y+N
Sbjct: 728 NGVSYLRPSTPLQLADYYN 672
>gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_D04 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 122 bits (261), Expect(2) = 1e-054
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 27 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 206
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 207 TPLQLADYYN 236
Score = 112 bits (239), Expect(2) = 1e-054
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / +3
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+ Y+FF VGM G+WTPASR YNL D VS
Sbjct: 297 MQTAALSVEYRTFVEIVFQNYENTIQSWHLXXYSFFVVGMDGGEWTPASRKYYNLFDAVS 476
Query: 464 RHTIQVYPRSWTAVMMT 514
R T QVYP+SWTAV++T
Sbjct: 477 RCTTQVYPQSWTAVLLT 527
Score = 73.0 bits (153), Expect(2) = 5e-026
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -2
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 226 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 47
Query: 24 RKDLHW 7
DL W
Sbjct: 46 LMDLAW 29
Score = 65.7 bits (137), Expect(2) = 5e-026
Identities = 34/66 (51%), Positives = 39/66 (59%)
Frame = -2 / -2
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
TAVHD GYTW+V R T S+RL AGVH P +PT KK S ++FS F T S
Sbjct: 517 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYXSKCHDWIVFS*FWNTIS 338
Query: 324 MKVRNS 307
KVR S
Sbjct: 337 TKVRYS 320
>gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA51 3' end, mRNA sequence
Length = 944
Score = 116 bits (248), Expect(4) = 7e-054
Identities = 45/73 (61%), Positives = 56/73 (76%)
Frame = +2 / +1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA AARPNPQGS+HYG IN++RTI+L + GK+RFA N VS + P+
Sbjct: 340 NQARSIRWNLTAGAARPNPQGSFHYGNINVSRTIQLQSTAPIIGGKQRFAVNNVSFIYPD 519
Query: 185 TPVKLAEYFNASD 223
TP+KLA+YF +D
Sbjct: 520 TPLKLADYFQIND 558
Score = 87.2 bits (184), Expect(4) = 7e-054
Identities = 36/73 (49%), Positives = 46/73 (63%)
Frame = +2 / +1
Query: 260 PSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRST 439
PS +P + VI A + FIE++F+N E +I T H+DGYAFF VGM G W +ST
Sbjct: 589 PSVVSPPRYGTPVIDAINKAFIEIIFQNTENAIQTWHVDGYAFFVVGMDSGVWDSTKQST 768
Query: 440 YNLLDTVSRHTIQ 478
YNL D V+R T Q
Sbjct: 769 YNLNDAVARPTTQ 807
Score = 42.8 bits (87), Expect(4) = 7e-054
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2 / +3
Query: 479 VYPRSWTAVMMTFDNAGMWSI 541
VYP SWTAV+M DN GMW++
Sbjct: 807 VYPYSWTAVLMELDNVGMWNL 869
Score = 22.1 bits (42), Expect(4) = 7e-054
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 560 RQYLGEQLYVSV 595
R+YLG++LY+ V
Sbjct: 887 RRYLGQELYMRV 922
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 185 bits (398), Expect(2) = 7e-054
Identities = 70/121 (57%), Positives = 91/121 (75%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 158 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 337
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+ Y+ V + RS RDEY++P
Sbjct: 338 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKVKTLVRSARDEYDIPHN 517
Query: 644 S 646
+
Sbjct: 518 A 520
Score = 108 bits (230), Expect = 9e-023
Identities = 55/110 (50%), Positives = 66/110 (60%)
Frame = -2 / -3
Query: 636 GMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYTWIVCRLT 457
G+ YSSL+D + TL Y PRY + + DR H+PALS V TAVHD GYTW+V R T
Sbjct: 510 GISYSSLADLTRVFTLMYVX*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRET 331
Query: 456 VSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
S+RL AGVH P +PT KK PS ++FS F T S KVR S
Sbjct: 330 ASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 181
Score = 46.9 bits (96), Expect(2) = 7e-054
Identities = 15/28 (53%), Positives = 25/28 (89%)
Frame = +2 / +2
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYFN 214
++GK+R+A NGVS++ P TP++LA+Y+N
Sbjct: 14 INGKQRYAVNGVSYLRPSTPLQLADYYN 97
>gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 5', mRNA sequence
Length = 514
Score = 127 bits (271), Expect(2) = 1e-053
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +2 / +2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 266 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 445
Query: 476 QVYPRSWTAVMMTFDNAGMWSIR 544
QVYP SWTA+ + DN GMW++R
Sbjct: 446 QVYPNSWTAIRVPLDNVGMWNLR 514
Score = 104 bits (221), Expect(2) = 1e-053
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +2 / +2
Query: 23 RWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLA 202
RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S++ P+TP+KLA
Sbjct: 2 RWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLA 181
Query: 203 EYFNAS 220
+Y S
Sbjct: 182 DYLKIS 199
>gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clone RN06E03 similar to
PECTINESTERASE, mRNA sequence
Length = 670
Score = 116 bits (247), Expect(2) = 2e-053
Identities = 44/78 (56%), Positives = 57/78 (73%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 435 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTQASMKEYNLFDTVSRCTT 614
Query: 476 QVYPRSWTAVMMTFDNAG 529
QVYP SWTA+ + DN G
Sbjct: 615 QVYPNSWTAIRVPLDNVG 668
Score = 114 bits (244), Expect(2) = 2e-053
Identities = 44/72 (61%), Positives = 54/72 (75%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S + P+
Sbjct: 153 NQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISFIQPD 332
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y N S
Sbjct: 333 TPLKLADYLNIS 368
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 182 bits (393), Expect(2) = 2e-052
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 166 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 345
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 346 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKC 525
Query: 656 GK 661
G+
Sbjct: 526 GR 531
Score = 44.1 bits (90), Expect(2) = 2e-052
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2 / +1
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYFNAS 220
++GK+R+A N +S + P+TP+KLA+Y S
Sbjct: 10 INGKQRYAVNSISFIQPDTPLKLADYLKIS 99
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 204 bits (440), Expect = 1e-051
Identities = 80/143 (55%), Positives = 102/143 (71%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 35 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 214
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 215 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 394
Query: 644 SLRCGKVVGLPMPPSYLSV*SMH 712
+L CGK G P P S+H
Sbjct: 395 ALLCGKARGRPRLPQ*AFTVSLH 463
Score = 127 bits (271), Expect = 2e-028
Identities = 63/126 (50%), Positives = 75/126 (59%)
Frame = -2 / -2
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D + TL Y C PRY + + DR H+PALS V
Sbjct: 435 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 256
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
TAVHD GYTW+V R T S+RL AGVH P +PT KK PS ++FS F T S
Sbjct: 255 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 76
Query: 324 MKVRNS 307
KVR S
Sbjct: 75 TKVRYS 58
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 204 bits (439), Expect = 1e-051
Identities = 76/129 (58%), Positives = 97/129 (75%)
Frame = +2 / +3
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R FIE+VF+N E +I + H+DGY+FF VGM G WTPA+R +YNL D VSR T Q
Sbjct: 30 LNVEYRAFIEIVFQNYENTIQSWHLDGYSFFVVGMDGGDWTPANRKSYNLFDAVSRCTTQ 209
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+ +TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 210 VYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 389
Query: 659 KVVGLPMPP 685
K G P P
Sbjct: 390 KATGRPRLP 416
Score = 119 bits (255), Expect = 3e-026
Identities = 59/122 (48%), Positives = 72/122 (59%)
Frame = -2 / -2
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 415 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKK 236
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL + AGV P +PT KK PS ++FS F T S
Sbjct: 235 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSIPTTKKEYPSKCQDWIVFS*FWNTIS 56
Query: 324 MK 319
MK
Sbjct: 55 MK 50
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA
sequence
Length = 630
Score = 202 bits (436), Expect = 4e-051
Identities = 79/135 (58%), Positives = 100/135 (74%)
Frame = +2 / +1
Query: 308 EFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQVYP 487
E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VSR T QVYP
Sbjct: 4 EYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQVYP 183
Query: 488 RSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVV 667
+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P +L CGK
Sbjct: 184 QSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCGKAR 363
Query: 668 GLPMPPSYLSV*SMH 712
G P P S+H
Sbjct: 364 GRPRLPQ*AFPASLH 408
Score = 127 bits (271), Expect = 2e-028
Identities = 63/126 (50%), Positives = 75/126 (59%)
Frame = -2 / -2
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D + TL Y C PRY + + DR H+PALS V
Sbjct: 380 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 201
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
TAVHD GYTW+V R T S+RL AGVH P +PT KK PS ++FS F T S
Sbjct: 200 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 21
Query: 324 MKVRNS 307
KVR S
Sbjct: 20 TKVRYS 3
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 202 bits (435), Expect = 5e-051
Identities = 75/133 (56%), Positives = 98/133 (73%)
Frame = +2 / +1
Query: 299 IRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQ 478
+ E+R F+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R YNL D VSR T Q
Sbjct: 22 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQ 201
Query: 479 VYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 658
VYP SWTA+++TFDNAG+W++RS WER +LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 202 VYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 381
Query: 659 KVVGLPMPPSYLS 697
K G P P +S
Sbjct: 382 KATGRPRLPQ*VS 420
Score = 116 bits (249), Expect = 2e-025
Identities = 59/122 (48%), Positives = 70/122 (57%)
Frame = -2 / -3
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 407 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRKCRSHVCDLRFHSPALSKVKR 228
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL AGV P PT KKA PS ++FS F T S
Sbjct: 227 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTIS 48
Query: 324 MK 319
K
Sbjct: 47 TK 42
>gb|BI397653.1|BI397653 NXPV_102_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_102_H10 5' similar to Arabidopsis
thaliana sequence At4g22010 pectinesterase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 490
Score = 122 bits (260), Expect(2) = 5e-051
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 8 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPX 187
Query: 185 TPVKLAEYFN 214
TP++LA+Y+N
Sbjct: 188 TPLQLADYYN 217
Score = 100 bits (213), Expect(2) = 5e-051
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+ F VGM G+WTPASR YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSXFVVGMDGGEWTPASRKYYNLFDAVS 457
Query: 464 RHTIQVYPRSW 496
R T YP+SW
Sbjct: 458 RCTTXXYPQSW 490
Score = 73.9 bits (155), Expect(2) = 3e-024
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = -2 / -2
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SAS GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 207 SASCNGVXGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 24 RKDLHW 7
DL W
Sbjct: 27 LMDLAW 10
Score = 58.8 bits (122), Expect(2) = 3e-024
Identities = 30/63 (47%), Positives = 35/63 (55%)
Frame = -2 / -2
Query: 495 HDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKV 316
HD GY W+V R T S+RL AGVH P +PT K PS ++FS F T S KV
Sbjct: 489 HDCGYXWVVQRETASKRL*YFLLAGVHSPPSIPTTKXEYPSKCHDWIVFS*FWNTISTKV 310
Query: 315 RNS 307
R S
Sbjct: 309 RYS 301
>gb|BI397648.1|BI397648 NXPV_102_G12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_102_G12 5' similar to Arabidopsis
thaliana sequence At4g22010 pectinesterase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 121 bits (259), Expect(2) = 5e-051
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTA+AARPNPQGSYHYG I ITRTIKLA ++GK+R+A NGVS++ P
Sbjct: 8 NQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPS 187
Query: 185 TPVKLAEYFN 214
TP+ LA+Y+N
Sbjct: 188 TPLHLADYYN 217
Score = 100 bits (214), Expect(2) = 5e-051
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPAS YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXXYYNLFDAVS 457
Query: 464 RHTIQVYPRS 493
R T QVYP+S
Sbjct: 458 RCTTQVYPQS 487
Score = 70.7 bits (148), Expect(3) = 7e-021
Identities = 35/66 (53%), Positives = 41/66 (62%)
Frame = -2 / -3
Query: 204 SASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQ 25
SA GV G +TP A LP ASL+VRVM+++P* DPCGLGRAALAV+F
Sbjct: 207 SARCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 24 RKDLHW 7
DL W
Sbjct: 27 LMDLAW 10
Score = 37.7 bits (76), Expect(3) = 7e-021
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = -2 / -3
Query: 426 AGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
AGVH P +PT KK PS ++FS F T S KVR S
Sbjct: 420 AGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 301
Score = 30.4 bits (60), Expect(3) = 7e-021
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 492 DLGYTWIVCRLTVSRRL 442
D GYTW+V R T S+RL
Sbjct: 486 DCGYTWVVQRETASKRL 436
>gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_B03_A029 3', mRNA sequence
Length = 765
Score = 113 bits (241), Expect(2) = 2e-050
Identities = 41/72 (56%), Positives = 56/72 (77%)
Frame = +2 / -3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V +FR+FIE+VF+N E +I + H+DGY+FF GM G+W+PASR +YNL D VSR T
Sbjct: 223 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 44
Query: 476 QVYPRSWTAVMM 511
QVYP+SWTA+++
Sbjct: 43 QVYPQSWTAILV 8
Score = 106 bits (227), Expect(2) = 2e-050
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2 / -3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ +S RWNLTA+AARPNPQGSYHYG I +RTI LA ++GK+R+A NGVS + +
Sbjct: 505 NQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLD 326
Query: 185 TPVKLAEYF 211
TP+KLA+YF
Sbjct: 325 TPLKLADYF 299
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 198 bits (426), Expect = 9e-050
Identities = 75/126 (59%), Positives = 96/126 (76%)
Frame = +2 / +2
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 53 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 232
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 233 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 412
Query: 644 SLRCGK 661
+L CGK
Sbjct: 413 ALLCGK 430
Score = 122 bits (261), Expect = 5e-027
Identities = 61/122 (50%), Positives = 73/122 (59%)
Frame = -2 / -2
Query: 672 SPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVH 493
S PQRR + G+ YSSL+D + TL Y C PRY + + DR H+PALS V TAVH
Sbjct: 441 SALAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVH 262
Query: 492 DLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVR 313
D GYTW+V R T S+RL AGVH P +PT KK PS ++FS F T S KVR
Sbjct: 261 DCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVR 82
Query: 312 NS 307
S
Sbjct: 81 YS 76
>gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_E04_A029 5', mRNA sequence
Length = 750
Score = 113 bits (241), Expect(2) = 9e-050
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG IN +RTI LA ++GK+R+A N +S++ P+
Sbjct: 246 NQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPD 425
Query: 185 TPVKLAEYFNAS 220
TP+KLA+Y S
Sbjct: 426 TPLKLADYLKIS 461
Score = 105 bits (223), Expect(2) = 9e-050
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF + M G+WT AS YNL DTVSR T
Sbjct: 528 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLXMDGGQWTEASMKEYNLFDTVSRCTT 707
Query: 476 QVYPRSWTAV 505
QVYP SWTA+
Sbjct: 708 QVYPNSWTAI 737
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 478
Score = 196 bits (422), Expect = 3e-049
Identities = 74/126 (58%), Positives = 95/126 (75%)
Frame = +2 / +3
Query: 284 MAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVS 463
M + E+RTF+E+VF+N E +I + H+DGY+FF VGM G+WTPASR YNL D VS
Sbjct: 27 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 206
Query: 464 RHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 643
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + R RDEY++P
Sbjct: 207 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRXARDEYDIPHN 386
Query: 644 SLRCGK 661
+L CGK
Sbjct: 387 ALLCGK 404
Score = 118 bits (252), Expect = 9e-026
Identities = 59/117 (50%), Positives = 71/117 (60%)
Frame = -2 / -1
Query: 657 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVIITAVHDLGYT 478
PQRR + G+ YSSL+ + TL Y C PRY + + DR H+PALS V TAVHD GYT
Sbjct: 400 PQRRAL*GISYSSLAXLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 221
Query: 477 WIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNS 307
W+V R T S+RL AGVH P +PT KK PS ++FS F T S KVR S
Sbjct: 220 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 50
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 194 bits (419), Expect = 8e-049
Identities = 73/125 (58%), Positives = 94/125 (75%)
Frame = +2 / +2
Query: 323 IEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTA 502
+E+VF+N E +I + H+DGYAFF VG+ G WTPA+R YNL D VSR T QVYP SWTA
Sbjct: 2 VEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQVYPNSWTA 181
Query: 503 VMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMP 682
+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CGK G P
Sbjct: 182 ILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRL 361
Query: 683 PSYLS 697
P +S
Sbjct: 362 PQ*VS 376
Score = 115 bits (245), Expect = 8e-025
Identities = 58/120 (48%), Positives = 69/120 (57%)
Frame = -2 / -3
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G G P PQRR + G+ YSSL+D +G+ TLTY C PR C S + D H PALS V
Sbjct: 363 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 184
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVH+ GYT +V R T S+RL AGV P PT KKA PS ++FS F T S
Sbjct: 183 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTIS 4
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 164 bits (352), Expect(3) = 2e-048
Identities = 60/104 (57%), Positives = 79/104 (75%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V +FR+FIE+VF+N E +I + H+DGY+FF GM G+W+PASR +YNL D VSR T
Sbjct: 166 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 345
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPE 607
QVYP+SWTA+++ DNAGMW+IRS +W RQYLG+Q Y+ V E
Sbjct: 346 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 477
Score = 42.8 bits (87), Expect(3) = 2e-048
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +2 / +1
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYF 211
++GK+R+A NGVS + +TP+KLA+YF
Sbjct: 10 INGKQRYAVNGVSFLPLDTPLKLADYF 90
Score = 25.4 bits (49), Expect(3) = 2e-048
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2 / +1
Query: 620 DEYNMPETSLRCGKVVG 670
DEY+ P +L CG+ G
Sbjct: 484 DEYSAPRNALMCGRARG 534
>gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 3', mRNA sequence
Length = 730
Score = 183 bits (394), Expect(2) = 5e-047
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 115 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 294
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 295 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 474
Query: 656 GK 661
G+
Sbjct: 475 GR 480
Score = 25.8 bits (50), Expect(2) = 5e-047
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 173 VDPETPVKLAEYFNAS 220
+ P+TP+KLA+Y S
Sbjct: 1 IQPDTPLKLADYLKIS 48
>gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5', mRNA sequence
Length = 504
Score = 183 bits (394), Expect = 2e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 656 GK 661
G+
Sbjct: 380 GR 385
>gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5' similar to Arabidopsis thaliana sequence
At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 183 bits (394), Expect = 2e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 656 GK 661
G+
Sbjct: 380 GR 385
>gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 3', mRNA sequence
Length = 696
Score = 183 bits (394), Expect = 2e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 85 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 264
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 265 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 444
Query: 656 GK 661
G+
Sbjct: 445 GR 450
>gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 3', mRNA sequence
Length = 664
Score = 183 bits (394), Expect = 2e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 46 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 225
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 226 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 405
Query: 656 GK 661
G+
Sbjct: 406 GR 411
>gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 5', mRNA sequence
Length = 655
Score = 183 bits (394), Expect = 2e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 13 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 192
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 193 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 372
Query: 656 GK 661
G+
Sbjct: 373 GR 378
>gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F03_A029 3', mRNA sequence
Length = 703
Score = 182 bits (393), Expect = 3e-045
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+ ++FR FIE+VF+N E +I + H+DGY+FF +GM G+WT AS YNL DTVSR T
Sbjct: 88 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 267
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 268 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKC 447
Query: 656 GK 661
G+
Sbjct: 448 GR 453
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 508,372,701
Number of Sequences: 355925
Number of extensions: 6854117
Number of successful extensions: 49130
Number of sequences better than 1.0e-020: 121
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18425231680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)