TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.21
(693 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response R... 139 1e-066
gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus adde... 139 3e-066
gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pin... 141 8e-063
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 149 1e-062
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 126 4e-059
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 126 4e-059
gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus m... 140 1e-056
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 120 2e-055
gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C fo... 126 4e-055
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 120 9e-054
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 122 8e-053
gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine ro... 147 4e-052
gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus cal... 128 3e-050
gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2... 134 8e-050
gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus adde... 140 7e-045
gb|CX651881.1|CX651881 COLD1_55_A04.g1_A029 Root cold Pinus... 98 1e-043
gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control ... 102 2e-042
gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus adde... 127 3e-041
gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control P... 120 1e-040
gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus adde... 74 8e-039
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 122 1e-038
gb|CR394381.1|CR394381 CR394381 RN Pinus pinaster cDNA clon... 115 1e-038
gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control P... 126 1e-038
gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciat... 138 1e-038
gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control ... 138 4e-038
gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered lob... 126 6e-037
gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clon... 128 2e-036
gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip libra... 87 6e-036
dbj|BD224351.1| Materials and methods for the modification ... 125 3e-035
dbj|BD224414.1| Materials and methods for the modification ... 125 3e-035
gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus adde... 126 5e-035
gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch... 126 4e-033
gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C fo... 120 6e-033
gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clon... 122 6e-033
gb|DR385449.1|DR385449 RTHG1_8_F01.g1_A029 Roots plus added... 67 3e-032
gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo li... 120 5e-032
gb|CO199490.1|CO199490 GEO2_1_C06.g1_A032 Root gravitropism... 92 5e-032
gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo li... 120 9e-032
gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus... 133 1e-031
gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered lob... 113 2e-031
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 122 4e-029
gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus ad... 126 1e-028
gb|CF390174.1|CF390174 RTDR2_12_E07.g1_A021 Loblolly pine r... 124 7e-028
gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo li... 123 1e-027
gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo li... 120 1e-027
gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo li... 73 1e-027
gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciat... 122 3e-027
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 122 4e-027
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 122 4e-027
gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus ad... 120 9e-027
gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus adde... 114 8e-025
gb|DR387499.1|DR387499 RTHG1_22_E08.b1_A029 Roots plus adde... 113 1e-024
gb|CF478204.1|CF478204 RTWW3_19_D01.g1_A022 Well-watered lo... 112 3e-024
gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pin... 110 1e-023
gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus... 110 1e-023
gb|BI397619.1|BI397619 NXPV_102_C02_F NXPV (Nsf Xylem Plani... 98 1e-023
gb|BE657071.1|BE657071 NXCI_042_A09_F NXCI (Nsf Xylem Compr... 105 5e-023
gb|BG318692.1|BG318692 NXPV_015_G08_F NXPV (Nsf Xylem Plani... 94 2e-022
gb|BI643956.1|BI643956 NXPV_133_B02_F NXPV (Nsf Xylem Plani... 94 2e-022
gb|DR080995.1|DR080995 RTFEPL1_26_D08.g1_A029 Roots plus ad... 105 3e-022
>gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F01_A033 5', mRNA sequence
Length = 850
Score = 139 bits (299), Expect(2) = 1e-066
Identities = 59/132 (44%), Positives = 80/132 (60%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH V Y Y+G + IGI V VP+ LD +A
Sbjct: 351 GNSATEPYIVTHNMLLAHRAVVKLYRTKYQGIQKGSIGIVLVVSWVVPFSKSKLDQRAAR 530
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+ +GWF++P+V G YP S+R L+K RLP FT E ++L GS+D +G NYYT++++
Sbjct: 531 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTT 710
Query: 651 HIDISPKYLGRD 686
P L D
Sbjct: 711 SNPNPPNPLKTD 746
Score = 133 bits (286), Expect(2) = 1e-066
Identities = 54/89 (60%), Positives = 60/89 (67%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y IN L NGIEP+VTLFHWD PQAL D YGGF R+V+D++ FA+ CF FGD VK
Sbjct: 66 YNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVK 245
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
W T NEP FS Y GI APGRCS G
Sbjct: 246 YWVTVNEPLVFSLGGYDLGIHAPGRCSAG 332
Score = 73.5 bits (154), Expect(2) = 8e-025
Identities = 40/89 (44%), Positives = 48/89 (53%)
Frame = -3 / -1
Query: 268 PGEHRPGAKIPVP*EKEENVCGSLKVNQFFTTSPKCTKHTLAKSV*SFTIXXXXXXXXXS 89
P E RPGA +P * E GS V Q+FT SPK KH+ A + S T S
Sbjct: 331 PAEQRPGA*MPKS*PPSEKTSGSFTVTQYFTRSPKARKHSSANMLKSSTTLLLRNPPYSS 152
Query: 88 TSA*GVSQWKSVTYGSMPFSFNKLMSLL* 2
+ A G+SQ SVT GS+PF + LM LL*
Sbjct: 151 SRACGMSQ*NSVTKGSIPFLSSSLMKLL* 65
Score = 60.2 bits (125), Expect(2) = 8e-025
Identities = 36/88 (40%), Positives = 47/88 (53%)
Frame = -3 / -1
Query: 553 LINDLMEKG*SPRTTGSMNHPRL*SMDLSWAWSSRNILSYGTRPITFFSIPICASLLPL* 374
L N L E G P T GS NHP L S L A S GT +T ++P+ +P
Sbjct: 613 LTNLLTESGYFPNTRGSKNHPILKSNALRAAR*SSLDFENGTTQLTTRTMPMEPF*IPWY 434
Query: 373 CLLYSWTVSA*ARRRLWATMYGSVSEFP 290
+LY++T + AR LW T+ GSV+EFP
Sbjct: 433 LVLYNFTTALCARSILWVTI*GSVAEFP 350
>gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_21_D07_A029 5', mRNA sequence
Length = 831
Score = 139 bits (298), Expect(2) = 3e-066
Identities = 58/132 (43%), Positives = 81/132 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI + VP+ LD +A
Sbjct: 308 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 487
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+ +GWF++P+V G YP S+R L+K RLP FT E ++L GS+D +G NYYT++++
Sbjct: 488 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTT 667
Query: 651 HIDISPKYLGRD 686
P L D
Sbjct: 668 SNPNPPNPLKTD 703
Score = 133 bits (284), Expect(2) = 3e-066
Identities = 54/89 (60%), Positives = 60/89 (67%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L NGIEP+VTLFHWD PQAL D YGGF R+V+D++ FA+ CF FGD VK
Sbjct: 23 YNNLINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVK 202
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
W T NEP FS Y I APGRCS G
Sbjct: 203 YWVTVNEPLVFSVGGYDLAIHAPGRCSAG 289
Score = 68.9 bits (144), Expect(2) = 7e-023
Identities = 39/89 (43%), Positives = 47/89 (52%)
Frame = -3 / -1
Query: 268 PGEHRPGAKIPVP*EKEENVCGSLKVNQFFTTSPKCTKHTLAKSV*SFTIXXXXXXXXXS 89
P E RPGA + * E GS V Q+FT SPK KH+ A + S T S
Sbjct: 288 PAEQRPGA*MAKS*PPTEKTSGSFTVTQYFTRSPKARKHSSANMLKSSTTLLLRNPPYSS 109
Query: 88 TSA*GVSQWKSVTYGSMPFSFNKLMSLL* 2
+ A G+SQ SVT GS+PF + LM LL*
Sbjct: 108 SRACGMSQ*NSVTKGSIPFLSSSLMRLL* 22
Score = 58.3 bits (121), Expect(2) = 7e-023
Identities = 35/88 (39%), Positives = 47/88 (53%)
Frame = -3 / -1
Query: 553 LINDLMEKG*SPRTTGSMNHPRL*SMDLSWAWSSRNILSYGTRPITFFSIPICASLLPL* 374
L N L E G P T GS NHP L S L A S GT ++ ++P+ +P
Sbjct: 570 LTNLLTESGYFPNTRGSKNHPILKSNALRAAR*SSLDFENGTTQLSTRTMPMEPF*IPWY 391
Query: 373 CLLYSWTVSA*ARRRLWATMYGSVSEFP 290
+LY++T + AR LW T+ GSV+EFP
Sbjct: 390 LVLYNFTTALCARSILWVTI*GSVAEFP 307
>gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 5', mRNA sequence
Length = 873
Score = 141 bits (302), Expect(2) = 8e-063
Identities = 55/123 (44%), Positives = 84/123 (68%)
Frame = +3 / +1
Query: 285 PTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQA 464
P GNS TEPYIVAHN+L +HA+TV Y +Y+ + +IG+ +V+ P + D A
Sbjct: 337 PAGNSATEPYIVAHNVLLSHAKTVDIYRTNYKAKQGGRIGVALDVIWYEPMSDSPEDIAA 516
Query: 465 QERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
+R+ D+ LGWFM+P+V GDYP SMR + +RLP F+ +E ++ GS D +GIN+YT+ +
Sbjct: 517 TQRAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTTYY 696
Query: 645 SKH 653
+++
Sbjct: 697 ARN 705
Score = 119 bits (255), Expect(2) = 8e-063
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = +3 / +1
Query: 30 ENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQ 209
+ GIEPYVTL+HWD PQAL D+Y G+L +I++DY FA+ CF FGD VKNW TFNEP
Sbjct: 79 KTGIEPYVTLYHWDLPQALEDAYKGWLSSKIIEDYAKFAETCFEKFGDRVKNWMTFNEPH 258
Query: 210 TFSSFSYGTGIFAP 251
TF+ Y G+ AP
Sbjct: 259 TFAIQGYDIGLSAP 300
Score = 75.8 bits (159), Expect(2) = 1e-022
Identities = 44/97 (45%), Positives = 54/97 (55%)
Frame = -3 / -2
Query: 541 LMEKG*SPRTTGSMNHPRL*SMDLSWAWSSRNILSYGTRPITFFSIPICASLLPL*CLLY 362
L++ G*SP+T+GSMNHP S L A S G+ IT + PI L* +LY
Sbjct: 593 LIDAG*SPKTSGSMNHPNWKSWALCVAAISSGESDIGSYQITSKATPILPPCFAL*FVLY 414
Query: 361 SWTVSA*ARRRLWATMYGSVSEFPVGLAHFCPGEHRP 251
TV A* R L AT+ GSV+EFP G + EHRP
Sbjct: 413 MSTVLA*ERSTL*ATI*GSVAEFPAGQKRWSRIEHRP 303
Score = 50.6 bits (104), Expect(2) = 1e-022
Identities = 34/82 (41%), Positives = 42/82 (51%)
Frame = -3 / -2
Query: 250 GAKIPVP*EKEENVCGSLKVNQFFTTSPKCTKHTLAKSV*SFTIXXXXXXXXXSTSA*GV 71
GA+ P+ * NV GSL V QFFT SP +K A *S I S+SA G
Sbjct: 299 GAERPMS*P*IANV*GSLNVIQFFTLSPNFSKQVSANFA*SSIILELSQPL*ASSSACGR 120
Query: 70 SQWKSVTYGSMPFSFNKLMSLL 5
SQ VTYGS+P ++ L+
Sbjct: 119 SQ*YRVTYGSIPVFQERVYELV 54
>gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 5', mRNA
sequence
Length = 685
Score = 149 bits (319), Expect(2) = 1e-062
Identities = 58/119 (48%), Positives = 79/119 (66%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI V VPY N LD +A +
Sbjct: 231 GNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQ 410
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
R+ID+ +GWF++P+ G YP SMRSL+ RLP F+ +E + L GS+D +G NYY++ F+
Sbjct: 411 RAIDFRIGWFLDPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYSTDFT 587
Score = 111 bits (237), Expect(2) = 1e-062
Identities = 42/70 (60%), Positives = 49/70 (70%)
Frame = +3 / +3
Query: 60 FHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTG 239
+HWD PQAL D YGGF R+V+D+ FA+ CF FGD VK W T NEP TFS + Y G
Sbjct: 3 YHWDMPQALEDEYGGFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLG 182
Query: 240 IFAPGRCSPG 269
+ APGRCSPG
Sbjct: 183 LHAPGRCSPG 212
>gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_A01_A029 5', mRNA sequence
Length = 788
Score = 126 bits (270), Expect(2) = 4e-059
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 59 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 238
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 239 YWMTFNEPRVVAALGYDNGIFAPGRCS 319
Score = 122 bits (260), Expect(2) = 4e-059
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 344 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 523
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 524 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 697
>gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 5', mRNA sequence
Length = 739
Score = 126 bits (270), Expect(2) = 4e-059
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 46 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 225
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 226 YWMTFNEPRVVAALGYDNGIFAPGRCS 306
Score = 122 bits (260), Expect(2) = 4e-059
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 331 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 510
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 511 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 684
>gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_A07_A029 5', mRNA sequence
Length = 701
Score = 140 bits (300), Expect(2) = 1e-056
Identities = 58/132 (43%), Positives = 82/132 (62%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI + VP+ LD +A
Sbjct: 223 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 402
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+ +GWF++P+V G YP S+R L+K RLP FT E ++L GS+D +G NYYT++++
Sbjct: 403 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTT 582
Query: 651 HIDISPKYLGRD 686
+ P L D
Sbjct: 583 NNPNPPNPLKTD 618
Score = 100 bits (212), Expect(2) = 1e-056
Identities = 40/68 (58%), Positives = 45/68 (66%)
Frame = +3 / +1
Query: 66 WDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIF 245
WD PQAL D YGGF R+V+D++ FA+ CF FGD VK W T NEP FS Y GI
Sbjct: 1 WDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIH 180
Query: 246 APGRCSPG 269
APGRCS G
Sbjct: 181 APGRCSAG 204
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 120 bits (257), Expect(2) = 2e-055
Identities = 50/118 (42%), Positives = 72/118 (61%)
Frame = +3 / -2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 654 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 475
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT + + + GS D +G+N YT+ +
Sbjct: 474 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKKQSQMVKGSIDYLGVNQYTAYY 301
Score = 116 bits (247), Expect(2) = 2e-055
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +3 / -2
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK W TFNEP+
Sbjct: 906 GITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVV 727
Query: 216 SSFSYGTGIFAPGRCS 263
++ Y GIFAPGRCS
Sbjct: 726 AALGYDNGIFAPGRCS 679
>gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 5', mRNA sequence
Length = 726
Score = 126 bits (270), Expect(2) = 4e-055
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 29 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 208
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 209 YWMTFNEPRVVAALGYDNGIFAPGRCS 289
Score = 108 bits (231), Expect(2) = 4e-055
Identities = 46/107 (42%), Positives = 65/107 (60%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 314 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 493
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYD 611
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D
Sbjct: 494 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSID 634
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 120 bits (257), Expect(2) = 9e-054
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 555 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 734
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 735 YWATVNEPNLFVPLGYTVGIFPPTRCA 815
Score = 110 bits (234), Expect(2) = 9e-054
Identities = 45/117 (38%), Positives = 70/117 (59%)
Frame = +3 / +3
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERS 476
S EPY+ AH++L AHA V +Y + Y+ + IG+ + P +N + A +R
Sbjct: 855 SSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERSAVDRI 1034
Query: 477 IDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
+ +NL WF++P+V GDYP MR + RLP + + KL GS+D MGIN+YT+ ++
Sbjct: 1035 LSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYA 1205
>gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 3', mRNA sequence
Length = 696
Score = 122 bits (260), Expect(2) = 8e-053
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / -3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 442 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 263
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 262 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 89
Score = 105 bits (224), Expect(2) = 8e-053
Identities = 38/69 (55%), Positives = 49/69 (71%)
Frame = +3 / -3
Query: 57 LFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGT 236
L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK W TFNEP+ ++ Y
Sbjct: 673 LYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDN 494
Query: 237 GIFAPGRCS 263
GIFAPGRCS
Sbjct: 493 GIFAPGRCS 467
>gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 5', mRNA
sequence
Length = 741
Score = 147 bits (315), Expect(2) = 4e-052
Identities = 58/119 (48%), Positives = 78/119 (65%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI V VPY N LD +A +
Sbjct: 173 GNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQ 352
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
R+ID+ +GWF+ P+ G YP SMRSL+ RLP F+ +E + L GS+D +G NYY++ F+
Sbjct: 353 RAIDFRIGWFLYPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYSTDFT 529
Score = 78.0 bits (164), Expect(2) = 4e-052
Identities = 30/51 (58%), Positives = 36/51 (70%)
Frame = +3 / +2
Query: 117 RIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
R+V+D+ FA+ CF FGD VK W T NEP TFS + Y G+ APGRCSPG
Sbjct: 2 RVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGLHAPGRCSPG 154
>gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 5', mRNA sequence
Length = 784
Score = 128 bits (274), Expect(2) = 3e-050
Identities = 48/87 (55%), Positives = 60/87 (68%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+AL +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 232 YNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 411
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 412 YWMTFNEPRVVAALGYDNGIFAPGRCS 492
Score = 90.4 bits (191), Expect(2) = 3e-050
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 517 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 696
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLI 551
RS D+++GWF+ P+ G YP SM ++
Sbjct: 697 RSRDFHIGWFLHPITYGKYPDSMVEIV 777
>gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 5', mRNA sequence
Length = 729
Score = 134 bits (287), Expect(3) = 8e-050
Identities = 53/119 (44%), Positives = 72/119 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
G+S TEPYIV HN+L AH+ V Y Y+G + IGI VP+ D A +
Sbjct: 373 GDSATEPYIVGHNMLLAHSAAVKIYKTKYQGKQKGSIGIVLTASWMVPFSESSQDQMATQ 552
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
R+ID+ +GW +EP+ G YP SMR L+ RLP FT E +L GS+D +G NYY++ F+
Sbjct: 553 RAIDFRIGWILEPLTSGKYPDSMRKLVGARLPRFTSQEARELKGSFDFLGYNYYSTYFT 729
Score = 66.6 bits (139), Expect(3) = 8e-050
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIV 125
Y LIN L N IEP++TLFHWD PQAL D Y GFL ++V
Sbjct: 170 YNNLINELLNNDIEPFITLFHWDLPQALEDEYMGFLSQKVV 292
Score = 35.0 bits (70), Expect(3) = 8e-050
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 213 FSSFSYGTGIFAPGRCSPG 269
FS F Y G APGRCSPG
Sbjct: 298 FSYFGYDVGADAPGRCSPG 354
>gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_B07_A029 3', mRNA sequence
Length = 692
Score = 140 bits (300), Expect(2) = 7e-045
Identities = 56/118 (47%), Positives = 78/118 (66%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYI AHN+LRAHA V Y K Y+ +++ IGI R P N D A +
Sbjct: 166 GNSSTEPYIAAHNILRAHASAVQLYRKEYQADQEGLIGIVMACAWREPLLNNSQDISAVQ 345
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
R +D+++GW+++P+V G+YP SM+ L+ RLP T D EKL GSYD +G+NYY++ +
Sbjct: 346 RLLDFSIGWYLDPIVFGEYPTSMQELVGTRLPIITLDLSEKLRGSYDFIGVNYYSTAY 519
Score = 60.6 bits (126), Expect(2) = 7e-045
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +3 / +1
Query: 123 VKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+ DYT +A+ CF +FG VK W TFNEP F Y G + P RCS
Sbjct: 1 IDDYTLYAEACFKNFGGRVKYWSTFNEPNIFVPEGYDAGKYPPARCS 141
>gb|CX651881.1|CX651881 COLD1_55_A04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_55_A04_A029 5', mRNA sequence
Length = 533
Score = 97.7 bits (207), Expect(3) = 1e-043
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = +3 / +2
Query: 399 IGIEKNVMGRVPYDNMFLDDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTD 578
IGI + M P ++ D A +R++D+ LGWFM+P+ GDYP SMR L+ DRLP F++
Sbjct: 296 IGITLDSMWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSN 475
Query: 579 DEKEKLVGSYDIMGINYYT 635
D+ + L GS+D +GIN+YT
Sbjct: 476 DQSKLLRGSFDFVGINHYT 532
Score = 70.7 bits (148), Expect(3) = 1e-043
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +3 / +2
Query: 108 LDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
++ +I+ D+ +A+ CF FGD VK+W TFNEP+ S Y GI APGRCS
Sbjct: 8 VESQIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCS 163
Score = 46.4 bits (95), Expect(3) = 1e-043
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYR 380
GNS TEPYIVAHNLL +HA V Y + ++
Sbjct: 191 GNSSTEPYIVAHNLLLSHAAAVDIYRQQFK 280
>gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_A06_A029 3', mRNA sequence
Length = 596
Score = 102 bits (218), Expect(3) = 2e-042
Identities = 43/84 (51%), Positives = 52/84 (61%)
Frame = +3 / -1
Query: 129 DYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTE 308
D+ +A+ CF FGD VK+W TFNEP+ S Y GI APGRCS GNS TE
Sbjct: 410 DFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCSILGHLVCKAGNSSTE 231
Query: 309 PYIVAHNLLRAHAETVHEYNKHYR 380
PYIVAHNLL +HA V Y + ++
Sbjct: 230 PYIVAHNLLLSHAAAVDIYRQQFK 159
Score = 54.7 bits (113), Expect(3) = 2e-042
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSY 98
Y LI+ L GI+PYVTL+HWD PQAL D+Y
Sbjct: 514 YNALIDTLLAKGIDPYVTLYHWDLPQALEDAY 419
Score = 53.3 bits (110), Expect(3) = 2e-042
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / -1
Query: 399 IGIEKNVMGRVPYDNMFLDDQAQERSIDYNLGWFMEPVVRGDYPFSM 539
IGI + M P ++ D A +R++D+ LGWFM+P+ GDYP SM
Sbjct: 143 IGITLDSMWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASM 3
>gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 5', mRNA sequence
Length = 711
Score = 127 bits (271), Expect(2) = 3e-041
Identities = 51/134 (38%), Positives = 80/134 (59%)
Frame = +3 / +2
Query: 288 TGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQ 467
+GNS EPYIV H++L +H V Y K+Y+ + IG+ V +P N D A
Sbjct: 185 SGNSTVEPYIVGHHVLLSHIAAVELYRKNYQAKQKGWIGLVILVNRMIPLTNKSTDVAAT 364
Query: 468 ERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
+R+ D+ +GWF++P V GDYP SMR+++ RLP FT ++ +KL GS D +G+N+Y + +
Sbjct: 365 QRANDFKVGWFLDPFVSGDYPGSMRNIVGSRLPSFTKEQTQKLQGSLDFIGVNHYFTIYC 544
Query: 648 KHIDISPKYLGRDH 689
+ + RD+
Sbjct: 545 FDVPRKGELTSRDY 586
Score = 62.0 bits (129), Expect(2) = 3e-041
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +3 / +2
Query: 126 KDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+D+ +A VCF FGD VK W TFNEP F+ Y G F P RCS
Sbjct: 26 EDFKGYADVCFREFGDRVKYWSTFNEPNIFAIAGYDQGFFPP*RCS 163
>gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 5', mRNA sequence
Length = 792
Score = 120 bits (257), Expect(2) = 1e-040
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 264 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 443
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 444 YWATVNEPNLFVPLGYTVGIFPPTRCA 524
Score = 66.1 bits (138), Expect(2) = 1e-040
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3 / +3
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERS 476
S EPY+ AH++L AHA V +Y + Y+ + IG+ + P +N + A +R
Sbjct: 564 SSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERLAVDRI 743
Query: 477 IDYNLGWFMEPVVRGD 524
+ +NL WF++P+V GD
Sbjct: 744 LSFNLRWFLDPIVFGD 791
>gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 5', mRNA sequence
Length = 742
Score = 74.4 bits (156), Expect(3) = 8e-039
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI + VP+ LD +A
Sbjct: 135 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 314
Query: 471 RSIDYNLGWF 500
R+ D+ +GW+
Sbjct: 315 RAFDFRIGWY 344
Score = 70.3 bits (147), Expect(3) = 8e-039
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3 / +3
Query: 498 FMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSKHIDISPKYL 677
F++P+V G YP S+R L+K RLP FT E ++L GS+D +G NYYT++++ + P L
Sbjct: 378 FLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTTNNPNPPNPL 557
Query: 678 GRD 686
D
Sbjct: 558 KTD 566
Score = 54.2 bits (112), Expect(3) = 8e-039
Identities = 23/38 (60%), Positives = 23/38 (60%)
Frame = +3 / +3
Query: 156 FVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
F FGD VK W T NEP FS Y GI APGRCS G
Sbjct: 3 FRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCSAG 116
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 122 bits (260), Expect(2) = 1e-038
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / -2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 665 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 486
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 485 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 312
Score = 58.3 bits (121), Expect(2) = 1e-038
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +3 / -2
Query: 165 FGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
FGD VK W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 788 FGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 690
>gb|CR394381.1|CR394381 CR394381 RN Pinus pinaster cDNA clone RN78E02, mRNA sequence
Length = 461
Score = 115 bits (245), Expect(2) = 1e-038
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI V VP+ LD +A
Sbjct: 168 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVVSWMVPFSKSKLDQRAAR 347
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDE 584
R+ D+ +GWF++P+V G YP S+ L+K RLP FTD E
Sbjct: 348 RAFDFRIGWFLDPLVLGKYPDSVTRLVKSRLPQFTDKE 461
Score = 65.2 bits (136), Expect(2) = 1e-038
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = +3 / +3
Query: 129 DYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
D++ FA+ CF FGD VK W T NEP FS Y G+ APGRCS G
Sbjct: 9 DFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGVHAPGRCSAG 149
>gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_A11_A029 5', mRNA sequence
Length = 860
Score = 126 bits (270), Expect(2) = 1e-038
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 421 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 600
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 601 YWMTFNEPRVVAALGYDNGIFAPGRCS 681
Score = 53.3 bits (110), Expect(2) = 1e-038
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDN 443
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N
Sbjct: 706 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTN 858
>gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP057G03, mRNA sequence
Length = 673
Score = 138 bits (295), Expect(2) = 1e-038
Identities = 53/89 (59%), Positives = 63/89 (70%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +NG+EP+VTL+HWD PQAL D YGGF ++V D+ F++ CF FGD VK
Sbjct: 321 YNNLINELLKNGVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVK 500
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
W T NEP FS FSY G+ APGRCSPG
Sbjct: 501 YWVTVNEPLIFSYFSYDVGLHAPGRCSPG 587
Score = 41.8 bits (85), Expect(2) = 1e-038
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETV 356
GNS TEPYIVAHN+L AH+ V
Sbjct: 605 GNSATEPYIVAHNMLLAHSTAV 670
>gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_E11_A029 5', mRNA sequence
Length = 683
Score = 138 bits (295), Expect(2) = 4e-038
Identities = 55/85 (64%), Positives = 64/85 (75%)
Frame = +3 / +3
Query: 12 LINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWF 191
LIN L +GIEPYVTL+H+D PQ+L D YGG+L +IV D+T FA VCFV FGD V+NW
Sbjct: 327 LINELVYHGIEPYVTLYHFDLPQSLQDEYGGWLSRQIVDDFTVFANVCFVEFGDRVRNWM 506
Query: 192 TFNEPQTFSSFSYGTGIFAPGRCSP 266
TFNEP FS YG+ IFAP RCSP
Sbjct: 507 TFNEPNFFSMSGYGSDIFAPQRCSP 581
Score = 40.5 bits (82), Expect(2) = 4e-038
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNK 371
GNS EPYIV HN+L AHA V Y +
Sbjct: 603 GNSSVEPYIVGHNVLLAHAAVVELYRQ 683
>gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 5', mRNA sequence
Length = 735
Score = 126 bits (270), Expect(2) = 6e-037
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 359 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 538
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 539 YWMTFNEPRVVAALGYDNGIFAPGRCS 619
Score = 47.8 bits (98), Expect(2) = 6e-037
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYR 380
GNS TEPYIVAHNLL +HA V Y + Y+
Sbjct: 644 GNSATEPYIVAHNLLLSHATAVKIYREKYQ 733
>gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clone RS39F11, mRNA sequence
Length = 388
Score = 128 bits (274), Expect(2) = 2e-036
Identities = 48/87 (55%), Positives = 60/87 (68%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+AL +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 19 YNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 198
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 199 YWMTFNEPRVVAALGYDNGIFAPGRCS 279
Score = 44.6 bits (91), Expect(2) = 2e-036
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNK 371
GNS TEPYIVAHNLL +HA V Y +
Sbjct: 304 GNSATEPYIVAHNLLLSHATAVKIYRE 384
>gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54D07, mRNA sequence
Length = 432
Score = 87.2 bits (184), Expect(2) = 6e-036
Identities = 32/55 (58%), Positives = 39/55 (70%)
Frame = +3 / +1
Query: 99 GGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
GG L+ R+V+DY FA+ CF FGD VK W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 1 GGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 165
Score = 84.0 bits (177), Expect(2) = 6e-036
Identities = 35/80 (43%), Positives = 48/80 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 190 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 369
Query: 471 RSIDYNLGWFMEPVVRGDYP 530
RS D+++GWF+ P+ YP
Sbjct: 370 RSRDFHIGWFLHPITXXKYP 429
>dbj|BD224351.1| Materials and methods for the modification of plant lignin content
Length = 463
Score = 125 bits (268), Expect(2) = 3e-035
Identities = 47/78 (60%), Positives = 56/78 (71%)
Frame = +3 / +2
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
G+EP+VTL+HWD PQAL D YGGF ++V D+ F++ CF FGD VK W T NEP F
Sbjct: 119 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 298
Query: 216 SSFSYGTGIFAPGRCSPG 269
S FSY G+ APGRCSPG
Sbjct: 299 SYFSYDVGLHAPGRCSPG 352
Score = 43.2 bits (88), Expect(2) = 3e-035
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRG 383
GNS TEPYIVAHN+L AH+ V Y G
Sbjct: 371 GNSATEPYIVAHNMLLAHSTAVKNI*HKYPG 463
>dbj|BD224414.1| Materials and methods for the modification of plant lignin content
Length = 424
Score = 125 bits (268), Expect(2) = 3e-035
Identities = 47/78 (60%), Positives = 56/78 (71%)
Frame = +3 / +2
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
G+EP+VTL+HWD PQAL D YGGF ++V D+ F++ CF FGD VK W T NEP F
Sbjct: 80 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 259
Query: 216 SSFSYGTGIFAPGRCSPG 269
S FSY G+ APGRCSPG
Sbjct: 260 SYFSYDVGLHAPGRCSPG 313
Score = 43.2 bits (88), Expect(2) = 3e-035
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRG 383
GNS TEPYIVAHN+L AH+ V Y G
Sbjct: 332 GNSATEPYIVAHNMLLAHSTAVKNI*HKYPG 424
>gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_E03_A029 3', mRNA sequence
Length = 774
Score = 126 bits (270), Expect(2) = 5e-035
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / -2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 350 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 171
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 170 YWMTFNEPRVVAALGYDNGIFAPGRCS 90
Score = 41.4 bits (84), Expect(2) = 5e-035
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -2
Query: 291 GNSLTEPYIVAHNLLRAHA 347
GNS TEPYIVAHNLL +HA
Sbjct: 65 GNSATEPYIVAHNLLLSHA 9
>gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 5', mRNA sequence
Length = 448
Score = 126 bits (270), Expect(2) = 4e-033
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 114 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 293
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 294 YWMTFNEPRVVAALGYDNGIFAPGRCS 374
Score = 35.0 bits (70), Expect(2) = 4e-033
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3 / +3
Query: 288 TGNSLTEPYIVAHNLL 335
TGNS TEPYIVAH LL
Sbjct: 396 TGNSATEPYIVAHYLL 443
>gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 3', mRNA sequence
Length = 838
Score = 120 bits (257), Expect(2) = 6e-033
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / -3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 440 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 261
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 260 YWATVNEPNLFVPLGYTVGIFPPTRCA 180
Score = 40.5 bits (82), Expect(2) = 6e-033
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3 / -3
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
S EPY+ AH++L AHA V +Y + Y+ + IG+
Sbjct: 140 SSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGL 30
>gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clone RS63F06, mRNA sequence
Length = 620
Score = 122 bits (262), Expect(2) = 6e-033
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 95 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 274
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 275 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAYY 448
Score = 38.2 bits (77), Expect(2) = 6e-033
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3 / +2
Query: 198 NEPQTFSSFSYGTGIFAPGRCS 263
NEP+ ++ Y GIFAPGRCS
Sbjct: 5 NEPRVVAALGYDNGIFAPGRCS 70
>gb|DR385449.1|DR385449 RTHG1_8_F01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 5', mRNA sequence
Length = 860
Score = 66.6 bits (139), Expect(4) = 3e-032
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = +3 / +3
Query: 498 FMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
F++P+V G YP +R L+K RLP FT E ++L GS+D +G NYYT++++
Sbjct: 684 FLDPLVLGKYPDPVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYT 833
Score = 51.5 bits (106), Expect(4) = 3e-032
Identities = 23/41 (56%), Positives = 23/41 (56%)
Frame = +3 / +3
Query: 147 KVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
K F FGD VK W T N P FS Y GI APGRCS G
Sbjct: 99 KNAFEPFGDRVKYWVTVN*PLVFSLGGYDLGIHAPGRCSAG 221
Score = 44.6 bits (91), Expect(4) = 3e-032
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYR 380
GNS TEPYIV HN+L AH+ V Y Y+
Sbjct: 240 GNSATEPYIVTHNMLLAHSAVVRLYRTKYQ 329
Score = 35.0 bits (70), Expect(4) = 3e-032
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3 / +3
Query: 378 RGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSIDYNLGWF 500
+G + IGI V VP+ LD +A R+ D+ +GW+
Sbjct: 429 QGIQKGSIGIVLVVSWVVPFSKSKLDQRAARRAFDFRIGWY 551
>gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW68 3' end, mRNA sequence
Length = 801
Score = 120 bits (257), Expect(2) = 5e-032
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 412 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 591
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 592 YWATVNEPNLFVPLGYTVGIFPPTRCA 672
Score = 37.3 bits (75), Expect(2) = 5e-032
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3 / +1
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYR 380
S EPY+ AH++L AHA V +Y + Y+
Sbjct: 712 SSAEPYLAAHHVLLAHASAVEKYREKYQ 795
>gb|CO199490.1|CO199490 GEO2_1_C06.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 5', mRNA sequence
Length = 791
Score = 91.8 bits (194), Expect(2) = 5e-032
Identities = 37/83 (44%), Positives = 51/83 (61%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIV HN+L AH+ V Y Y+G + IGI + VP+ LD +A
Sbjct: 543 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 722
Query: 471 RSIDYNLGWFMEPVVRGDYPFSM 539
R+ D+ +GWF++P+V G YP S+
Sbjct: 723 RAFDFRIGWFLDPLVLGKYPDSV 791
Score = 66.1 bits (138), Expect(2) = 5e-032
Identities = 27/48 (56%), Positives = 31/48 (64%)
Frame = +3 / +3
Query: 126 KDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
+D++ FA+ CF FGD VK W T NEP FS Y GI APGRCS G
Sbjct: 381 EDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCSAG 524
>gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG541 3' end, mRNA sequence
Length = 820
Score = 120 bits (257), Expect(2) = 9e-032
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 420 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 599
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 600 YWATVNEPNLFVPLGYTVGIFPPTRCA 680
Score = 36.3 bits (73), Expect(2) = 9e-032
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 297 SLTEPYIVAHNLLRAHAETVHEYNKHYR 380
S EPY+ AH++L AHA V +Y ++ R
Sbjct: 720 SSAEPYLAAHHVLLAHASAVEKYRENIR 803
>gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 5', mRNA sequence
Length = 778
Score = 133 bits (286), Expect(2) = 1e-031
Identities = 54/89 (60%), Positives = 60/89 (67%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y IN L NGIEP+VTLFHWD PQAL D YGGF R+V+D++ FA+ CF FGD VK
Sbjct: 467 YNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVK 646
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPG 269
W T NEP FS Y GI APGRCS G
Sbjct: 647 YWVTVNEPLVFSVGGYDLGIHAPGRCSAG 733
Score = 22.6 bits (43), Expect(2) = 1e-031
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3 / +2
Query: 291 GNSLTEPYI 317
GNS TEPYI
Sbjct: 752 GNSATEPYI 778
>gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_H10_A021 5', mRNA sequence
Length = 728
Score = 113 bits (241), Expect(2) = 2e-031
Identities = 45/87 (51%), Positives = 56/87 (64%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L + G+ P VTL+HWD PQ L +S GG+L+ IV + +A+ CF FGD VK
Sbjct: 367 YNNLIDTLLQKGVRPSVTLYHWDLPQKLHESMGGWLNREIVNYFALYAETCFSAFGDRVK 546
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP + Y TGIFAPGRCS
Sbjct: 547 QWITLNEPLQTAVNGYATGIFAPGRCS 627
Score = 42.8 bits (87), Expect(2) = 2e-031
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3 / +1
Query: 282 NPTGNSLTEPYIVAHNLLRAHAETVHEY 365
+P G+S TEPY+VAHN L AHA V Y
Sbjct: 640 SPVGDSSTEPYLVAHNQLLAHAAAVDIY 723
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 122 bits (260), Expect(2) = 4e-029
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 55 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 234
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 235 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 408
Score = 26.3 bits (51), Expect(2) = 4e-029
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 237 GIFAPGRCS 263
GIFAPGRCS
Sbjct: 4 GIFAPGRCS 30
>gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 5', mRNA sequence
Length = 678
Score = 126 bits (270), Expect = 1e-028
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF FGD VK
Sbjct: 399 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVK 578
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP+ ++ Y GIFAPGRCS
Sbjct: 579 YWMTFNEPRVVAALGYDNGIFAPGRCS 659
>gb|CF390174.1|CF390174 RTDR2_12_E07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 5', mRNA
sequence
Length = 663
Score = 124 bits (265), Expect = 7e-028
Identities = 48/115 (41%), Positives = 71/115 (61%)
Frame = +3 / +2
Query: 303 TEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSID 482
+E Y VAH++L AHA V Y Y+ + IGI G PY D A +R ID
Sbjct: 17 SEIYTVAHHILLAHAAAVEAYRTKYQVEQKGSIGITLVCNGTYPYSASLDDQNAAQRVID 196
Query: 483 YNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
+ LGWFM+P+ G YP +M+ I +RLP FT+ + ++L G++D +G+NYYTS+++
Sbjct: 197 FTLGWFMDPITSGSYPTTMKERIGNRLPKFTEQQSQQLKGTFDFIGVNYYTSQYA 361
>gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO78 3' end, mRNA sequence
Length = 706
Score = 123 bits (264), Expect = 1e-027
Identities = 52/131 (39%), Positives = 76/131 (58%)
Frame = +3 / +2
Query: 252 GRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRV 431
GR + +P G+S TEPY+ AHN L AHA V Y K ++ + IGI +
Sbjct: 2 GRGRCSDRSQSPAGDSSTEPYLAAHNQLLAHAAAVDIYRKKFQDKQGGVIGITVDGEWAE 181
Query: 432 PYDNMFLDDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYD 611
P+ + D +A +R ++ GWF++P+ GDYP MR + DRLP F+ DE L GS D
Sbjct: 182 PFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQFSPDEVAVLRGSSD 361
Query: 612 IMGINYYTSRF 644
+G+N+YT+R+
Sbjct: 362 FLGLNHYTTRY 394
>gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD479 3' end, mRNA sequence
Length = 748
Score = 120 bits (257), Expect(2) = 1e-027
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +NGI+P+VTLFH+D P+AL DSYGG+L +I+ D+ +A++CF FGD VK
Sbjct: 404 YNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVK 583
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP F Y GIF P RC+
Sbjct: 584 YWATVNEPNLFVPLGYTVGIFPPTRCA 664
Score = 22.6 bits (43), Expect(2) = 1e-027
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 297 SLTEPYIVAHNLLRA 341
S EPY+ AH++L A
Sbjct: 704 SSAEPYLAAHHVLLA 748
>gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACV28 3' end, mRNA sequence
Length = 915
Score = 73.0 bits (153), Expect(3) = 1e-027
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCF 158
Y LIN L + GI PY L+H+D P+ L +YGG L+ R+V+DY FA+ CF
Sbjct: 570 YNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCF 725
Score = 46.4 bits (95), Expect(3) = 1e-027
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3 / +2
Query: 147 KVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+V +FGD TFNEP+ ++ Y GIFAPG CS
Sbjct: 713 RVLLQNFGDR*NTGMTFNEPRVVAALGYDNGIFAPGMCS 829
Score = 41.4 bits (84), Expect(3) = 1e-027
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHA 347
GNS TEPYIVAHNLL +HA
Sbjct: 854 GNSATEPYIVAHNLLLSHA 910
>gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022G02, mRNA sequence
Length = 671
Score = 122 bits (261), Expect = 3e-027
Identities = 50/87 (57%), Positives = 55/87 (63%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L ENGI+ VTLFHWD PQ L D YGGFL +V DYT +A+ CF FGD VK
Sbjct: 394 YNNLINELLENGIQVSVTLFHWDAPQCLEDEYGGFLSPCMVTDYTAYAETCFRLFGDRVK 573
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W TFNEP F Y G+ APG S
Sbjct: 574 QWITFNEPYLVCYFGYDRGLHAPGHSS 654
>gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 5', mRNA sequence
Length = 588
Score = 122 bits (260), Expect = 4e-027
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHNLL +HA V Y + Y+ + +IGI + + P N D A +
Sbjct: 23 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 202
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
RS D+++GWF+ P+ G YP SM ++ RLP FT ++ + + GS D +G+N YT+ +
Sbjct: 203 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAYY 376
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 122 bits (260), Expect = 4e-027
Identities = 50/121 (41%), Positives = 73/121 (60%)
Frame = +3 / +3
Query: 282 NPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQ 461
+P G+S TEPY+ AHN L AHA V Y K ++ + IGI + P+ + D +
Sbjct: 24 SPAGDSSTEPYLAAHNQLLAHAAAVDIYRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKE 203
Query: 462 AQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSR 641
A +R ++ GWF++P+ GDYP MR + DRLP F+ DE L GS D +G+N+YT+R
Sbjct: 204 AAQRRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTTR 383
Query: 642 F 644
+
Sbjct: 384 Y 386
>gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 5', mRNA sequence
Length = 648
Score = 120 bits (257), Expect = 9e-027
Identities = 48/114 (42%), Positives = 69/114 (60%)
Frame = +3 / +1
Query: 306 EPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSIDY 485
E Y H +L AHA V Y Y+ + IG+ PY + D A +R++D+
Sbjct: 25 EMYTAGHYMLLAHATAVEVYRSKYKVEQKGCIGLTLVCNWTYPYSSSQDDQNAAQRAVDF 204
Query: 486 NLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFS 647
LGWF++PV GDYPF+MR + DRL FT+ E E+L GS+D +G+NYYTS+++
Sbjct: 205 MLGWFIDPVTSGDYPFTMRDRLGDRLLKFTEQESEQLKGSFDFLGMNYYTSQYA 366
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 406,705,025
Number of Sequences: 355925
Number of extensions: 6304139
Number of successful extensions: 58029
Number of sequences better than 1.0e-020: 67
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9597340810
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)