TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 365 e-100
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 361 5e-099
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 350 1e-095
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 350 1e-095
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 340 1e-092
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 312 3e-084
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 295 4e-079
gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus ad... 255 5e-067
gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus... 254 9e-067
gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stresse... 242 4e-063
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 167 2e-062
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 238 6e-062
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 213 1e-058
gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus adde... 226 2e-058
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 204 5e-058
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 217 1e-055
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 215 7e-055
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 203 2e-051
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 199 3e-050
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 199 3e-050
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 198 6e-050
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 198 8e-050
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 198 8e-050
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 128 6e-048
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 191 1e-047
dbj|BD236521.1| Materials and method for modification of pl... 190 2e-047
gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus ad... 186 3e-046
gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus... 116 1e-045
gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus... 116 2e-042
gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control P... 170 2e-041
gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciat... 73 1e-031
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 68 4e-030
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 68 4e-030
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 66 2e-029
gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nit... 128 8e-029
gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from lobl... 116 2e-025
gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stresse... 64 2e-025
gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nit... 68 1e-023
gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library P... 110 2e-023
gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus... 104 2e-021
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 365 bits (792), Expect = e-100
Identities = 143/185 (77%), Positives = 162/185 (87%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 147 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 326
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAF 362
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AF
Sbjct: 327 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAF 506
Query: 363 EKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
EKASGK IPL F RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWNWA +NP+GY
Sbjct: 507 EKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWNWARQNPWGY 686
Query: 543 GSPDS 557
P+S
Sbjct: 687 ILPES 701
Score = 230 bits (496), Expect = 2e-059
Identities = 116/184 (63%), Positives = 127/184 (69%)
Frame = -2 / -1
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 697 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 518
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 517 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 338
Query: 193 *SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*I 14
*S P T G LPTATC G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS *I
Sbjct: 337 *SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*I 158
Query: 13 SRQI 2
SR I
Sbjct: 157 SRAI 146
Score = 138 bits (297), Expect = 5e-032
Identities = 61/189 (32%), Positives = 111/189 (58%)
Frame = -1 / -3
Query: 578 LVTILLDRVR*SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFT 399
L+ I + +R ++ VL+ P+PL++ H F +F P + + I+W P+T
Sbjct: 722 LMYISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWT 543
Query: 398 KNQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKVNHMDVIS 219
+ QR L LLKC ++ ++R T+S + ++ T Y K LL+ N+++S+V HM+VIS
Sbjct: 542 ELQRNALS*CLLKCSHHFKNRGTTSSA*IISCTAYVTCFK*LLKRRNVTISQVYHMNVIS 363
Query: 218 DPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIEVPK*NDL 39
+ + C ++I+ Q W P++ +LL+ H+++ NS W+ ++T +S+NW+EVP+ N
Sbjct: 362 NRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQQNYS 183
Query: 38 PFRI*TVDI 12
P I ++I
Sbjct: 182 PIWICLINI 156
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 361 bits (783), Expect = 5e-099
Identities = 141/183 (77%), Positives = 160/183 (87%)
Frame = +3 / -2
Query: 9 RDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGN 188
RDIY++DP+W+II LRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V GN
Sbjct: 742 RDIYKADPDWRIIXLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGN 563
Query: 189 DYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEK 368
DY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AFEK
Sbjct: 562 DYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEK 383
Query: 369 ASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGS 548
ASGK IPL F RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWNWA +NP+GY
Sbjct: 382 ASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWNWARQNPWGYIL 203
Query: 549 PDS 557
P+S
Sbjct: 202 PES 194
Score = 225 bits (485), Expect = 6e-058
Identities = 113/182 (62%), Positives = 125/182 (68%)
Frame = -2 / +3
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 198 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 377
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 378 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 557
Query: 193 *SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*I 14
*S P T G LPTATC G+RL GIP GSSP +PLG*APTGLKYL ++I SGS *I
Sbjct: 558 *SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLXQIILQSGSAL*I 737
Query: 13 SR 8
SR
Sbjct: 738 SR 743
Score = 138 bits (297), Expect = 5e-032
Identities = 61/189 (32%), Positives = 111/189 (58%)
Frame = -1 / +2
Query: 578 LVTILLDRVR*SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFT 399
L+ I + +R ++ VL+ P+PL++ H F +F P + + I+W P+T
Sbjct: 173 LMYISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWT 352
Query: 398 KNQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKVNHMDVIS 219
+ QR L LLKC ++ ++R T+S + ++ T Y K LL+ N+++S+V HM+VIS
Sbjct: 353 ELQRNALS*CLLKCSHHFKNRGTTSSA*IISCTAYVTCFK*LLKRRNVTISQVYHMNVIS 532
Query: 218 DPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIEVPK*NDL 39
+ + C ++I+ Q W P++ +LL+ H+++ NS W+ ++T +S+NW+EVP+ N
Sbjct: 533 NRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQXNYS 712
Query: 38 PFRI*TVDI 12
P I ++I
Sbjct: 713 PIWICLINI 739
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 350 bits (758), Expect = 1e-095
Identities = 137/176 (77%), Positives = 155/176 (88%)
Frame = +3 / +2
Query: 30 PEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDG 209
P+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V GNDY T+DG
Sbjct: 2 PDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDG 181
Query: 210 TGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIP 389
T VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AFEKASGK IP
Sbjct: 182 TAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIP 361
Query: 390 LIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L F RRPGDA +++ T KAEREL+WKAKYGIEEMCRDQWNWA +NP+GY P+S
Sbjct: 362 LKFCPRRPGDATAVYASTEKAERELDWKAKYGIEEMCRDQWNWARQNPWGYILPES 529
Score = 221 bits (477), Expect = 8e-057
Identities = 110/175 (62%), Positives = 121/175 (69%)
Frame = -2 / -3
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL +RG+ FP
Sbjct: 525 SGRM*PHGFCLAQFH*SLHISSIPYLAFQSNSRSAFSVEA*TAVASPGRLGQNLRGMLFP 346
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 345 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 166
Query: 193 *SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSG 29
*S P T G LPTATC G+RL GIP GSSP PLG*APTGLKYLSK+I SG
Sbjct: 165 *SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPICPLG*APTGLKYLSKIILQSG 1
Score = 138 bits (297), Expect = 5e-032
Identities = 57/165 (34%), Positives = 100/165 (60%)
Frame = -1 / -2
Query: 530 VLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSLLKCFN 351
VL+ P+PL++ H F +F P++ + I+W P+T+ +R L LLKC +
Sbjct: 502 VLSCPIPLISTHFFYPIFSLPIQFTFSLLCRGINSCSISWPPWTELERNALS*CLLKCSH 323
Query: 350 NLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQ 171
+ ++R T+S + ++ T Y K LL+ N+++S+V HM+VIS+ + C ++I+ Q
Sbjct: 322 HFKNRGTTSSA*IISCTTYVTCFK*LLKRRNVTISQVYHMNVISNRCAILCLVIITIYVQ 143
Query: 170 SWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIEVPK*NDLP 36
W PT+ +LL+ H+++ NS W+ +ST +S+NW+EVP+ N P
Sbjct: 142 HWLPTHSHLLDERHEVIWNSLWIFTNLSTWVSSNWVEVPQQNYSP 8
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 350 bits (758), Expect = 1e-095
Identities = 137/173 (79%), Positives = 154/173 (89%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 138 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 317
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAF 362
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AF
Sbjct: 318 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAF 497
Query: 363 EKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWA 521
EKASGK IPL F RRPGDA +++ T KAEREL+WKAKYGIEEMCRDQWNWA
Sbjct: 498 EKASGKSIPLKFCPRRPGDATAVYASTEKAERELDWKAKYGIEEMCRDQWNWA 656
Score = 221 bits (478), Expect = 6e-057
Identities = 110/174 (63%), Positives = 122/174 (70%)
Frame = -2 / -1
Query: 523 LAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFSNALTIS 344
LAQFH S HISSIPY AFQ +S SA V ASPGRL +RG+ FP+AFSNA TIS
Sbjct: 658 LAQFH*SLHISSIPYLAFQSNSRSAFSVEA*TAVASPGRLGQNLRGMLFPDAFSNAATIS 479
Query: 343 STDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAG 164
T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V *S P T G
Sbjct: 478 RTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTG 299
Query: 163 LLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
LPTATC G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 298 CLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 137
Score = 136 bits (292), Expect = 3e-031
Identities = 56/169 (33%), Positives = 101/169 (59%)
Frame = -1 / -3
Query: 518 PVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSLLKCFNNLQH 339
P+PL++ H F +F P++ + I+W P+T+ +R L LLKC ++ ++
Sbjct: 653 PIPLISTHFFYPIFSLPIQFTFSLLCRGINSCSISWPPWTELERNALS*CLLKCSHHFKN 474
Query: 338 RCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPP 159
R T+S + ++ T Y K LL+ N+++S+V HM+VIS+ + C ++I+ Q W P
Sbjct: 473 RGTTSSA*IISCTTYVTCFK*LLKRRNVTISQVYHMNVISNRCAILCLVIITIYVQHWLP 294
Query: 158 TNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIEVPK*NDLPFRI*TVDI 12
T+ +LL+ H+++ NS W+ ++T +S+NW+EVP+ N P I ++I
Sbjct: 293 THSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQQNYSPIWICLINI 147
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 340 bits (737), Expect = 1e-092
Identities = 135/173 (78%), Positives = 151/173 (87%)
Frame = +3 / +3
Query: 39 KIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGV 218
+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V GNDY T+DGT V
Sbjct: 3 RIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAV 182
Query: 219 RDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIF 398
RDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AFEKASGK IPL F
Sbjct: 183 RDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKF 362
Query: 399 GERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWNWA +NP+GY P+S
Sbjct: 363 CPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWNWARQNPWGYILPES 521
Score = 217 bits (468), Expect = 1e-055
Identities = 108/171 (63%), Positives = 119/171 (69%)
Frame = -2 / -3
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 517 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 338
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 337 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 158
Query: 193 *SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMI 41
*S P T G LPTATC G+RL GIP GSSP +PLG*APTGLKYLSK+I
Sbjct: 157 *SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKII 5
Score = 136 bits (291), Expect = 4e-031
Identities = 58/178 (32%), Positives = 106/178 (59%)
Frame = -1 / -2
Query: 578 LVTILLDRVR*SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFT 399
L+ I + +R ++ VL+ P+PL++ H F +F P + + I+W P+T
Sbjct: 542 LMYISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWT 363
Query: 398 KNQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKVNHMDVIS 219
+ QR L LLKC ++ ++R T+S + ++ T Y K LL+ N+++S+V HM+VIS
Sbjct: 362 ELQRNALS*CLLKCSHHFKNRGTTSSA*IISCTAYVTCFK*LLKRRNVTISQVYHMNVIS 183
Query: 218 DPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIEVPK*N 45
+ + C ++I+ Q W P++ +LL+ H+++ NS W+ ++T +S+NW+EVP+ N
Sbjct: 182 NRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQQN 9
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 312 bits (676), Expect = 3e-084
Identities = 125/173 (72%), Positives = 141/173 (81%)
Frame = +3 / +1
Query: 24 SDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATR 203
+DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V GNDY T+
Sbjct: 1 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 180
Query: 204 DGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKK 383
DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AFEKASGK
Sbjct: 181 DGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKS 360
Query: 384 IPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
IPL F RRPGDA +++ T EREL AKYGI EMC WA P+GY
Sbjct: 361 IPLKFCPRRPGDATAVYASTEXXERELGXXAKYGIXEMCXXXXXWAKXKPWGY 519
Score = 202 bits (436), Expect = 4e-051
Identities = 101/171 (59%), Positives = 112/171 (65%)
Frame = -2 / -2
Query: 538 P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFSN 359
P GF AQ S HIS IPY A Q +S S V ASPGRL RG+ P+AFSN
Sbjct: 515 PHGFXFAQXXXSXHISXIPYLAXQPNSRSXFSVEA*TAVASPGRLGQNFRGMLXPDAFSN 336
Query: 358 ALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPK 179
A TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V *S P
Sbjct: 335 AATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPY 156
Query: 178 TVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGS 26
T G LPTATC G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS
Sbjct: 155 TFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGS 3
Score = 116 bits (247), Expect = 4e-025
Identities = 48/131 (36%), Positives = 84/131 (64%)
Frame = -1 / -1
Query: 419 ITWAPFTKNQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKV 240
I+W P+T+ QR L LLKC ++ ++R T+S + ++ T Y K LL+ N+++S+V
Sbjct: 396 ISWPPWTELQRNALX*CLLKCSHHFKNRGTTSSA*IISCTAYVTCFK*LLKRRNVTISQV 217
Query: 239 NHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIE 60
HM+VIS+ + C ++I+ Q W P++ +LL+ H+++ NS W+ ++T +S+NW+E
Sbjct: 216 YHMNVISNRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVE 37
Query: 59 VPK*NDLPFRI 27
VP+ N P I
Sbjct: 36 VPQQNYSPIWI 4
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 295 bits (639), Expect = 4e-079
Identities = 118/153 (77%), Positives = 134/153 (87%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 233 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 412
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAF 362
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AF
Sbjct: 413 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAF 592
Query: 363 EKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
EKASGK IPL F RRPGDA +++ T KAERE
Sbjct: 593 EKASGKSIPLKFCPRRPGDATAVYASTEKAERE 691
Score = 185 bits (399), Expect = 4e-046
Identities = 94/153 (61%), Positives = 104/153 (67%)
Frame = -2 / -2
Query: 460 SLSALVVSENRISASPGRLSPKIRGIFFPEAFSNALTISSTDVPLPVPRLYASHPMLEFS 281
S SA V ASPGRL RG+ FP+AFSNA TIS T+VP PVP+L A PM
Sbjct: 690 SRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSNAATISRTEVPRPVPKL*AVQPMSLAL 511
Query: 280 KSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGS 101
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GS
Sbjct: 510 NSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGS 331
Query: 100 SPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
SP +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 330 SPIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 232
Score = 117 bits (251), Expect = 1e-025
Identities = 49/136 (36%), Positives = 87/136 (63%)
Frame = -1 / -1
Query: 419 ITWAPFTKNQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYARVLKKLLQCSNMSVSKV 240
I+W P+T+ QR L LLKC ++ ++R T+S + ++ T Y K LL+ N+++S+V
Sbjct: 649 ISWPPWTELQRNALS*CLLKCSHHFKNRGTTSSA*IISCTAYVTCFK*LLKRRNVTISQV 470
Query: 239 NHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNSSWVLAKISTRMSTNWIE 60
HM+VIS+ + C ++I+ Q W P++ +LL+ H+++ NS W+ ++T +S+NW+E
Sbjct: 469 YHMNVISNRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVE 290
Query: 59 VPK*NDLPFRI*TVDI 12
VP+ N P I ++I
Sbjct: 289 VPQQNYSPIWICLINI 242
>gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 3', mRNA sequence
Length = 720
Score = 255 bits (551), Expect = 5e-067
Identities = 97/132 (73%), Positives = 112/132 (84%)
Frame = +3 / +2
Query: 162 RPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSV 341
RP LTV GNDY T+DGTGVRDYIHV+DL+DGH AAL KLF+ +GCE YNLGTG+GTSV
Sbjct: 2 RPELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDKLFKTKDLGCEVYNLGTGQGTSV 181
Query: 342 LEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWA 521
LE+V AFEKASGKKIPL +RRPGD E +++ T KAERELNWKAKYG+EEMCRDQWNW
Sbjct: 182 LEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWT 361
Query: 522 SKNPYGYGSPDS 557
SKNP+GY P++
Sbjct: 362 SKNPWGYEPPET 397
Score = 167 bits (360), Expect = 1e-040
Identities = 80/131 (61%), Positives = 88/131 (67%)
Frame = -2 / -1
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG P GFLL QFHWSRHISS PY AFQ +S SA V +S SPG S ++GIFFP
Sbjct: 393 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFP 214
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
EAFSNA TIS TDVP PVPRL S P KS AA+ PS +S T +*S TPVPS V
Sbjct: 213 EAFSNAATISRTDVPCPVPRL*TSQPRSLVLKSLSRAAV*PSDKSMTCI*SLTPVPSFV* 34
Query: 193 *SFPKTVRAGL 161
*SFP TV +GL
Sbjct: 33 *SFPNTVSSGL 1
>gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 3', mRNA sequence
Length = 666
Score = 254 bits (549), Expect = 9e-067
Identities = 102/134 (76%), Positives = 113/134 (84%)
Frame = +3 / +1
Query: 156 GRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGT 335
GR+P L V GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGT
Sbjct: 1 GRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGT 180
Query: 336 SVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWN 515
SVLE+V AFEKASGK IPL F RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWN
Sbjct: 181 SVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWN 360
Query: 516 WASKNPYGYGSPDS 557
WA +NP+GY P+S
Sbjct: 361 WARQNPWGYILPES 402
Score = 150 bits (323), Expect = 1e-035
Identities = 78/132 (59%), Positives = 86/132 (65%)
Frame = -2 / -2
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 398 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 219
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 218 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 39
Query: 193 *SFPKTVRAGLL 158
*S P T G L
Sbjct: 38 *SLPYTFSTGCL 3
>gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 3', mRNA sequence
Length = 644
Score = 242 bits (523), Expect = 4e-063
Identities = 97/125 (77%), Positives = 107/125 (85%)
Frame = +3 / +2
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAF 362
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AF
Sbjct: 5 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAF 184
Query: 363 EKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
EKASGK IPL F RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWNWA +NP+GY
Sbjct: 185 EKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWNWARQNPWGY 364
Query: 543 GSPDS 557
P+S
Sbjct: 365 ILPES 379
Score = 146 bits (313), Expect = 3e-034
Identities = 75/124 (60%), Positives = 83/124 (66%)
Frame = -2 / -3
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 375 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 196
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA 194
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS V
Sbjct: 195 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW 16
Query: 193 *SFP 182
*S P
Sbjct: 15 *SLP 4
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 167 bits (359), Expect(2) = 2e-062
Identities = 66/87 (75%), Positives = 73/87 (83%)
Frame = +3 / +2
Query: 297 GCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKA 476
GC AYNLGTGRGTSVLE+V AFEKASGK IPL F RRPGDA +++ T KAEREL WKA
Sbjct: 149 GCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKA 328
Query: 477 KYGIEEMCRDQWNWASKNPYGYGSPDS 557
KYGIEEMCRDQWNWA +NP+GY P+S
Sbjct: 329 KYGIEEMCRDQWNWARQNPWGYILPES 409
Score = 111 bits (236), Expect(2) = 1e-032
Identities = 53/86 (61%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 405 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 226
Query: 373 EAFSNALTISSTDVPLPVPRLYASHP 296
+AFSNA TIS T+VP PVP+L A P
Sbjct: 225 DAFSNAATISRTEVPRPVPKL*AVQP 148
Score = 93.6 bits (198), Expect(2) = 2e-062
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = +3 / +1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSI 296
AVGR+P L V GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S I
Sbjct: 1 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDI 147
Score = 50.1 bits (103), Expect(2) = 1e-032
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = -2 / -3
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPT 152
SF +A + PSA+STT M*SRT VPS V *S P T G LPT
Sbjct: 128 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPT 3
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 238 bits (514), Expect = 6e-062
Identities = 90/113 (79%), Positives = 103/113 (91%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
ICRD++R+DP+WKIILLRYFNPVGAHPSG++GEDPRGIPNNLMP+VQQVAV RRP LTV
Sbjct: 209 ICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVF 388
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSV 341
GNDY T+DGTGVRDYIHV+DL+DGH AAL KLF+ +GCE YNLGTG+GTSV
Sbjct: 389 GNDYQTKDGTGVRDYIHVMDLSDGHTAALDKLFKTKDLGCEVYNLGTGQGTSV 547
Score = 155 bits (334), Expect = 4e-037
Identities = 76/113 (67%), Positives = 82/113 (72%)
Frame = -2 / -2
Query: 340 TDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGL 161
TDVP PVPRL S P KS AA+ PS +S T +*S TPVPS V *SFP TV +GL
Sbjct: 546 TDVPCPVPRL*TSQPRSLVLKSLSRAAV*PSDKSMTCI*SLTPVPSFV**SFPNTVSSGL 367
Query: 160 LPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
L TATC*T G+RL GIPRGSSP PLG*APTGLKYLSK+IF SGS R SR I
Sbjct: 366 LSTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLSKIIFQSGSARWTSRHI 208
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 213 bits (460), Expect(2) = 1e-058
Identities = 82/105 (78%), Positives = 94/105 (89%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 566 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 745
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNL 317
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S I C AYNL
Sbjct: 746 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIRCTAYNL 880
Score = 123 bits (264), Expect(2) = 2e-030
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -1
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 840 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 661
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 660 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 565
Score = 34.1 bits (68), Expect(2) = 1e-058
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3 / +1
Query: 321 TGRGTSVLEIVKAFEK 368
TGRGTSVLE+V AFEK
Sbjct: 883 TGRGTSVLEMVAAFEK 930
Score = 29.5 bits (58), Expect(2) = 2e-030
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / -2
Query: 367 FSNALTISSTDVPLPV 320
FSNA TIS T+VP PV
Sbjct: 929 FSNAATISRTEVPRPV 882
>gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 3', mRNA sequence
Length = 591
Score = 226 bits (488), Expect = 2e-058
Identities = 92/118 (77%), Positives = 100/118 (84%)
Frame = +3 / +2
Query: 204 DGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKK 383
DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNLGTGRGTSVLE+V AFEKASGK
Sbjct: 2 DGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKS 181
Query: 384 IPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
IPL F RRPGDA +++ T KAEREL WKAKYGIEEMCRDQWNWA +NP GY P+S
Sbjct: 182 IPLKFCPRRPGDATAVYASTEKAERELGWKAKYGIEEMCRDQWNWARQNPRGYILPES 355
Score = 140 bits (300), Expect = 2e-032
Identities = 71/117 (60%), Positives = 79/117 (67%)
Frame = -2 / -1
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 351 SGRM*PRGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 172
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPS 203
+AFSNA TIS T+VP PVP+L A PM SF +A + PSA+STT M*SRT VPS
Sbjct: 171 DAFSNAATISRTEVPRPVPKL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPS 1
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 204 bits (439), Expect(2) = 5e-058
Identities = 78/99 (78%), Positives = 90/99 (90%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 566 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 745
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIG 299
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IG
Sbjct: 746 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIG 862
Score = 125 bits (267), Expect(2) = 1e-030
Identities = 64/99 (64%), Positives = 70/99 (70%)
Frame = -2 / -2
Query: 298 PMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLL 119
PM SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL
Sbjct: 861 PMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLF 682
Query: 118 GIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
GIP GSSP +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 681 GIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 565
Score = 41.8 bits (85), Expect(2) = 5e-058
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3 / +3
Query: 297 GCEAYNLGTGRGTSVLEIVKA 359
GC AYNL TGRGTSVLE+V A
Sbjct: 861 GCTAYNLRTGRGTSVLEMVAA 923
Score = 29.0 bits (57), Expect(2) = 1e-030
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 361 NALTISSTDVPLPVPRLYASHP 296
NA TIS T+VP PV +L A P
Sbjct: 925 NAATISRTEVPRPVRKL*AVQP 860
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 217 bits (468), Expect = 1e-055
Identities = 83/105 (79%), Positives = 95/105 (90%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 566 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 745
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNL 317
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNL
Sbjct: 746 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNL 880
Score = 127 bits (271), Expect = 2e-028
Identities = 66/105 (62%), Positives = 73/105 (69%)
Frame = -2 / -1
Query: 316 RLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T 137
+L A PM SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC
Sbjct: 879 KL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWM 700
Query: 136 *GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 699 KGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 565
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 215 bits (463), Expect = 7e-055
Identities = 82/105 (78%), Positives = 95/105 (90%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDI+++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 566 IARDIHKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 745
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNL 317
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S IGC AYNL
Sbjct: 746 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNL 880
Score = 127 bits (271), Expect = 2e-028
Identities = 66/105 (62%), Positives = 73/105 (69%)
Frame = -2 / -2
Query: 316 RLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T 137
+L A PM SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC
Sbjct: 879 KL*AVQPMSLALNSF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWM 700
Query: 136 *GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 699 KGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 565
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 203 bits (438), Expect = 2e-051
Identities = 77/94 (81%), Positives = 88/94 (93%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
ICRD++R+DP+WKIILLRYFNPVGAHPSG++GEDPRGIPNNLMP+VQQVAV RRP LTV
Sbjct: 521 ICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVF 700
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFE 284
GNDY T+DGTGVRDYIHV+DL+DGH AAL KLF+
Sbjct: 701 GNDYQTKDGTGVRDYIHVMDLSDGHTAALDKLFK 802
Score = 134 bits (288), Expect = 9e-031
Identities = 65/93 (69%), Positives = 71/93 (76%)
Frame = -2 / -2
Query: 280 KSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGS 101
KS AA+ PS +S T +*S TPVPS V *SFP TV +GLL TATC*T G+RL GIPRGS
Sbjct: 798 KSLSRAAV*PSDKSMTCI*SLTPVPSFV**SFPNTVSSGLLSTATC*TNGMRLFGIPRGS 619
Query: 100 SPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
SP PLG*APTGLKYLSK+IF SGS R SR I
Sbjct: 618 SPINPLG*APTGLKYLSKIIFQSGSARWTSRHI 520
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 199 bits (429), Expect = 3e-050
Identities = 76/96 (79%), Positives = 88/96 (91%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 564 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 743
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENS 290
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S
Sbjct: 744 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKAS 851
Score = 123 bits (264), Expect = 2e-027
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -3
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 838 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 659
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 658 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 563
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 199 bits (429), Expect = 3e-050
Identities = 76/96 (79%), Positives = 88/96 (91%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 557 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 736
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENS 290
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+ S
Sbjct: 737 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFKAS 844
Score = 123 bits (264), Expect = 2e-027
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -2
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 831 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 652
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 651 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 556
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 198 bits (427), Expect = 6e-050
Identities = 75/94 (79%), Positives = 87/94 (92%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 495 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 674
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFE 284
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF+
Sbjct: 675 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLFK 776
Score = 123 bits (264), Expect = 2e-027
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -1
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 769 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 590
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 589 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 494
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 198 bits (426), Expect = 8e-050
Identities = 75/93 (80%), Positives = 86/93 (92%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 522 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 701
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLF 281
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF
Sbjct: 702 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLF 800
Score = 123 bits (264), Expect = 2e-027
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -3
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 796 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 617
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 616 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 521
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 198 bits (426), Expect = 8e-050
Identities = 75/93 (80%), Positives = 86/93 (92%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 520 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 699
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLF 281
GNDY T+DGT VRDYIHVVDLADGHI+ALQKLF
Sbjct: 700 GNDYQTKDGTAVRDYIHVVDLADGHISALQKLF 798
Score = 123 bits (264), Expect = 2e-027
Identities = 62/92 (67%), Positives = 68/92 (73%)
Frame = -2 / -1
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSS 98
SF +A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSS
Sbjct: 794 SF*SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSS 615
Query: 97 PRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
P +PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 614 PIWPLG*APTGLKYLSKIILQSGSAL*ISRAI 519
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 128 bits (275), Expect(4) = 6e-048
Identities = 47/61 (77%), Positives = 56/61 (91%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 580 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 759
Query: 183 G 185
G
Sbjct: 760 G 762
Score = 91.3 bits (193), Expect(3) = 2e-024
Identities = 42/62 (67%), Positives = 46/62 (74%)
Frame = -2 / -3
Query: 187 FPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISR 8
+P T G LPTATC G+RL GIP GSSP +PLG*APTGLKYLSK+I SGS *ISR
Sbjct: 764 YPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISR 585
Query: 7 QI 2
I
Sbjct: 584 AI 579
Score = 62.5 bits (130), Expect(4) = 6e-048
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +3
Query: 201 RDGTGVRDYIHVVDLADGHIAALQKLFENSSIGCE 305
R GT VRDYIHVVDLADGHI+ALQKLF+ S I +
Sbjct: 780 RMGTAVRDYIHVVDLADGHISALQKLFKASDIAVQ 884
Score = 33.1 bits (66), Expect(3) = 2e-024
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -2 / -1
Query: 277 SFCNAAICPSARSTTWM*SRTPVPSL 200
SF +A + PSA+STT M*SRT VP L
Sbjct: 856 SF*SAEM*PSAKSTT*M*SRTAVPIL 779
Score = 31.8 bits (63), Expect(4) = 6e-048
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 321 TGRGTSVLEIVKAFE 365
TGRGTSVLE+V AFE
Sbjct: 898 TGRGTSVLEMVAAFE 942
Score = 26.7 bits (52), Expect(3) = 2e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 364 SNALTISSTDVPLPV 320
SNA TIS T+VP PV
Sbjct: 941 SNAATISRTEVPRPV 897
Score = 25.4 bits (49), Expect(4) = 6e-048
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +2
Query: 174 TVLGNDYATRDG 209
T +GNDY T+DG
Sbjct: 752 TYMGNDYQTKDG 787
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 191 bits (411), Expect = 1e-047
Identities = 72/90 (80%), Positives = 83/90 (92%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 527 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 706
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQ 272
GNDY T+DGT VRDYIHVVDLADGHI+ALQ
Sbjct: 707 GNDYQTKDGTAVRDYIHVVDLADGHISALQ 796
Score = 121 bits (258), Expect = 1e-026
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = -2 / -1
Query: 268 NAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRY 89
+A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSSP +
Sbjct: 792 SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIW 613
Query: 88 PLG*APTGLKYLSKMIFHSGSER*ISRQI 2
PLG*APTGLKYLSK+I SGS *ISR I
Sbjct: 612 PLG*APTGLKYLSKIILQSGSAL*ISRAI 526
>dbj|BD236521.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 190 bits (409), Expect = 2e-047
Identities = 71/90 (78%), Positives = 83/90 (92%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
+ RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVGR+P L V
Sbjct: 53 LARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVY 232
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQ 272
GNDY T+DGT VRDYIHVVDLADGHI+ALQ
Sbjct: 233 GNDYQTKDGTAVRDYIHVVDLADGHISALQ 322
Score = 119 bits (255), Expect = 3e-026
Identities = 59/87 (67%), Positives = 65/87 (74%)
Frame = -2 / -3
Query: 268 NAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRY 89
+A + PSA+STT M*SRT VPS V *S P T G LPTATC G+RL GIP GSSP +
Sbjct: 318 SAEM*PSAKSTT*M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIW 139
Query: 88 PLG*APTGLKYLSKMIFHSGSER*ISR 8
PLG*APTGLKYLSK+I SGS *ISR
Sbjct: 138 PLG*APTGLKYLSKIILQSGSAL*ISR 58
>gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_B03_A029 3', mRNA sequence
Length = 689
Score = 186 bits (400), Expect = 3e-046
Identities = 70/98 (71%), Positives = 82/98 (83%)
Frame = +3 / +3
Query: 264 ALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSET 443
AL KLF+ +GCE YNLGTG+GTSVLE+V AFEKASGKKIPL +RRPGD E +++ T
Sbjct: 3 ALDKLFKTKDLGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYAST 182
Query: 444 TKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
KAERELNWKAKYG+EEMCRDQWNW SKNP+GY P++
Sbjct: 183 EKAERELNWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 296
Score = 127 bits (272), Expect = 1e-028
Identities = 59/97 (60%), Positives = 63/97 (64%)
Frame = -2 / -2
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG P GFLL QFHWSRHISS PY AFQ +S SA V +S SPG S ++GIFFP
Sbjct: 292 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFP 113
Query: 373 EAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNA 263
EAFSNA TIS TDVP PVPRL S P KS A
Sbjct: 112 EAFSNAATISRTDVPCPVPRL*TSQPRSLVLKSLSRA 2
>gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 5', mRNA sequence
Length = 634
Score = 116 bits (248), Expect(2) = 1e-045
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3 / -3
Query: 381 KIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
KIPL +RRPGD E +++ T KAERELNWKAKYG+EEMCRDQWNW SKNP+GY P++
Sbjct: 494 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 318
Score = 88.1 bits (186), Expect(2) = 1e-045
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = +3 / -2
Query: 240 DLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGK 380
DL+DGH AAL KLF+ +GCE YNLGTG+GTSVLE+V AFEKASGK
Sbjct: 633 DLSDGHTAALDKLFKTKDLGCEVYNLGTGQGTSVLEMVAAFEKASGK 493
Score = 76.7 bits (161), Expect(2) = 8e-027
Identities = 34/58 (58%), Positives = 38/58 (65%)
Frame = -2 / +1
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIF 380
SG P GFLL QFHWSRHISS PY AFQ +S SA V +S SPG S ++GIF
Sbjct: 322 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 495
Score = 64.8 bits (135), Expect(2) = 8e-027
Identities = 30/48 (62%), Positives = 32/48 (66%)
Frame = -2 / +2
Query: 382 FFPEAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARS 239
FFPEAFSNA TIS TDVP PVPRL S P KS AA+ PS +S
Sbjct: 491 FFPEAFSNAATISRTDVPCPVPRL*TSQPRSLVLKSLSRAAV*PSDKS 634
>gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 3', mRNA sequence
Length = 665
Score = 116 bits (248), Expect(3) = 2e-042
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3 / -3
Query: 381 KIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
KIPL +RRPGD E +++ T KAERELNWKAKYG+EEMCRDQWNW SKNP+GY P++
Sbjct: 522 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 346
Score = 76.7 bits (161), Expect(2) = 5e-024
Identities = 34/58 (58%), Positives = 38/58 (65%)
Frame = -2 / +2
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIF 380
SG P GFLL QFHWSRHISS PY AFQ +S SA V +S SPG S ++GIF
Sbjct: 350 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 523
Score = 65.7 bits (137), Expect(3) = 2e-042
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +3 / -2
Query: 270 QKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGK 380
++ F+ +GCE YNLGTG+GTSVLE+V AFEKASGK
Sbjct: 631 RQAFQTKDLGCEVYNLGTGQGTSVLEMVAAFEKASGK 521
Score = 55.1 bits (114), Expect(2) = 5e-024
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = -2 / +3
Query: 382 FFPEAFSNALTISSTDVPLPVPRLYASHP 296
FFPEAFSNA TIS TDVP PVPRL S P
Sbjct: 519 FFPEAFSNAATISRTDVPCPVPRL*TSQP 605
Score = 29.5 bits (58), Expect(3) = 2e-042
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 237 VDLADGHIAALQKLF 281
+DL+DGH AAL KLF
Sbjct: 663 LDLSDGHTAALDKLF 619
>gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 3', mRNA sequence
Length = 611
Score = 170 bits (365), Expect = 2e-041
Identities = 68/101 (67%), Positives = 78/101 (77%)
Frame = +3 / +3
Query: 255 HIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILF 434
H A + + +GC AYNLGTGRGTSVLE+V AFEKASGK IPL F RRPGDA ++
Sbjct: 45 HFCASEAI*SK*HLGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVY 224
Query: 435 SETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
+ T KAEREL WKAKYGIEEMCRDQWNWA +NP+GY P+S
Sbjct: 225 ASTEKAERELGWKAKYGIEEMCRDQWNWARQNPWGYILPES 347
Score = 111 bits (236), Expect(2) = 5e-026
Identities = 53/86 (61%), Positives = 58/86 (67%)
Frame = -2 / -2
Query: 553 SGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFP 374
SG *P GF LAQFH S HISSIPY AFQ +S SA V ASPGRL RG+ FP
Sbjct: 343 SGRM*PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFP 164
Query: 373 EAFSNALTISSTDVPLPVPRLYASHP 296
+AFSNA TIS T+VP PVP+L A P
Sbjct: 163 DAFSNAATISRTEVPRPVPKL*AVQP 86
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -1
Query: 277 SFCNAAICPSARSTTWM*SRT 215
SF +A + PSA+STT M*SRT
Sbjct: 65 SF*SAEM*PSAKSTT*M*SRT 3
>gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126F07 similar to UDP-glucose 4-epimerase (EC
5.1.3.2), mRNA sequence
Length = 624
Score = 73.0 bits (153), Expect(3) = 1e-031
Identities = 30/74 (40%), Positives = 51/74 (68%)
Frame = +3 / +2
Query: 261 AALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSE 440
A ++ L + S + YN+GTG+G++V E V++ ++A+G I ++ ERRPGD ++S+
Sbjct: 341 AHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVNITIVSLERRPGDYAEVYSD 520
Query: 441 TTKAERELNWKAKY 482
+K +RELNW A+Y
Sbjct: 521 PSKIQRELNWFAQY 562
Score = 64.3 bits (134), Expect(3) = 1e-031
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +3 / +2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L + G DY TRDGT VRDYIHV DL D H+ AL K
Sbjct: 239 AMGIIPGLQIKGTDYETRDGTCVRDYIHVTDLIDAHVKALNK 364
Score = 38.2 bits (77), Expect(3) = 1e-031
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +2
Query: 18 YRSDPEWKIILLRYFNPVGAHPSGYLGEDPR 110
Y + + +LRYFN +G+ P G LGE PR
Sbjct: 98 YARSSDLGVTILRYFNVIGSDPEGRLGEAPR 190
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 68.4 bits (143), Expect(4) = 4e-030
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A + A+G I + + RRPGD ++S+ +K +ELNW AKY
Sbjct: 268 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKY 441
Score = 54.2 bits (112), Expect(4) = 4e-030
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +3 / +1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAAL 269
A G P L V G DY+T DGT +RDYI V DL D H+ AL
Sbjct: 118 ARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKAL 237
Score = 39.1 bits (79), Expect(4) = 4e-030
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 42 IILLRYFNPVGAHPSGYLGEDPR 110
++LLRYFN +G+ P G LGE PR
Sbjct: 1 VMLLRYFNVIGSDPEGRLGEAPR 69
Score = 25.8 bits (50), Expect(4) = 4e-030
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYGS
Sbjct: 448 LKESLTVAWKWQKAHPNGYGS 510
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 68.4 bits (143), Expect(4) = 4e-030
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = +3 / +2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A + A+G I + + RRPGD ++S+ +K +ELNW AKY
Sbjct: 323 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKY 496
Score = 54.2 bits (112), Expect(4) = 4e-030
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +3 / +2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAAL 269
A G P L V G DY+T DGT +RDYI V DL D H+ AL
Sbjct: 173 ARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKAL 292
Score = 39.1 bits (79), Expect(4) = 4e-030
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 42 IILLRYFNPVGAHPSGYLGEDPR 110
++LLRYFN +G+ P G LGE PR
Sbjct: 56 VMLLRYFNVIGSDPEGRLGEAPR 124
Score = 25.8 bits (50), Expect(4) = 4e-030
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3 / +2
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYGS
Sbjct: 503 LKESLTVAWKWQKAHPNGYGS 565
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 66.1 bits (138), Expect(4) = 2e-029
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A + A+G I + + RRPGD ++S+ +K +EL+W AKY
Sbjct: 277 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKY 450
Score = 54.2 bits (112), Expect(4) = 2e-029
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +3 / +1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAAL 269
A G P L V G DY+T DGT +RDYI V DL D H+ AL
Sbjct: 127 ARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKAL 246
Score = 39.1 bits (79), Expect(4) = 2e-029
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 42 IILLRYFNPVGAHPSGYLGEDPR 110
++LLRYFN +G+ P G LGE PR
Sbjct: 10 VMLLRYFNVIGSDPEGRLGEAPR 78
Score = 25.8 bits (50), Expect(4) = 2e-029
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYGS
Sbjct: 457 LKESLTVAWKWQKAHPNGYGS 519
>gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H08_A029 5', mRNA sequence
Length = 660
Score = 128 bits (274), Expect = 8e-029
Identities = 47/53 (88%), Positives = 53/53 (100%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGR 161
ICRD++R+DPEWKIILLRYFNPVGAHPSG++GEDPRGIPNNLMP+VQQVAVGR
Sbjct: 502 ICRDVHRADPEWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVGR 660
>gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB05 5' end, mRNA sequence
Length = 723
Score = 116 bits (249), Expect = 2e-025
Identities = 42/52 (80%), Positives = 50/52 (96%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVG 158
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQVAVG
Sbjct: 566 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVG 721
>gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_F11_A021 5', mRNA sequence
Length = 683
Score = 64.3 bits (134), Expect(3) = 2e-025
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +3 / +3
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L + G DY TRDGT VRDYIHV DL D H+ AL K
Sbjct: 396 AMGIIPGLQIKGTDYETRDGTCVRDYIHVTDLIDAHVKALNK 521
Score = 51.5 bits (106), Expect(3) = 2e-025
Identities = 22/60 (36%), Positives = 40/60 (66%)
Frame = +3 / +3
Query: 261 AALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSE 440
A ++ L + S + YN+GTG+G++V E V++ ++A+G I ++ ERRPGD ++S+
Sbjct: 498 AHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVNITVVSLERRPGDYAEVYSD 677
Score = 38.2 bits (77), Expect(3) = 2e-025
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +3
Query: 18 YRSDPEWKIILLRYFNPVGAHPSGYLGEDPR 110
Y + + +LRYFN +G+ P G LGE PR
Sbjct: 255 YARSSDLGVTILRYFNVIGSDPEGRLGEAPR 347
>gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 3', mRNA sequence
Length = 748
Score = 68.4 bits (143), Expect(3) = 1e-023
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = +3 / +2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A + A+G I + + RRPGD ++S+ +K +ELNW AKY
Sbjct: 158 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDHAEVYSDPSKINQELNWSAKY 331
Score = 54.2 bits (112), Expect(3) = 1e-023
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +3 / +2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAAL 269
A G P L V G DY+T DGT +RDYI V DL D H+ AL
Sbjct: 8 ARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKAL 127
Score = 25.8 bits (50), Expect(3) = 1e-023
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3 / +2
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYGS
Sbjct: 338 LKESLTVAWKWQKAHPNGYGS 400
>gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 643
Score = 110 bits (235), Expect = 2e-023
Identities = 39/49 (79%), Positives = 47/49 (95%)
Frame = +3 / +2
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQV 149
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++QQV
Sbjct: 497 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQV 643
>gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 5', mRNA sequence
Length = 695
Score = 104 bits (221), Expect = 2e-021
Identities = 36/46 (78%), Positives = 44/46 (95%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYV 140
I RDIY++DP+W+IILLRYFNPVGAHPSG +GEDP+GIPNNLMP++
Sbjct: 558 IARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFI 695
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 659,507,392
Number of Sequences: 355925
Number of extensions: 10427342
Number of successful extensions: 55805
Number of sequences better than 1.0e-020: 44
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18103861360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)