TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 285 3e-076
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 285 3e-076
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 285 3e-076
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 285 3e-076
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 285 3e-076
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 285 3e-076
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 244 4e-064
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 228 3e-059
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 225 4e-058
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 219 2e-056
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 219 2e-056
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 212 3e-054
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 210 1e-053
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 197 9e-050
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 190 8e-048
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 187 7e-047
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 179 2e-044
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 125 1e-038
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 158 4e-038
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 142 2e-033
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 142 3e-033
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 141 5e-033
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 140 1e-032
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 110 7e-031
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 132 3e-030
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 129 2e-029
gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciat... 122 3e-027
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 102 3e-021
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 59 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 238
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 239 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 418
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -1
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 450 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 271
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 270 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 91
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 90 KKFIP*AQPQAL 55
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -3
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 391 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 212
Query: 158 VESDQA 141
+ SDQA
Sbjct: 211 IVSDQA 194
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -3
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 124 STLLPSPCIQVEEIHSISPTTSL 56
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 137 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 316
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 317 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 496
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -3
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 528 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 349
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 348 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 169
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 168 KKFIP*AQPQAL 133
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -2
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 469 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 290
Query: 158 VESDQA 141
+ SDQA
Sbjct: 289 IVSDQA 272
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -2
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 202 STLLPSPCIQVEEIHSISPTTSL 134
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +3
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 273 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 452
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 453 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 632
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -1
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 664 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 485
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 484 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 305
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 304 KKFIP*AQPQAL 269
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -3
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 605 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 426
Query: 158 VESDQA 141
+ SDQA
Sbjct: 425 IVSDQA 408
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -3
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 338 STLLPSPCIQVEEIHSISPTTSL 270
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +3
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 84 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 263
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 264 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 443
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -2
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 475 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 296
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 295 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 116
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 115 KKFIP*AQPQAL 80
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -1
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 416 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 237
Query: 158 VESDQA 141
+ SDQA
Sbjct: 236 IVSDQA 219
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -1
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 149 STLLPSPCIQVEEIHSISPTTSL 81
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 257 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 436
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 437 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 616
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -3
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 648 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 469
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 468 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 289
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 288 KKFIP*AQPQAL 253
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -2
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 589 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 410
Query: 158 VESDQA 141
+ SDQA
Sbjct: 409 IVSDQA 392
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -2
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 322 STLLPSPCIQVEEIHSISPTTSL 254
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 285 bits (616), Expect = 3e-076
Identities = 103/120 (85%), Positives = 112/120 (93%)
Frame = +3 / +1
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KS
Sbjct: 265 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKS 444
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
WHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDYD +++ CNF
Sbjct: 445 WHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNF 624
Score = 181 bits (389), Expect = 6e-045
Identities = 86/132 (65%), Positives = 97/132 (73%)
Frame = -2 / -2
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 656 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 477
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRS 38
LGLYP PRTCQD SRGFVV * VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+
Sbjct: 476 LGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKW 297
Query: 37 KKFIPYAHPQAL 2
KKFIP A PQAL
Sbjct: 296 KKFIP*AQPQAL 261
Score = 84.5 bits (178), Expect(2) = 4e-021
Identities = 30/66 (45%), Positives = 49/66 (74%)
Frame = -1 / -1
Query: 338 IIVHILCPKVPELVHTDVQPGLHVAVEMHNSSISNLLHADARIVSKSKNMPRFLQRFCCR 159
IIV+IL P V L+H +++P H+++E++N I++ +H + ++SK+KNMPRF+ R CC
Sbjct: 597 IIVYILGPGVSILIHANIKPWFHISIEVNNGCIADFVHTNTGVISKTKNMPRFI*RLCCF 418
Query: 158 VESDQA 141
+ SDQA
Sbjct: 417 IVSDQA 400
Score = 36.8 bits (74), Expect(2) = 4e-021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1 / -1
Query: 71 STFLPPPRIKIEEIHSVCPSTGI 3
ST LP P I++EEIHS+ P+T +
Sbjct: 330 STLLPSPCIQVEEIHSISPTTSL 262
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 244 bits (528), Expect = 4e-064
Identities = 90/107 (84%), Positives = 96/107 (89%)
Frame = +3 / +1
Query: 18 AYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVL 197
AYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KSWHVL
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVL 180
Query: 198 GLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYD 338
GLGYNPSISM+EIRNA V HFNGNMKPWLD MNQ+R WTKY YD
Sbjct: 181 GLGYNPSISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKYXXYD 321
Score = 151 bits (325), Expect = 4e-036
Identities = 70/105 (66%), Positives = 78/105 (74%)
Frame = -2 / -1
Query: 337 S*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE 158
S* Y VQ F+ +SS GF+ PLK T A ISS+L+LGLYP PRTCQD SRGFVV
Sbjct: 320 S*XXYLVQVSRY*FMXISSHGFIFPLK*XTXALRISSILILGLYPRPRTCQDLSRGFVVL 141
Query: 157 *KVIKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIP 23
* VI+PGG+VPSFHNV FSF FCQ* Y SVHFSLL S+ KKFIP
Sbjct: 140 **VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP 6
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 228 bits (493), Expect = 3e-059
Identities = 81/120 (67%), Positives = 96/120 (80%)
Frame = +3 / -3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+++ T YH WQN NE+R LWKLGTLPPGLITFY T PL+K
Sbjct: 762 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDK 583
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNPS+ EI NAAVVH+NGNMKPWL++ M ++R WTKY+ YD +++QCN
Sbjct: 582 SWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQCN 403
Score = 131 bits (281), Expect = 5e-030
Identities = 63/108 (58%), Positives = 67/108 (62%)
Frame = -2 / +2
Query: 325 YFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVI 146
YFVQ L + I S+QGFM PL TTAA IS LGLYP P TCQD S+G+V * VI
Sbjct: 440 YFVQ*GLYFVIASSNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVI 619
Query: 145 KPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQAL 2
PGGSVPSFHN L SF FC Y V RS FIPYA PQAL
Sbjct: 620 NPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQAL 763
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 225 bits (485), Expect = 4e-058
Identities = 83/96 (86%), Positives = 89/96 (92%)
Frame = +3 / -1
Query: 78 YHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVH 257
YHYWQN NENRTLWKLGTLPPGLIT+Y TTKPL+KSWHVLGLGYNPSISM+EIRNAAVVH
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 258 FNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNF 365
FNGNMKPWLDIGMNQ+R WTKYVDYD +I+ CNF
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNF 342
Score = 140 bits (300), Expect = 1e-032
Identities = 66/105 (62%), Positives = 77/105 (73%)
Frame = -2 / +1
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH I S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 310 LQILEIFFQ*PKLHICINSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 489
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVLFSF*FCQ* 83
LGLYP PRTCQD S+G VV * VI+PGG+VPSFHNV FSF FCQ*
Sbjct: 490 LGLYPRPRTCQDLSKGLVVL**VIRPGGNVPSFHNVRFSFRFCQ* 624
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 219 bits (472), Expect = 2e-056
Identities = 79/122 (64%), Positives = 93/122 (76%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL+ WR++ T YH WQN N++R LWKLGTLPPGLITFY T L+K
Sbjct: 89 NACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDK 268
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNP++ EI AAV+H+NGNMKPWLDI + ++RH WTKYV YD CN
Sbjct: 269 SWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCN 448
Query: 363 FA 368
+
Sbjct: 449 IS 454
Score = 128 bits (275), Expect = 3e-029
Identities = 63/108 (58%), Positives = 68/108 (62%)
Frame = -2 / -1
Query: 328 TYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KV 149
TY VQ CL + +SS GF+LPL C TAA IS LGL P PRTCQD S+ V *KV
Sbjct: 414 TYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTCQDLSKTNVR**KV 235
Query: 148 IKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
I PGG VP+FHN L F FC *W V L SRS FIPYAHPQA
Sbjct: 234 ISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHPQA 91
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 219 bits (472), Expect = 2e-056
Identities = 79/122 (64%), Positives = 93/122 (76%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL+ WR++ T YH WQN N++R LWKLGTLPPGLITFY T L+K
Sbjct: 89 NACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDK 268
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
SWHVLGLGYNP++ EI AAV+H+NGNMKPWLDI + ++RH WTKYV YD CN
Sbjct: 269 SWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCN 448
Query: 363 FA 368
+
Sbjct: 449 IS 454
Score = 128 bits (275), Expect = 3e-029
Identities = 63/108 (58%), Positives = 68/108 (62%)
Frame = -2 / -1
Query: 328 TYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KV 149
TY VQ CL + +SS GF+LPL C TAA IS LGL P PRTCQD S+ V *KV
Sbjct: 414 TYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTCQDLSKTNVR**KV 235
Query: 148 IKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
I PGG VP+FHN L F FC *W V L SRS FIPYAHPQA
Sbjct: 234 ISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHPQA 91
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 212 bits (457), Expect = 3e-054
Identities = 76/109 (69%), Positives = 88/109 (80%)
Frame = +3 / +2
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+++ T YH WQN NE+R LWKLGTLPPGLITFY T PL+K
Sbjct: 536 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDK 715
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYV 329
SWHVLGLGYNPS+ EI NAAVVH+NGNMKPWL++ M ++R WTKY+
Sbjct: 716 SWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 862
Score = 131 bits (281), Expect = 5e-030
Identities = 63/108 (58%), Positives = 67/108 (62%)
Frame = -2 / -3
Query: 325 YFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVI 146
YFVQ L + I S+QGFM PL TTAA IS LGLYP P TCQD S+G+V * VI
Sbjct: 858 YFVQ*GLYFVIASSNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVI 679
Query: 145 KPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQAL 2
PGGSVPSFHN L SF FC Y V RS FIPYA PQAL
Sbjct: 678 NPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQAL 535
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 210 bits (452), Expect = 1e-053
Identities = 69/120 (57%), Positives = 97/120 (80%)
Frame = +3 / -1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
+ACGWA+GMN FDL +W++ T +YHYWQ QN +RTLWKLGTLPPGL+TFY T+PL++
Sbjct: 549 DACGWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDR 370
Query: 183 SWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
WH+LGLGY+P++ M+ I + AV+H+NGNMKPWL + MN+++ W KYV+Y ++++CN
Sbjct: 369 RWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCN 190
Score = 109 bits (232), Expect = 3e-023
Identities = 56/108 (51%), Positives = 61/108 (56%)
Frame = -2 / +2
Query: 328 TYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KV 149
TYF Q+ L FI + GFM PL C TA IS M G PSP CQ S G V *KV
Sbjct: 224 TYFSQKDLYLFIASFNHGFMFPL*CKTAPLSISCMSTFGS*PSPSICQRRSSGSVRP*KV 403
Query: 148 IKPGGSVPSFHNVLFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAHPQA 5
KPGG VPSF +VL +F CQ* Y V S +RS FIP AHP A
Sbjct: 404 SKPGGKVPSFQSVLSTFCSCQ**YRLVTLSFFHATRSNTFIPKAHPHA 547
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 197 bits (424), Expect = 9e-050
Identities = 67/118 (56%), Positives = 90/118 (76%)
Frame = +3 / +2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKS 185
ACGWA+GMN FDL +W+ T +YHYWQ QN +RTLWKLGTLPPGL++FY T+PL++
Sbjct: 281 ACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRR 460
Query: 186 WHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 359
WHVLGLGY+ +I + I + AV+HFNGNMKPWL + M +++ +W YV+Y ++QC
Sbjct: 461 WHVLGLGYDLNIDEQLIESGAVIHFNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQC 634
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 190 bits (410), Expect = 8e-048
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +3 / +1
Query: 111 TLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDI 290
TLWKLGTLPPGLITFY TTKPL+KSWHV GLGYNPSISM+EIRNAAVVHFNG MKPWLDI
Sbjct: 4 TLWKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDI 183
Query: 291 GMNQFRHLWTKYVDYDDSYIRQCNF 365
GMNQ+R WTKYVDYD +++ CNF
Sbjct: 184 GMNQYRDTWTKYVDYDMEFVQMCNF 258
Score = 129 bits (277), Expect = 2e-029
Identities = 60/96 (62%), Positives = 71/96 (73%)
Frame = -2 / -1
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S*STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 290 LQILEIFFQ*PKLHICTNSIS*STYLVQVSRY*FMPISSHGFIKPLK*TTAALRISSILI 111
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNV 110
LGLYP P+TCQD SRGFVV *KVI+PGG+VPSFHNV
Sbjct: 110 LGLYPRPKTCQDLSRGFVVL*KVIRPGGNVPSFHNV 3
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 187 bits (403), Expect = 7e-047
Identities = 68/83 (81%), Positives = 76/83 (91%)
Frame = +3 / +1
Query: 117 WKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGM 296
WKLGTLPPGLIT+Y TTKPL+KSWHVLG GYNPSISM+EIRNAAVVHFNGNMKPWLDIGM
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 297 NQFRHLWTKYVDYDDSYIRQCNF 365
NQ+R WTKYVD+D +++ CNF
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMCNF 249
Score = 117 bits (251), Expect = 7e-026
Identities = 56/93 (60%), Positives = 66/93 (70%)
Frame = -2 / -2
Query: 397 LSIIKTFYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLM 218
L I++ F+ KLH S STY VQ F+P+SS GF+ PLK TTAA ISS+L+
Sbjct: 281 LQILEIFFQ*PKLHICTNSISKSTYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILI 102
Query: 217 LGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSF 119
LGLYP PRTCQD SRGFVV * VI+PGG+VPSF
Sbjct: 101 LGLYPKPRTCQDLSRGFVVL**VIRPGGNVPSF 3
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 179 bits (386), Expect = 2e-044
Identities = 59/107 (55%), Positives = 85/107 (79%)
Frame = +3 / -3
Query: 42 LDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSI 221
L +W++ T +YHYWQ QN +RTLWKLGTLPPGL+TFY T+PL++ WH+LGLGY+P++
Sbjct: 820 LVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNV 641
Query: 222 SMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
M+ I + AV+H+NGNMKPWL + MN+++ W KYV+Y ++++CN
Sbjct: 640 DMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCN 500
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 125 bits (268), Expect(2) = 1e-038
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = +3 / +1
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEK 182
NACGWAYGMN FDL W+++ T YH WQN NE+R LWKLGTLPPGLITFY T PL+K
Sbjct: 544 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDK 723
Query: 183 SWHVLG 200
SW G
Sbjct: 724 SWACAG 741
Score = 54.7 bits (113), Expect(2) = 1e-038
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3 / +2
Query: 189 HVLGLGYNPSISMEEIRNAAVVHFNGN 269
HVLGLGYNPS+ EI NAAVVH+NGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 158 bits (340), Expect = 4e-038
Identities = 58/70 (82%), Positives = 64/70 (91%)
Frame = +3 / +3
Query: 156 YSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDY 335
Y TTKPL+KSWHVLGLGYNPSISM+EIRNAAVVHFNGNMKPWLDIGMNQ+R WTKYVDY
Sbjct: 3 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 182
Query: 336 DDSYIRQCNF 365
D +++ CNF
Sbjct: 183 DMEFVQMCNF 212
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 142 bits (305), Expect = 2e-033
Identities = 49/100 (49%), Positives = 69/100 (69%)
Frame = +3 / +2
Query: 63 KCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRN 242
K T Y +N N N LW++GTLPP LI F P++ SWH+LGLGY P +++ +++
Sbjct: 11 KETYHYWLKKNLNSNLRLWRMGTLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQS 190
Query: 243 AAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
AAV+H+NG KPWLDI ++ R LW KYVD+ D +I++CN
Sbjct: 191 AAVIHYNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRCN 310
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 142 bits (304), Expect = 3e-033
Identities = 49/100 (49%), Positives = 69/100 (69%)
Frame = +3 / +3
Query: 63 KCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRN 242
K T Y +N N N LW++GTLPP LI F P++ SWH+LGLGY P +++ +++
Sbjct: 195 KETYHYWLKKNLNSNLRLWRMGTLPPALIAFNGLVHPIDPSWHMLGLGYQPRTNLDSVQS 374
Query: 243 AAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
AAV+H+NG KPWLDI ++ R LW KYVD+ D +I++CN
Sbjct: 375 AAVIHYNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRCN 494
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 141 bits (303), Expect = 5e-033
Identities = 50/103 (48%), Positives = 66/103 (64%)
Frame = +3 / -2
Query: 69 TEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAA 248
T Y +N N N TLW+LGTLPP LI F P++ SWH+LGLGY P + +R AA
Sbjct: 652 TYHYWLKENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQPETDLNNVRKAA 473
Query: 249 VVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAPP* 377
V+H+NG KPWLDI + R WTKY++Y + +I+ C+ P*
Sbjct: 472 VIHYNGQAKPWLDIAFPELRPFWTKYINYSNEFIKNCHILEP* 344
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 140 bits (300), Expect = 1e-032
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = +3 / +2
Query: 12 GWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWH 191
GWA+GMN FDL +W++ T +YHYWQ QN +RTLWKLGTLPPGL+TFY T+PL++ WH
Sbjct: 452 GWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWH 631
Query: 192 VLGLGYNPSISMEEI 236
+LGLGY+P++ M+ I
Sbjct: 632 ILGLGYDPNVDMQLI 676
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 110 bits (235), Expect(2) = 7e-031
Identities = 39/89 (43%), Positives = 59/89 (66%)
Frame = +3 / +3
Query: 96 QNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMK 275
QN W+ GTLP LITFY+ T LE SW +GLG++ I +I + V+H+NGN+K
Sbjct: 195 QNRYNIPWRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLK 374
Query: 276 PWLDIGMNQFRHLWTKYVDYDDSYIRQCN 362
PWL+IG+N+++ W KY+ + ++ +CN
Sbjct: 375 PWLEIGINKYKPYWAKYLKQEGQFMLECN 461
Score = 43.7 bits (89), Expect(2) = 7e-031
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / +3
Query: 3 NACGWAYGMNFFDLDSWRREKCTEQYHYW 89
NAC W G+N DL WR++ T+ Y W
Sbjct: 99 NACAWMSGLNIIDLQQWRKQDLTKVYRRW 185
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 132 bits (283), Expect = 3e-030
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = +3 / +3
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFY 158
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+Y
Sbjct: 645 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYY 797
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 129 bits (276), Expect = 2e-029
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +3 / -2
Query: 6 ACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITF 155
ACGWAYGMNFF LD+WRREKCTE+YHYWQN NENRTLWKLGTLPPGLIT+
Sbjct: 151 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 2
>gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074G08, mRNA sequence
Length = 317
Score = 122 bits (261), Expect = 3e-027
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3 / +2
Query: 129 TLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFR 308
TLPP LI F P++ SWH+LGLGY P +++ +++AAV+H+NG KPWLDI ++ R
Sbjct: 2 TLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKPWLDIAFHELR 181
Query: 309 HLWTKYVDYDDSYIRQCN 362
LW KYVD+ D +I++CN
Sbjct: 182 PLWAKYVDFSDEFIKRCN 235
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 102 bits (217), Expect = 3e-021
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = +3 / +1
Query: 126 GTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQF 305
GTLP LITFY+ T LE SW +GLG++ I +I + V+H+NGN+KPWL+IG+N++
Sbjct: 4 GTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKY 183
Query: 306 RHLWTKYVDYDDSYIRQCN 362
+ W KY+ + ++ +CN
Sbjct: 184 KPYWAKYLKQEGQFMLECN 240
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 412,666,925
Number of Sequences: 355925
Number of extensions: 6031837
Number of successful extensions: 38845
Number of sequences better than 1.0e-020: 33
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10567858420
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)