TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 254 8e-071
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 238 5e-066
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 238 5e-066
gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo li... 236 3e-061
gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood... 231 9e-060
gb|DR692108.1|DR692108 EST1082195 Normalized pine embryo li... 230 1e-059
gb|BE241178.1|BE241178 NXNV_173_G07_F Nsf Xylem Normal wood... 217 9e-056
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 186 2e-050
gb|BM493349.1|BM493349 NXLV_061_G09_F NXLV (Nsf Xylem Late ... 186 3e-046
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 165 2e-042
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 165 2e-042
gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism... 165 2e-042
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 165 2e-042
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 165 2e-042
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 167 9e-042
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 167 9e-042
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 167 9e-042
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 167 9e-042
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 167 9e-042
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 164 1e-041
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 164 6e-041
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 164 6e-041
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 158 1e-040
gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library P... 158 1e-040
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 167 1e-040
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 167 1e-040
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 157 3e-040
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 156 4e-040
gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus cal... 157 2e-039
gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late w... 153 5e-039
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 161 8e-039
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 161 8e-039
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 161 8e-039
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 160 1e-038
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 160 1e-038
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 146 2e-038
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 160 2e-038
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 158 5e-038
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 158 5e-038
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 158 5e-038
gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciat... 152 1e-037
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 140 1e-036
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 152 3e-036
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 146 4e-036
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 146 4e-036
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 146 4e-036
gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pin... 142 9e-036
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 138 9e-036
gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch... 146 2e-035
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 147 1e-034
gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Plani... 136 4e-034
gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Plani... 136 4e-034
gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus mag... 140 7e-034
gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated w... 140 8e-034
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 142 4e-033
gb|BE241316.1|BE241316 NXNV_185_F10_F Nsf Xylem Normal wood... 142 5e-033
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 141 7e-033
gb|CX650304.1|CX650304 COLD1_44_F10.g1_A029 Root cold Pinus... 111 2e-032
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 122 3e-032
gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Plani... 129 6e-032
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 134 8e-031
gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clon... 126 7e-030
gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root ... 122 7e-030
gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo li... 93 2e-029
gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinu... 122 3e-028
gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side ... 116 3e-028
gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pi... 117 1e-027
gb|BF186451.1|BF186451 NXCI_137_F02_F NXCI (Nsf Xylem Compr... 111 6e-026
gb|BI397648.1|BI397648 NXPV_102_G12_F NXPV (Nsf Xylem Plani... 107 3e-025
gb|BI397653.1|BI397653 NXPV_102_H10_F NXPV (Nsf Xylem Plani... 105 7e-025
gb|BM903440.1|BM903440 NXRV_041_F05_F NXRV (Nsf Xylem Root ... 113 2e-024
gb|BM493626.1|BM493626 NXLV_068_D08_F NXLV (Nsf Xylem Late ... 105 4e-022
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 104 1e-021
gb|BX665992.1|BX665992 BX665992 RN Pinus pinaster cDNA clon... 87 2e-021
gb|DR091450.1|DR091450 RTAL1_21_E07.g1_A029 Roots plus adde... 89 3e-021
gb|AI812966.1|AI812966 2B1 Pine Lambda Zap Xylem library Pi... 73 3e-021
>gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 3', mRNA sequence
Length = 750
Score = 254 bits (549), Expect(2) = 8e-071
Identities = 93/138 (67%), Positives = 117/138 (84%)
Frame = -2 / -1
Query: 1055 PDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYH 876
P TPL+LAD ++ V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH
Sbjct: 696 PATPLKLADHFNLNGVFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYH 517
Query: 875 IDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTE 696
+DGYAF+VVGMDYG+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R E
Sbjct: 516 MDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAE 337
Query: 695 NLDTWYLGQETYIRVVDP 642
NLDTWYLGQETY+RVV+P
Sbjct: 336 NLDTWYLGQETYVRVVNP 283
Score = 143 bits (306), Expect(2) = 4e-034
Identities = 81/138 (58%), Positives = 89/138 (64%)
Frame = +1 / +2
Query: 643 GSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLF 822
G TTL VS*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L
Sbjct: 284 GFTTLTYVS*PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLS 463
Query: 823 SVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSS 1002
SV SP*SIPTT+ A PSM *+ TV SLF IS LYV L+ DV G IG+ GKSS
Sbjct: 464 SVQSP*SIPTTKKA*PSM**LCTVVSLFCRMISMNPLYVPLIIDVSSFGVLFIGLSGKSS 643
Query: 1003 V*TSFLSYRSANLRGVSG 1056
+ T F SA+L GV+G
Sbjct: 644 LKTPFRLK*SASLSGVAG 697
Score = 34.1 bits (68), Expect(2) = 8e-071
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -1
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 273 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 166
Score = 22.6 bits (43), Expect(2) = 4e-034
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1 / +2
Query: 565 FCLSLRRPQ*SMLSGATISVTL 630
FC+ R PQ* L G SV L
Sbjct: 209 FCMRERAPQ*RALLGRANSVLL 274
>gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_3_B11_A029 3', mRNA sequence
Length = 621
Score = 238 bits (514), Expect(2) = 5e-066
Identities = 86/123 (69%), Positives = 107/123 (86%)
Frame = -2 / -3
Query: 1010 VYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGE 831
V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH+DGYAF+VVGMDYG+
Sbjct: 613 VFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGD 434
Query: 830 WTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQETY+RV
Sbjct: 433 WTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRV 254
Query: 650 VDP 642
V+P
Sbjct: 253 VNP 245
Score = 134 bits (287), Expect(2) = 2e-031
Identities = 75/125 (60%), Positives = 81/125 (64%)
Frame = +1 / +3
Query: 643 GSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLF 822
G TTL VS*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L
Sbjct: 246 GFTTLTYVS*PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLS 425
Query: 823 SVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSS 1002
SV SP*SIPTT+ A PSM *+ TV SLF IS LYV L+ DV G IG+ GKSS
Sbjct: 426 SVQSP*SIPTTKKA*PSM**LCTVVSLFCRMISMNPLYVPLIIDVSSFGVLFIGLSGKSS 605
Query: 1003 V*TSF 1017
+ T F
Sbjct: 606 LKTPF 620
Score = 34.1 bits (68), Expect(2) = 5e-066
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -3
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 235 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 128
Score = 22.6 bits (43), Expect(2) = 2e-031
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1 / +3
Query: 565 FCLSLRRPQ*SMLSGATISVTL 630
FC+ R PQ* L G SV L
Sbjct: 171 FCMRERAPQ*RALLGRANSVLL 236
>gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_3_A11_A029 3', mRNA sequence
Length = 599
Score = 238 bits (514), Expect(2) = 5e-066
Identities = 86/123 (69%), Positives = 107/123 (86%)
Frame = -2 / -3
Query: 1010 VYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGE 831
V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH+DGYAF+VVGMDYG+
Sbjct: 591 VFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGD 412
Query: 830 WTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQETY+RV
Sbjct: 411 WTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRV 232
Query: 650 VDP 642
V+P
Sbjct: 231 VNP 223
Score = 134 bits (287), Expect(2) = 2e-031
Identities = 75/125 (60%), Positives = 81/125 (64%)
Frame = +1 / +2
Query: 643 GSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLF 822
G TTL VS*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L
Sbjct: 224 GFTTLTYVS*PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLS 403
Query: 823 SVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSS 1002
SV SP*SIPTT+ A PSM *+ TV SLF IS LYV L+ DV G IG+ GKSS
Sbjct: 404 SVQSP*SIPTTKKA*PSM**LCTVVSLFCRMISMNPLYVPLIIDVSSFGVLFIGLSGKSS 583
Query: 1003 V*TSF 1017
+ T F
Sbjct: 584 LKTPF 598
Score = 34.1 bits (68), Expect(2) = 5e-066
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -3
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 213 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 106
Score = 22.6 bits (43), Expect(2) = 2e-031
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1 / +2
Query: 565 FCLSLRRPQ*SMLSGATISVTL 630
FC+ R PQ* L G SV L
Sbjct: 149 FCMRERAPQ*RALLGRANSVLL 214
>gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH027 3' end, mRNA sequence
Length = 670
Score = 236 bits (509), Expect = 3e-061
Identities = 86/130 (66%), Positives = 109/130 (83%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYH 876
P TPL+LAD ++ V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH
Sbjct: 158 PATPLKLADHFNLNGVFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYH 337
Query: 875 IDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTE 696
+DGYAF+VVGMDYG+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R E
Sbjct: 338 MDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAE 517
Query: 695 NLDTWYLGQE 666
NLDTWYLGQ+
Sbjct: 518 NLDTWYLGQK 547
Score = 128 bits (274), Expect = 7e-029
Identities = 74/129 (57%), Positives = 82/129 (63%)
Frame = +1 / -2
Query: 670 *PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLFSVHSP*SIP 849
*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L SV SP*SIP
Sbjct: 543 *PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLSSVQSP*SIP 364
Query: 850 TTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSSV*TSFLSYR 1029
TT+ A PSM *+ TV SLF IS L V L+ DV G IG+ GKSS+ T F
Sbjct: 363 TTKKA*PSM**LCTVVSLFCRMISMNPL*VPLIIDVSSFGVLFIGLSGKSSLKTPFRLK* 184
Query: 1030 SANLRGVSG 1056
SA+L GV+G
Sbjct: 183 SASLSGVAG 157
>gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_D10 5' similar to Arabidopsis thaliana
sequence At4g12420 pollen-specific protein - like
predicted GPI-anchored protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 403
Score = 231 bits (498), Expect = 9e-060
Identities = 83/118 (70%), Positives = 103/118 (87%)
Frame = -2 / +3
Query: 995 FPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENS 816
FP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH+DGYAF+VVGMDYG+WTE+S
Sbjct: 3 FPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDS 182
Query: 815 RGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
RGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQETY+RVV+P
Sbjct: 183 RGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNP 356
Score = 122 bits (261), Expect = 4e-027
Identities = 70/118 (59%), Positives = 75/118 (63%)
Frame = +1 / -1
Query: 643 GSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLF 822
G TTL VS*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L
Sbjct: 355 GFTTLTYVS*PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLS 176
Query: 823 SVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGK 996
SV SP*SIPTT+ A PSM *+ TV SLF IS L V L+ DV G IG+ GK
Sbjct: 175 SVQSP*SIPTTKKA*PSM**LCTVVSLFCRMISMNPL*VPLIIDVSSFGVLFIGLSGK 2
>gb|DR692108.1|DR692108 EST1082195 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADI11 3' end, mRNA sequence
Length = 734
Score = 230 bits (497), Expect = 1e-059
Identities = 84/127 (66%), Positives = 106/127 (83%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYH 876
P TPL+LAD ++ V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ+YH
Sbjct: 352 PATPLKLADHFNLNGVFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQSYH 531
Query: 875 IDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTE 696
+DGYAF+VVGMDYG+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R E
Sbjct: 532 MDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAE 711
Query: 695 NLDTWYL 675
NLDTWYL
Sbjct: 712 NLDTWYL 732
Score = 127 bits (273), Expect = 1e-028
Identities = 73/128 (57%), Positives = 81/128 (63%)
Frame = +1 / -1
Query: 673 PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLFSVHSP*SIPT 852
PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L SV SP*SIPT
Sbjct: 734 PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLSSVQSP*SIPT 555
Query: 853 TQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSSV*TSFLSYRS 1032
T+ A PSM *+ TV SLF IS L V L+ DV G IG+ GKSS+ T F S
Sbjct: 554 TKKA*PSM**LCTVVSLFCRMISMNPL*VPLIIDVSSFGVLFIGLSGKSSLKTPFRLK*S 375
Query: 1033 ANLRGVSG 1056
A+L GV+G
Sbjct: 374 ASLSGVAG 351
>gb|BE241178.1|BE241178 NXNV_173_G07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_173_G07 5' similar to Arabidopsis thaliana sequence
At4g12420 pollen-specific protein - like predicted
GPI-anchored protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 614
Score = 217 bits (469), Expect = 9e-056
Identities = 80/133 (60%), Positives = 100/133 (75%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYH 876
P TPL+LAD ++ V+ LDFP P++ P + TS+IN TYK F+EI+ QNND+TVQ YH
Sbjct: 212 PATPLKLADHFNLNGVFKLDFPERPMNRTPKLDTSIINGTYKGFMEIILQNNDTTVQXYH 391
Query: 875 IDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTE 696
+DGYAF+VVGMDYG+WT S TYNKWDGV+R T QVFP AWTA+++S D+ G WN E
Sbjct: 392 MDGYAFFVVGMDYGDWTXXSXXTYNKWDGVARATAQVFPNAWTAILVSXDNVGMWNXXAE 571
Query: 695 NLDTWYLGQETYI 657
NL TWYLG Y+
Sbjct: 572 NLXTWYLGXXXYV 610
Score = 119 bits (254), Expect = 4e-026
Identities = 70/129 (54%), Positives = 78/129 (60%)
Frame = +1 / -3
Query: 670 *PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLFSVHSP*SIP 849
*PRY V RFS F P LS D+ AV A G T V R TPSHLL*V L SV SP*SIP
Sbjct: 597 *PRYQVXRFSAXXFHMPTLSXDTRIAVQALGKTCAVARATPSHLL*VXXLXSVQSP*SIP 418
Query: 850 TTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGKSSV*TSFLSYR 1029
TT+ A PSM + TV SLF IS L V L+ DV G IG+ GKSS+ T F
Sbjct: 417 TTKKA*PSM*XLCTVVSLFCRMISMNPL*VPLIIDVSSFGVLFIGLSGKSSLKTPFRLK* 238
Query: 1030 SANLRGVSG 1056
SA+L GV+G
Sbjct: 237 SASLSGVAG 211
>gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_B05_A029 5', mRNA sequence
Length = 843
Score = 186 bits (400), Expect(2) = 2e-050
Identities = 66/86 (76%), Positives = 80/86 (93%)
Frame = -2 / -1
Query: 899 DSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSP 720
D+TVQ+YH+DGYAF+VVGMDYG+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+
Sbjct: 843 DTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNV 664
Query: 719 GFWNVRTENLDTWYLGQETYIRVVDP 642
G WN+R ENLDTWYLGQETY+RVV+P
Sbjct: 663 GMWNLRAENLDTWYLGQETYVRVVNP 586
Score = 104 bits (221), Expect(2) = 2e-022
Identities = 55/84 (65%), Positives = 58/84 (69%)
Frame = +1 / +2
Query: 643 GSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPRLF 822
G TTL VS*PRY VSRFS R F P LS D+ AV A G T V R TPSHLL*VP L
Sbjct: 587 GFTTLTYVS*PRYQVSRFSARRFHMPTLSRDTRIAVQALGKTCAVARATPSHLL*VPLLS 766
Query: 823 SVHSP*SIPTTQNAYPSMW*VWTV 894
SV SP*SIPTT+ A PSM *+ TV
Sbjct: 767 SVQSP*SIPTTKKA*PSM**LCTV 838
Score = 34.1 bits (68), Expect(2) = 2e-050
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -1
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 576 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 469
Score = 22.6 bits (43), Expect(2) = 2e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1 / +2
Query: 565 FCLSLRRPQ*SMLSGATISVTL 630
FC+ R PQ* L G SV L
Sbjct: 512 FCMRERAPQ*RALLGRANSVLL 577
>gb|BM493349.1|BM493349 NXLV_061_G09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_061_G09 5' similar to Arabidopsis thaliana
sequence At4g12420 pollen-specific protein - like
predicted GPI-anchored protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 186 bits (400), Expect = 3e-046
Identities = 66/104 (63%), Positives = 86/104 (82%)
Frame = -2 / +3
Query: 974 GPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKW 795
G P + TS+IN TYK F+EI+ QNND+TV +YH+DGYAF+VVGMDYG+WTE++RGTY +W
Sbjct: 27 GTP*LDTSIINGTYKGFMEIILQNNDTTVHSYHMDGYAFFVVGMDYGDWTEHTRGTYIRW 206
Query: 794 DGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQET 663
DGV+R T FP AWTA+++SLD+ G W++R E+L TWY GQET
Sbjct: 207 DGVARATAXXFPNAWTAILVSLDNVGMWHLRAESLXTWYXGQET 338
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 165 bits (354), Expect(2) = 2e-042
Identities = 58/117 (49%), Positives = 89/117 (76%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R
Sbjct: 270 PDSPRGGSGYLQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANR 449
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
+YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 450 KSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 620
Score = 28.6 bits (56), Expect(2) = 2e-042
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 201 PSTTPLQLADYYNISGVYTV 260
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 165 bits (354), Expect(2) = 2e-042
Identities = 58/117 (49%), Positives = 89/117 (76%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R
Sbjct: 189 PDSPRGGSGYLQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANR 368
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
+YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 369 KSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 539
Score = 28.6 bits (56), Expect(2) = 2e-042
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 120 PSTTPLQLADYYNISGVYTV 179
>gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_H04_A032 5', mRNA sequence
Length = 815
Score = 165 bits (354), Expect(2) = 2e-042
Identities = 58/117 (49%), Positives = 89/117 (76%)
Frame = -2 / +2
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R
Sbjct: 437 PDSPRGGSGYLQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANR 616
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
+YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 617 KSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 787
Score = 28.6 bits (56), Expect(2) = 2e-042
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +2
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 368 PSTTPLQLADYYNISGVYTV 427
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 165 bits (354), Expect(2) = 2e-042
Identities = 58/117 (49%), Positives = 89/117 (76%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R
Sbjct: 210 PDSPRGGSGYLQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANR 389
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
+YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 390 KSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 560
Score = 28.6 bits (56), Expect(2) = 2e-042
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 141 PSTTPLQLADYYNISGVYTV 200
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 165 bits (354), Expect(2) = 2e-042
Identities = 58/117 (49%), Positives = 89/117 (76%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R
Sbjct: 147 PDSPRGGSGYLQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANR 326
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
+YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 327 KSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 497
Score = 28.6 bits (56), Expect(2) = 2e-042
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 78 PSTTPLQLADYYNISGVYTV 137
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 167 bits (359), Expect(2) = 9e-042
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +2
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 194 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 373
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 374 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 553
Query: 632 Y 630
+
Sbjct: 554 F 556
Score = 24.0 bits (46), Expect(2) = 9e-042
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 128 PDTPLKLADYLKISGVFNV 184
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 167 bits (359), Expect(2) = 9e-042
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 175 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 354
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 355 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 534
Query: 632 Y 630
+
Sbjct: 535 F 537
Score = 24.0 bits (46), Expect(2) = 9e-042
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 109 PDTPLKLADYLKISGVFNV 165
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 167 bits (359), Expect(2) = 9e-042
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 175 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 354
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 355 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 534
Query: 632 Y 630
+
Sbjct: 535 F 537
Score = 24.0 bits (46), Expect(2) = 9e-042
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 109 PDTPLKLADYLKISGVFNV 165
>gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 3', mRNA sequence
Length = 730
Score = 167 bits (359), Expect(2) = 9e-042
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 73 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 252
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 253 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 432
Query: 632 Y 630
+
Sbjct: 433 F 435
Score = 24.0 bits (46), Expect(2) = 9e-042
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 7 PDTPLKLADYLKISGVFNV 63
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 167 bits (359), Expect(2) = 9e-042
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 252 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 431
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 432 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 611
Query: 632 Y 630
+
Sbjct: 612 F 614
Score = 24.0 bits (46), Expect(2) = 9e-042
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +3
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 186 PDTPLKLADYLKISGVFNV 242
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 164 bits (353), Expect(2) = 1e-041
Identities = 60/119 (50%), Positives = 88/119 (73%)
Frame = -2 / +2
Query: 998 DFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTEN 819
D P ++++V+N Y+NF+EIVFQNN++T+Q++H+DGY+F+VVGM+ G WT
Sbjct: 182 DSPNGGSSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPA 361
Query: 818 SRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
SR YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R+E +LGQ+TY+RV P
Sbjct: 362 SRNGYNLFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTYVRVRSP 538
Score = 26.3 bits (51), Expect(2) = 1e-041
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TP++LAD Y+ VY +
Sbjct: 113 PSTPMQLADYYNISGVYIM 169
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 164 bits (353), Expect(2) = 6e-041
Identities = 61/119 (51%), Positives = 89/119 (74%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 447 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 626
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNG 636
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 627 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSPAG 803
Score = 24.0 bits (46), Expect(2) = 6e-041
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +3
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 381 PDTPLKLADYLKISGVFNV 437
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 164 bits (353), Expect(2) = 6e-041
Identities = 60/118 (50%), Positives = 89/118 (75%)
Frame = -2 / +1
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S Y
Sbjct: 133 PTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEY 312
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGGY 630
N +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G +
Sbjct: 313 NLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSF 486
Score = 24.0 bits (46), Expect(2) = 6e-041
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 58 PDTPLKLADYLKISGVFNV 114
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 158 bits (340), Expect(2) = 1e-040
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -2 / +3
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 129 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 308
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 309 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 461
Score = 29.0 bits (57), Expect(2) = 1e-040
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 54 PSTPLQLADYYNIDGVYTV 110
>gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 158 bits (340), Expect(2) = 1e-040
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 155 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 334
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 335 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 487
Score = 29.0 bits (57), Expect(2) = 1e-040
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 80 PSTPLQLADYYNIDGVYTV 136
>gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 3', mRNA sequence
Length = 696
Score = 167 bits (359), Expect = 1e-040
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 43 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 222
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 223 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 402
Query: 632 Y 630
+
Sbjct: 403 F 405
>gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 3', mRNA sequence
Length = 664
Score = 167 bits (359), Expect = 1e-040
Identities = 61/121 (50%), Positives = 90/121 (74%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 4 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 183
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGG 633
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G
Sbjct: 184 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGS 363
Query: 632 Y 630
+
Sbjct: 364 F 366
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 157 bits (337), Expect(2) = 3e-040
Identities = 60/111 (54%), Positives = 84/111 (75%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 137 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 316
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ TYI+V
Sbjct: 317 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKV 469
Score = 29.0 bits (57), Expect(2) = 3e-040
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 62 PSTPLQLADYYNIDGVYTV 118
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA
sequence
Length = 732
Score = 156 bits (336), Expect(2) = 4e-040
Identities = 60/111 (54%), Positives = 84/111 (75%)
Frame = -2 / -2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H DGY+F+VVGMD GEWT SR Y
Sbjct: 632 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHSDGYSFFVVGMDGGEWTPASRKYY 453
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 452 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 300
Score = 29.0 bits (57), Expect(2) = 4e-040
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / -2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 707 PSTPLQLADYYNIDGVYTV 651
>gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 5', mRNA sequence
Length = 717
Score = 157 bits (337), Expect(2) = 2e-039
Identities = 57/113 (50%), Positives = 84/113 (74%)
Frame = -2 / +3
Query: 998 DFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTEN 819
D P ++++V+N Y+NF+EIVFQNN++T+Q++H+DGY+F+VVGM+ G WT
Sbjct: 378 DSPNGGSSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPA 557
Query: 818 SRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETY 660
SR YN +D VSRCTTQV+P +WTA++L+ D+ G WN+R+E +LGQ+TY
Sbjct: 558 SRNGYNLFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTY 716
Score = 26.3 bits (51), Expect(2) = 2e-039
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TP++LAD Y+ VY +
Sbjct: 309 PSTPMQLADYYNISGVYIM 365
>gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV133_F09 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 153 bits (328), Expect(2) = 5e-039
Identities = 59/111 (53%), Positives = 82/111 (73%)
Frame = -2 / +3
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT S Y
Sbjct: 294 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYY 473
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV P +WTAV+L+ D+ G WN+R+E YLGQ+TYI V
Sbjct: 474 NLFDAVSRCTTQVXPQSWTAVLLTFDNAGMWNLRSEIWXRQYLGQQTYIXV 626
Score = 29.0 bits (57), Expect(2) = 5e-039
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 219 PSTPLQLADYYNIDGVYTV 275
>gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5', mRNA sequence
Length = 504
Score = 161 bits (346), Expect = 8e-039
Identities = 58/111 (52%), Positives = 86/111 (77%)
Frame = -2 / +2
Query: 962 IRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVS 783
++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S YN +D VS
Sbjct: 8 LQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVS 187
Query: 782 RCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGGY 630
RCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G +
Sbjct: 188 RCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSF 340
>gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5' similar to Arabidopsis thaliana sequence
At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 161 bits (346), Expect = 8e-039
Identities = 58/111 (52%), Positives = 86/111 (77%)
Frame = -2 / +2
Query: 962 IRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVS 783
++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S YN +D VS
Sbjct: 8 LQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVS 187
Query: 782 RCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGGY 630
RCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G +
Sbjct: 188 RCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSF 340
>gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 5', mRNA sequence
Length = 655
Score = 161 bits (346), Expect = 8e-039
Identities = 58/111 (52%), Positives = 86/111 (77%)
Frame = -2 / +1
Query: 962 IRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVS 783
++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S YN +D VS
Sbjct: 1 LQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVS 180
Query: 782 RCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGGY 630
RCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G +
Sbjct: 181 RCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSF 333
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 160 bits (345), Expect = 1e-038
Identities = 56/111 (50%), Positives = 86/111 (77%)
Frame = -2 / +3
Query: 974 GPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKW 795
G ++T+ +N Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD G+WT +R +YN +
Sbjct: 3 GSGYLQTAALNVEYRAFIEIVFQNYENTIQSWHLDGYSFFVVGMDGGDWTPANRKSYNLF 182
Query: 794 DGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
D VSRCTTQV+P +WTA+ L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 183 DAVSRCTTQVYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 335
>gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F03_A029 3', mRNA sequence
Length = 703
Score = 160 bits (345), Expect = 1e-038
Identities = 58/111 (52%), Positives = 86/111 (77%)
Frame = -2 / +1
Query: 962 IRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVS 783
++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S YN +D VS
Sbjct: 76 LQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVS 255
Query: 782 RCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPNGGY 630
RCTTQV+P +WTA+ + LD+ G WN+R+EN YLGQ+ Y+RV P G +
Sbjct: 256 RCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSF 408
>gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 5', mRNA sequence
Length = 728
Score = 146 bits (313), Expect(2) = 2e-038
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = -2 / -3
Query: 842 DYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQET 663
DYG+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQET
Sbjct: 726 DYGDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQET 547
Query: 662 YIRVVDP 642
Y+RVV+P
Sbjct: 546 YVRVVNP 526
Score = 34.1 bits (68), Expect(2) = 2e-038
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -3
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 516 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 409
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 160 bits (343), Expect = 2e-038
Identities = 55/107 (51%), Positives = 85/107 (79%)
Frame = -2 / +1
Query: 962 IRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVS 783
++T+ +N Y+ F+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R YN +D VS
Sbjct: 7 LQTAALNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVS 186
Query: 782 RCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
RCTTQV+P +WTA++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 187 RCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSP 327
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 158 bits (340), Expect = 5e-038
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 14 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 193
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 194 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 346
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 478
Score = 158 bits (340), Expect = 5e-038
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -2 / +3
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 6 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 185
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 186 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 338
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 158 bits (340), Expect = 5e-038
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 32 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 211
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 212 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 364
>gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132C01 similar to L-ASCORBATE OXIDASE (EC
1.10.3.3), mRNA sequence
Length = 407
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 58/111 (52%), Positives = 84/111 (75%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+ ++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 74 PHGGSGFMQTAALSVEYRTFVEIVFQNYENTIPSWHLDGYSFFVVGMDGGEWTPASRKYY 253
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
+ +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 254 HLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARPYLGQQTYIKV 406
Score = 24.9 bits (48), Expect(2) = 1e-037
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2 / +2
Query: 1049 TPLRLADLYDKKDVYTL 999
TPL+LAD Y VYT+
Sbjct: 5 TPLQLADYYHIDGVYTV 55
>gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_F10_A029 3', mRNA sequence
Length = 790
Score = 140 bits (300), Expect(2) = 1e-036
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = -2 / +1
Query: 836 GEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYI 657
G+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQETY+
Sbjct: 1 GDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYV 180
Query: 656 RVVDP 642
RVV+P
Sbjct: 181 RVVNP 195
Score = 34.1 bits (68), Expect(2) = 1e-036
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / +1
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE+ P N LYCG L QK Q +++++
Sbjct: 205 NKTELALPSNALYCGALSRMQKPQSHTNDEKASASS 312
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA
sequence
Length = 630
Score = 152 bits (327), Expect = 3e-036
Identities = 57/95 (60%), Positives = 77/95 (81%)
Frame = -2 / +1
Query: 935 YKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPG 756
Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR YN +D VSRCTTQV+P
Sbjct: 7 YRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQVYPQ 186
Query: 755 AWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
+WTAV+L+ D+ G WN+R+E YLGQ+TYI+V
Sbjct: 187 SWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKV 291
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 146 bits (313), Expect(2) = 4e-036
Identities = 52/114 (45%), Positives = 84/114 (73%)
Frame = -2 / -2
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++ +V + +++F+EIVFQNN++T+Q++H+DGY+F+V GM+ G+W+ SR
Sbjct: 399 PDYPRGGGAYLQAAVTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASR 220
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
+YN +D VSR TTQV+P +WTA+++ LD+ G WN+R+ YLGQ+ Y++V
Sbjct: 219 KSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 58
Score = 26.3 bits (51), Expect(2) = 4e-036
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P DTPL+LAD + + V+ L
Sbjct: 468 PLDTPLKLADYFKIQGVFNL 409
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 146 bits (313), Expect(2) = 4e-036
Identities = 52/114 (45%), Positives = 84/114 (73%)
Frame = -2 / -3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++ +V + +++F+EIVFQNN++T+Q++H+DGY+F+V GM+ G+W+ SR
Sbjct: 646 PDYPRGGGAYLQAAVTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASR 467
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
+YN +D VSR TTQV+P +WTA+++ LD+ G WN+R+ YLGQ+ Y++V
Sbjct: 466 KSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 305
Score = 26.3 bits (51), Expect(2) = 4e-036
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / -3
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P DTPL+LAD + + V+ L
Sbjct: 715 PLDTPLKLADYFKIQGVFNL 656
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 146 bits (313), Expect(2) = 4e-036
Identities = 52/114 (45%), Positives = 84/114 (73%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P G ++ +V + +++F+EIVFQNN++T+Q++H+DGY+F+V GM+ G+W+ SR
Sbjct: 124 PDYPRGGGAYLQAAVTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASR 303
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRV 651
+YN +D VSR TTQV+P +WTA+++ LD+ G WN+R+ YLGQ+ Y++V
Sbjct: 304 KSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 465
Score = 26.3 bits (51), Expect(2) = 4e-036
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 1058 PPDTPLRLADLYDKKDVYTL 999
P DTPL+LAD + + V+ L
Sbjct: 55 PLDTPLKLADYFKIQGVFNL 114
>gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_F07_A029 5', mRNA sequence
Length = 768
Score = 142 bits (304), Expect(2) = 9e-036
Identities = 52/96 (54%), Positives = 75/96 (78%)
Frame = -2 / +2
Query: 983 PIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTY 804
P G ++T+ ++ Y+ F+EIVFQN ++T+Q++H+DGY+F+VVGMD GEWT SR Y
Sbjct: 461 PNGGSGFMQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYY 640
Query: 803 NKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTE 696
N +D VSRCTTQV+P +WTAV+L+ D+ G WN+R+E
Sbjct: 641 NLFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSE 748
Score = 29.0 bits (57), Expect(2) = 9e-036
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 1055 PDTPLRLADLYDKKDVYTL 999
P TPL+LAD Y+ VYT+
Sbjct: 386 PSTPLQLADYYNIDGVYTV 442
>gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_070_A11 5' similar to Arabidopsis thaliana
sequence At4g12420 pollen-specific protein - like
predicted GPI-anchored protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 448
Score = 138 bits (296), Expect(2) = 9e-036
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = -2 / +3
Query: 836 GEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYI 657
G+WTE+SRGTYNKWDGV+R T QVFP AWTA+++SLD+ G WN+R ENLDTWYLGQETY
Sbjct: 18 GDWTEDSRGTYNKWDGVARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYX 197
Query: 656 RVVDP 642
RVV+P
Sbjct: 198 RVVNP 212
Score = 32.7 bits (65), Expect(2) = 9e-036
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2 / +3
Query: 629 NVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASAA 522
N TE P N LYCG L QK Q +++++
Sbjct: 222 NKTEXALPSNALYCGALSRMQKPQSHTNDEKASASS 329
>gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 5', mRNA sequence
Length = 703
Score = 146 bits (313), Expect(2) = 2e-035
Identities = 52/100 (52%), Positives = 78/100 (78%)
Frame = -2 / +1
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P +G ++T+V+ S ++ F+EIVFQN++ T+Q++H+DGY+F+V+GMD G+WTE S
Sbjct: 394 PDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASM 573
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTEN 693
YN +D VSRCTTQV+P +WTA+ + LD+ G WN+R+EN
Sbjct: 574 KEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSEN 693
Score = 24.0 bits (46), Expect(2) = 2e-035
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +1
Query: 1055 PDTPLRLADLYDKKDVYTL 999
PDTPL+LAD V+ +
Sbjct: 328 PDTPLKLADYLKISGVFNV 384
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 147 bits (316), Expect = 1e-034
Identities = 51/94 (54%), Positives = 76/94 (80%)
Frame = -2 / +2
Query: 923 LEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTA 744
+EIVFQN ++T+Q++H+DGYAF+VVG+D G+WT +R YN +D VSRCTTQV+P +WTA
Sbjct: 2 VEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQVYPNSWTA 181
Query: 743 VMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDP 642
++L+ D+ G WN+R++ + +LGQ+TY+RV P
Sbjct: 182 ILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSP 283
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 645,134,097
Number of Sequences: 355925
Number of extensions: 10503680
Number of successful extensions: 57949
Number of sequences better than 1.0e-020: 105
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16068516000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)