TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 402 e-113
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 368 e-101
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 169 2e-093
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 336 5e-093
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 327 1e-090
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 320 1e-086
gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus mag... 308 3e-083
gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clon... 298 6e-082
gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood... 301 7e-081
gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus... 289 4e-079
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 290 1e-077
gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Plani... 279 1e-075
gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Plani... 279 1e-075
gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus p... 276 2e-075
gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clon... 279 3e-074
gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus adde... 254 1e-068
gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root w... 232 4e-062
gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus... 223 3e-059
gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus ad... 218 1e-058
gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compr... 227 1e-058
gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response R... 213 3e-056
gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control ... 204 2e-053
gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Ve... 204 3e-053
gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Ver... 204 3e-053
gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2... 200 1e-052
gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus adde... 200 2e-052
gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus ad... 182 4e-047
gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus add... 181 8e-047
gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch... 177 2e-045
gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus add... 177 2e-045
gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iro... 175 6e-045
gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control P... 175 6e-045
gb|DR088698.1|DR088698 RTAL1_3_H03.g1_A029 Roots plus added... 100 4e-042
gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciat... 156 2e-040
gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood... 165 6e-040
gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciat... 155 1e-039
gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine ro... 147 1e-036
gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus ad... 142 3e-035
gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response R... 142 3e-035
gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus p... 88 1e-034
gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus adde... 140 2e-034
gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root w... 87 7e-034
gb|BE187088.1|BE187088 NXNV_155_C08_F Nsf Xylem Normal wood... 144 8e-034
gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2... 137 1e-033
gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus... 134 9e-033
gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Plani... 134 2e-032
gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library P... 132 3e-032
gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root w... 69 4e-032
gb|DR167508.1|DR167508 RTPHOS1_19_F11.b1_A029 Roots minus p... 88 3e-031
gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response R... 128 4e-031
gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus m... 77 2e-030
gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus m... 77 2e-030
gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C fo... 77 2e-030
gb|AW984873.1|AW984873 NXNV_119_G09_F Nsf Xylem Normal wood... 127 1e-028
gb|CF667305.1|CF667305 RTCNT1_29_H05.b1_A029 Root control P... 97 2e-028
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 73 4e-028
gb|BX678371.1|BX678371 BX678371 RS Pinus pinaster cDNA clon... 81 6e-028
gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase ... 84 1e-027
gb|CF475336.1|CF475336 RTWW2_13_F07.g1_A021 Well-watered lo... 112 3e-027
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 77 7e-027
gb|BQ702675.1|BQ702675 NXSI_131_C04_F NXSI (Nsf Xylem Side ... 113 1e-026
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 78 4e-026
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 71 8e-026
gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nit... 76 2e-025
gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus pota... 76 2e-025
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 76 2e-025
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 76 2e-025
gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus pota... 76 2e-025
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 76 2e-025
gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control ... 76 2e-025
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 76 2e-025
gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch... 76 2e-025
gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch... 76 2e-025
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 76 2e-025
gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pi... 76 2e-025
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 76 2e-025
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 76 2e-025
gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch... 76 2e-025
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 76 2e-025
gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response R... 76 2e-025
gb|CO368436.1|CO368436 RTK1_40_D07.g1_A029 Roots minus pota... 62 2e-025
gb|CD022074.1|CD022074 NXPV_004_C01_F NXPV (Nsf Xylem Plani... 114 1e-024
gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropis... 72 3e-024
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 76 5e-024
gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus pota... 70 2e-023
gb|DR695212.1|DR695212 EST1085305 Normalized pine embryo li... 66 2e-023
gb|BE187293.1|BE187293 NXNV_162_B08_F Nsf Xylem Normal wood... 72 6e-023
gb|BM367436.1|BM367436 NXLV_049_B10_F NXLV (Nsf Xylem Late ... 72 1e-022
gb|DR018006.1|DR018006 STRS1_19_H08.g1_A034 Shoot tip pitch... 64 2e-022
gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus ad... 65 3e-022
gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control P... 61 1e-021
gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compr... 76 1e-021
gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo li... 62 3e-021
gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo li... 62 3e-021
gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo li... 62 3e-021
gb|CF399207.1|CF399207 RTDS3_27_E04.b1_A022 Drought-stresse... 64 5e-021
gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side ... 65 5e-021
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 402 bits (873), Expect(2) = e-113
Identities = 153/203 (75%), Positives = 182/203 (89%)
Frame = +2 / +3
Query: 11 LLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPLQY 190
LLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPLQY
Sbjct: 3 LLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQY 182
Query: 191 AVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGF 370
NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSYVVG+
Sbjct: 183 VANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVVGY 362
Query: 371 GNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRT 550
G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRT
Sbjct: 363 GSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRT 542
Query: 551 NYNYTEPTLAANAGLVAALISIS 619
NYNYTEPTLA NAGLVAAL+S+S
Sbjct: 543 NYNYTEPTLAGNAGLVAALVSLS 611
Score = 152 bits (326), Expect(2) = 1e-048
Identities = 77/136 (56%), Positives = 88/136 (64%)
Frame = -2 / -3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PTT*LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 409 GMDAPR*CTCLG*WLPYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 230
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 229 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 50
Query: 57 S*GYPGLRKSLNLLRR 10
S GYPGL+KSL+LL+R
Sbjct: 49 SYGYPGLKKSLSLLKR 2
Score = 119 bits (254), Expect = 4e-026
Identities = 64/200 (32%), Positives = 109/200 (54%)
Frame = -1 / -2
Query: 610 DQRCNQTSIRCESRLRVVVVRADIFVAITPVGASHHCSDKDVRXXXXXXXXXVTSFAPIL 431
+Q N SI C+ L ++V+ +++ IT + S+H S + +SFA +L
Sbjct: 602 NQSRN*PSIACKCWLCIIVISSNVMEHITLIRPSNHGSHNHIGIGSWTVTPLPSSFATVL 423
Query: 430 DAVVRYRRASVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEVRSAVPPR 251
V+ +VM L V+ S +HN+AHL W+ D++ L K+ + F ++ + VP R
Sbjct: 422 YLVLWDGCPTVMYMLGVMASISHNIAHLHWIFT*DIIYLSSCKVTQCFRTEKIWATVPAR 243
Query: 250 RVCSFKIVAV*RSKESCVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNIVGLVVEC 71
+CS +I+ + K+SC+ +L L PSMV+L +S +E E R++ AH+ + LVV
Sbjct: 242 NICSSQIITINCCKKSCICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHNISLVVIT 63
Query: 70 PQYFFVRVPWT*EESQPAEK 11
Q F+ + *E+ QPA++
Sbjct: 62 LQNVFIWISRA*EKPQPAQE 3
Score = 62.5 bits (130), Expect(2) = 1e-048
Identities = 33/52 (63%), Positives = 35/52 (67%)
Frame = -2 / -3
Query: 618 DIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 610 DKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 455
Score = 27.6 bits (54), Expect(2) = e-113
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAP 696
+R*E+++ C S+ VPN+P
Sbjct: 629 NR*EYNVFCSSTHVPNSP 682
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 368 bits (797), Expect = e-101
Identities = 137/186 (73%), Positives = 166/186 (89%)
Frame = +2 / +1
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPL
Sbjct: 142 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPL 321
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVV 364
QY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+V
Sbjct: 322 QYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLV 501
Query: 365 GFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDV 544
G+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DV
Sbjct: 502 GYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDV 681
Query: 545 RTNYNY 562
RTNYNY
Sbjct: 682 RTNYNY 699
Score = 151 bits (325), Expect(2) = 1e-041
Identities = 77/137 (56%), Positives = 88/137 (64%)
Frame = -2 / -3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 554 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 375
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 374 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 195
Query: 57 S*GYPGLRKSLNLLRRT 7
S GYPGL+KSL+LL+RT
Sbjct: 194 SYGYPGLKKSLSLLKRT 144
Score = 112 bits (240), Expect = 3e-024
Identities = 60/186 (32%), Positives = 102/186 (54%)
Frame = -1 / -2
Query: 562 VVVVRADIFVAITPVGASHHCSDKDVRXXXXXXXXXVTSFAPILDAVVRYRRASVMRALR 383
++V+ +++ IT + S+H S + +SFA +L V+ +VM L
Sbjct: 699 IIVISSNVMEHITLIRPSNHGSYNHIGIGSWTVTPLPSSFATVLYLVLWDGCPTVMYMLG 520
Query: 382 VLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEVRSAVPPRRVCSFKIVAV*RSKES 203
V+ S +H +AHL W+ D++ L K+ + F ++ + VP R +CS +IV + K+S
Sbjct: 519 VMASISHKIAHLHWIFT*DIIYLSSCKVTQCFRTEKIWATVPARNICSSQIVTINCCKKS 340
Query: 202 CVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNIVGLVVECPQYFFVRVPWT*EESQ 23
C+ +L L PSMV+L +S +E E R++ AH+ + LVV Q F+ + *E+ Q
Sbjct: 339 CICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHNISLVVITLQNVFIWISRA*EKPQ 160
Query: 22 PAEKNL 5
PA++NL
Sbjct: 159 PAQENL 142
Score = 39.1 bits (79), Expect(2) = 1e-041
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = -2 / -3
Query: 561 *L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 698 *L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 600
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 169 bits (363), Expect(3) = 2e-093
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +2 / +3
Query: 314 QLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 493
Q++YILGKNP+KMSYVVG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 684 QINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 863
Query: 494 VGAMVAGPDRRDGYKDVRTNYNYT 565
VGAMVAGPD+RD + DVRTNYNYT
Sbjct: 864 VGAMVAGPDKRDMFHDVRTNYNYT 935
Score = 121 bits (259), Expect(3) = 2e-093
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +2 / +3
Query: 143 GGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQL 319
GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q+
Sbjct: 387 GGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQV 563
Score = 92.3 bits (195), Expect(3) = 2e-093
Identities = 34/47 (72%), Positives = 44/47 (93%)
Frame = +2 / +2
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKG 145
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+G
Sbjct: 155 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRG 295
Score = 67.5 bits (141), Expect(4) = 1e-036
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = -2 / -1
Query: 306 ANLRRTSVV*KLGPQYHPGVSAASR*SLYREARKAALTAY*SG*GLPWLSCISPP 142
A R SV+ K GPQ+ PG+SAA +*SL ARKAA Y G GLPW S I PP
Sbjct: 550 AKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 386
Score = 64.8 bits (135), Expect(4) = 1e-036
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = -2 / -2
Query: 150 SPPLVKLNELNRGRYEHITLSVWLWNVLSISS*GYPGLRKSLNLLRRT 7
S PLV L GRYEHIT+ VWL + SS GYPGL+KSL+LL+RT
Sbjct: 300 SSPLVLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRT 157
Score = 42.8 bits (87), Expect(4) = 1e-036
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -2 / -1
Query: 567 SV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
SV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 937 SV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 833
Score = 40.9 bits (83), Expect(4) = 1e-036
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSC 313
G+DAP * G P PTT*LIF GFLPR+* C
Sbjct: 787 GMDAPR*CTCLG*WLPYPTT*LIFIGFLPRI*FIC 683
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 336 bits (727), Expect(2) = 5e-093
Identities = 128/175 (73%), Positives = 152/175 (86%)
Frame = +2 / +2
Query: 110 LPLFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTE 289
LP+F +FN T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW CGPNF++TE
Sbjct: 2 LPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTE 181
Query: 290 VLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDT 469
LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+
Sbjct: 182 TLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDS 361
Query: 470 KKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
+ NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 362 PRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 526
Score = 101 bits (216), Expect(2) = 6e-034
Identities = 55/103 (53%), Positives = 61/103 (59%)
Frame = -2 / -2
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 309 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 130
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGR 109
+*SL ARKAA Y G GLPW S I PPLV L GR
Sbjct: 129 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGR 1
Score = 63.4 bits (132), Expect(2) = 6e-034
Identities = 34/57 (59%), Positives = 37/57 (64%)
Frame = -2 / -2
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E +AAT PA A VGSV*L* VRTS SRLSGPAT+APT G +S
Sbjct: 525 PVSPPDKETNAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITFGLGLGLS 355
Score = 26.7 bits (52), Expect(2) = 5e-093
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 529 NR*EYNVFCSSTHVPNSSPTTSPLESL 609
>gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 3', mRNA sequence
Length = 779
Score = 327 bits (709), Expect(2) = 1e-090
Identities = 125/170 (73%), Positives = 148/170 (87%)
Frame = +2 / -2
Query: 125 SFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKF 304
+FN T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW CGPNF++TE LR F
Sbjct: 778 TFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDF 599
Query: 305 ARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANP 484
AR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NP
Sbjct: 598 ARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNP 419
Query: 485 NILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
N++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 418 NVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 269
Score = 99.1 bits (210), Expect(2) = 1e-033
Identities = 53/96 (55%), Positives = 59/96 (61%)
Frame = -2 / +3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 486 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 665
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKL 130
+*SL ARKAA Y G GLPW S I PPLV L
Sbjct: 666 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLL 773
Score = 64.8 bits (135), Expect(2) = 1e-033
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / +3
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 270 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 440
Score = 26.7 bits (52), Expect(2) = 1e-090
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / -1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 266 NR*EYNVFCSSTHVPNSSPTTSPLESL 186
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 320 bits (693), Expect = 1e-086
Identities = 118/163 (72%), Positives = 145/163 (88%)
Frame = +2 / +2
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPL
Sbjct: 209 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPL 388
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVV 364
QY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+V
Sbjct: 389 QYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLV 568
Query: 365 GFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 493
G+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 569 GYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 697
Score = 151 bits (325), Expect = 6e-036
Identities = 77/137 (56%), Positives = 88/137 (64%)
Frame = -2 / -1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 621 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 442
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 441 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 262
Query: 57 S*GYPGLRKSLNLLRRT 7
S GYPGL+KSL+LL+RT
Sbjct: 261 SYGYPGLKKSLSLLKRT 211
Score = 103 bits (220), Expect = 2e-021
Identities = 54/149 (36%), Positives = 87/149 (58%)
Frame = -1 / -3
Query: 451 TSFAPILDAVVRYRRASVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEV 272
+SFA +L V+ +VM L V+ S +H +AHL W+ D++ L K+ + F ++
Sbjct: 655 SSFATVLYLVLWDGCPTVMYMLGVMASISHKIAHLHWIFT*DIIYLSSCKVTQCFRTEKI 476
Query: 271 RSAVPPRRVCSFKIVAV*RSKESCVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNI 92
+ VP R +CS +IV + K+SC+ +L L PSMV+L +S +E E R++ AH+
Sbjct: 475 WATVPARNICSSQIVTINCCKKSCICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHN 296
Query: 91 VGLVVECPQYFFVRVPWT*EESQPAEKNL 5
+ LVV Q F+ + *E+ QPA++NL
Sbjct: 295 ISLVVITLQNVFIWISRA*EKPQPAQENL 209
>gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_E02_A029 5', mRNA sequence
Length = 805
Score = 308 bits (668), Expect = 3e-083
Identities = 115/154 (74%), Positives = 138/154 (89%)
Frame = +2 / +2
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPL
Sbjct: 344 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPL 523
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVV 364
QY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+V
Sbjct: 524 QYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLV 703
Query: 365 GFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRD 466
G+G+ YPK HHRGASIP N +KY CKGG+KWRD
Sbjct: 704 GYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRD 805
Score = 151 bits (325), Expect = 6e-036
Identities = 77/137 (56%), Positives = 88/137 (64%)
Frame = -2 / -2
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 756 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 577
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 576 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 397
Query: 57 S*GYPGLRKSLNLLRRT 7
S GYPGL+KSL+LL+RT
Sbjct: 396 SYGYPGLKKSLSLLKRT 346
Score = 103 bits (220), Expect = 2e-021
Identities = 54/149 (36%), Positives = 87/149 (58%)
Frame = -1 / -1
Query: 451 TSFAPILDAVVRYRRASVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEV 272
+SFA +L V+ +VM L V+ S +H +AHL W+ D++ L K+ + F ++
Sbjct: 790 SSFATVLYLVLWDGCPTVMYMLGVMASISHKIAHLHWIFT*DIIYLSSCKVTQCFRTEKI 611
Query: 271 RSAVPPRRVCSFKIVAV*RSKESCVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNI 92
+ VP R +CS +IV + K+SC+ +L L PSMV+L +S +E E R++ AH+
Sbjct: 610 WATVPARNICSSQIVTINCCKKSCICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHN 431
Query: 91 VGLVVECPQYFFVRVPWT*EESQPAEKNL 5
+ LVV Q F+ + *E+ QPA++NL
Sbjct: 430 ISLVVITLQNVFIWISRA*EKPQPAQENL 344
>gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clone RS46D05, mRNA sequence
Length = 578
Score = 298 bits (646), Expect(2) = 6e-082
Identities = 114/155 (73%), Positives = 134/155 (86%)
Frame = +2 / +3
Query: 170 RPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLK 349
RPQPLQY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+K
Sbjct: 3 RPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMK 182
Query: 350 MSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRD 529
MSYVVG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD
Sbjct: 183 MSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRD 362
Query: 530 GYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
+ DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 363 MFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 467
Score = 80.8 bits (170), Expect(2) = 4e-028
Identities = 45/83 (54%), Positives = 51/83 (61%)
Frame = -2 / -2
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PTT*LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 250 GMDAPR*CTCLG*WLPYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 71
Query: 237 SR*SLYREARKAALTAY*SG*GL 169
+*SL ARKAA Y G GL
Sbjct: 70 VK*SL*TAARKAAFATYCRGWGL 2
Score = 64.8 bits (135), Expect(2) = 4e-028
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / -2
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 466 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 296
Score = 26.7 bits (52), Expect(2) = 6e-082
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C SS VP +P +E++
Sbjct: 470 NR*EYNVFCSSSHVPKSPPNNRPLESL 550
>gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_B02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 301 bits (651), Expect = 7e-081
Identities = 114/164 (69%), Positives = 140/164 (85%)
Frame = +2 / +3
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPL
Sbjct: 63 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPL 242
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVV 364
QY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+V
Sbjct: 243 QYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLV 422
Query: 365 GFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILV 496
G+G+ YPK HHRGASIP N +KY +K RD+ NPN++V
Sbjct: 423 GYGSHYPKHVHHRGASIPKNKIKYSXXXXWKXRDSXXXNPNVIV 554
Score = 151 bits (325), Expect = 6e-036
Identities = 77/137 (56%), Positives = 88/137 (64%)
Frame = -2 / -2
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 475 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 296
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 295 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 116
Query: 57 S*GYPGLRKSLNLLRRT 7
S GYPGL+KSL+LL+RT
Sbjct: 115 SYGYPGLKKSLSLLKRT 65
>gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_E09_A029 3', mRNA sequence
Length = 717
Score = 289 bits (626), Expect(2) = 4e-079
Identities = 110/152 (72%), Positives = 131/152 (86%)
Frame = +2 / -2
Query: 179 PLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSY 358
PLQY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY
Sbjct: 686 PLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSY 507
Query: 359 VVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYK 538
+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD +
Sbjct: 506 LVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFH 327
Query: 539 DVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 326 DVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 231
Score = 75.3 bits (158), Expect(2) = 2e-026
Identities = 42/80 (52%), Positives = 48/80 (60%)
Frame = -2 / +1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 448 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 627
Query: 237 SR*SLYREARKAALTAY*SG 178
+*SL ARKAA Y G
Sbjct: 628 VK*SL*TAARKAAFATYCRG 687
Score = 64.8 bits (135), Expect(2) = 2e-026
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / +1
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 232 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 402
Score = 26.7 bits (52), Expect(2) = 4e-079
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / -1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 228 NR*EYNVFCSSTHVPNSSPTTSPLESL 148
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 290 bits (627), Expect = 1e-077
Identities = 109/154 (70%), Positives = 130/154 (84%)
Frame = +2 / +2
Query: 104 SYLPLFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYT 283
SYLP+F +FN T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW CGPNF++
Sbjct: 2 SYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFS 181
Query: 284 TEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWR 463
TE LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWR
Sbjct: 182 TETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWR 361
Query: 464 DTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYT 565
D+ + NPN +VGA VAGPD+RD + DV TNY T
Sbjct: 362 DSPRPNPNXIVGAXVAGPDKRDMFHDVPTNYXXT 463
Score = 107 bits (228), Expect(2) = 2e-026
Identities = 57/105 (54%), Positives = 63/105 (60%)
Frame = -2 / -3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 315 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 136
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYE 103
+*SL ARKAA Y G GLPW S I PPLV L GRYE
Sbjct: 135 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYE 1
Score = 32.7 bits (65), Expect(2) = 2e-026
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = -2 / -3
Query: 555 *FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
* V TS SRLSGPAT APT LG +S
Sbjct: 453 *LVGTSWNISRLSGPATXAPTIXLGLGLGLS 361
>gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C10 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 279 bits (603), Expect(2) = 1e-075
Identities = 106/146 (72%), Positives = 127/146 (86%)
Frame = +2 / +2
Query: 197 NAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGN 376
NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+
Sbjct: 5 NAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGS 184
Query: 377 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 556
YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNY
Sbjct: 185 HYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNY 364
Query: 557 NYTEPTLAANAGLVAALISISDIKTG 634
NYTEPTLA NAGLVAAL+S+S TG
Sbjct: 365 NYTEPTLAGNAGLVAALVSLSGGDTG 442
Score = 71.6 bits (150), Expect(2) = 2e-025
Identities = 40/73 (54%), Positives = 46/73 (63%)
Frame = -2 / -2
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 225 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 46
Query: 237 SR*SLYREARKAA 199
+*SL ARKAA
Sbjct: 45 VK*SL*TAARKAA 7
Score = 64.8 bits (135), Expect(2) = 2e-025
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / -2
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 441 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 271
Score = 25.8 bits (50), Expect(2) = 1e-075
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +2
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 443 GIDKNTMFSAV 475
>gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_A11 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 279 bits (603), Expect(2) = 1e-075
Identities = 106/146 (72%), Positives = 127/146 (86%)
Frame = +2 / +2
Query: 197 NAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGN 376
NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+
Sbjct: 5 NAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGS 184
Query: 377 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 556
YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNY
Sbjct: 185 HYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNY 364
Query: 557 NYTEPTLAANAGLVAALISISDIKTG 634
NYTEPTLA NAGLVAAL+S+S TG
Sbjct: 365 NYTEPTLAGNAGLVAALVSLSGGDTG 442
Score = 71.6 bits (150), Expect(2) = 2e-025
Identities = 40/73 (54%), Positives = 46/73 (63%)
Frame = -2 / -3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 225 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 46
Query: 237 SR*SLYREARKAA 199
+*SL ARKAA
Sbjct: 45 VK*SL*TAARKAA 7
Score = 64.8 bits (135), Expect(2) = 2e-025
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / -3
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 441 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 271
Score = 25.8 bits (50), Expect(2) = 1e-075
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +2
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 443 GIDKNTMFSAV 475
>gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_F09_A029 3', mRNA sequence
Length = 765
Score = 276 bits (598), Expect(2) = 2e-075
Identities = 105/146 (71%), Positives = 127/146 (86%)
Frame = +2 / -2
Query: 197 NAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGN 376
+AAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+
Sbjct: 764 SAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGS 585
Query: 377 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 556
YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNY
Sbjct: 584 HYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNY 405
Query: 557 NYTEPTLAANAGLVAALISISDIKTG 634
NYTEPTLA NAGLVAAL+S+S TG
Sbjct: 404 NYTEPTLAGNAGLVAALVSLSGGDTG 327
Score = 71.6 bits (150), Expect(2) = 2e-025
Identities = 40/73 (54%), Positives = 46/73 (63%)
Frame = -2 / +1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 544 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 723
Query: 237 SR*SLYREARKAA 199
+*SL ARKAA
Sbjct: 724 VK*SL*TAARKAA 762
Score = 64.8 bits (135), Expect(2) = 2e-025
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / +1
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 328 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 498
Score = 26.7 bits (52), Expect(2) = 2e-075
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / -1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 324 NR*EYNVFCSSTHVPNSSPTTSPLESL 244
>gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clone RS36F1, mRNA sequence
Length = 620
Score = 279 bits (603), Expect = 3e-074
Identities = 106/140 (75%), Positives = 126/140 (90%)
Frame = +2 / +1
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQLNHGRPQPL
Sbjct: 196 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPL 375
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVV 364
QY NAAFLA++YSDYL AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSYVV
Sbjct: 376 QYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVV 555
Query: 365 GFGNKYPKRPHHRGASIPHN 424
G+G+ YPK HHRGASIP N
Sbjct: 556 GYGSHYPKHVHHRGASIPKN 615
Score = 154 bits (331), Expect = 1e-036
Identities = 78/137 (56%), Positives = 89/137 (64%)
Frame = -2 / -1
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PTT*LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 608 GMDAPR*CTCLG*WLPYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 429
Query: 237 SR*SLYREARKAALTAY*SG*GLPWLSCISPPLVKLNELNRGRYEHITLSVWLWNVLSIS 58
+*SL ARKAA Y G GLPW S I PPLV L GRYEHIT+ VWL + S
Sbjct: 428 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL**LCKTS 249
Query: 57 S*GYPGLRKSLNLLRRT 7
S GYPGL+KSL+LL+RT
Sbjct: 248 SYGYPGLKKSLSLLKRT 198
Score = 101 bits (215), Expect = 1e-020
Identities = 49/133 (36%), Positives = 80/133 (60%)
Frame = -1 / -3
Query: 403 SVMRALRVLVSETHNVAHLQWVLAKDVVEL*PGKLAEDFCGVEVRSAVPPRRVCSFKIVA 224
+VM L V+ S +HN+AHL W+ D++ L K+ + F ++ + VP R +CS +I+
Sbjct: 594 TVMYMLGVMASISHNIAHLHWIFT*DIIYLSSCKVTQCFRTEKIWATVPARNICSSQIIT 415
Query: 223 V*RSKESCVDSVLKWLRPSMVELY*SSFSEVE*IE*RQI*AHNIVGLVVECPQYFFVRVP 44
+ K+SC+ +L L PSMV+L +S +E E R++ AH+ + LVV Q F+ +
Sbjct: 414 INCCKKSCICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHNISLVVITLQNVFIWIS 235
Query: 43 WT*EESQPAEKNL 5
*E+ QPA++NL
Sbjct: 234 RA*EKPQPAQENL 196
>gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 5', mRNA sequence
Length = 871
Score = 254 bits (549), Expect(2) = 1e-068
Identities = 96/134 (71%), Positives = 115/134 (85%)
Frame = +2 / +1
Query: 233 LEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGAS 412
L AAD PGW CGPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGAS
Sbjct: 1 LTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGAS 180
Query: 413 IPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAG 592
IP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAG
Sbjct: 181 IPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 360
Query: 593 LVAALISISDIKTG 634
LVAAL+S+S TG
Sbjct: 361 LVAALVSLSGGDTG 402
Score = 64.8 bits (135), Expect(2) = 5e-022
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = -2 / -3
Query: 633 PVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 463
PV D E AAT PA A VGSV*L* VRTS SRLSGPAT+APT LG +S
Sbjct: 401 PVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGLGLS 231
Score = 60.2 bits (125), Expect(2) = 5e-022
Identities = 32/60 (53%), Positives = 37/60 (61%)
Frame = -2 / -3
Query: 417 GIDAPL**GRFGYLFPKPTT*LIFNGFLPRM*SSCDLANLRRTSVV*KLGPQYHPGVSAA 238
G+DAP * G P PT *LIF GFLPR+* A R SV+ K GPQ+ PG+SAA
Sbjct: 185 GMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 6
Score = 26.7 bits (52), Expect(2) = 1e-068
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 405 NR*EYNVFCSSTHVPNSSPTTSPLESL 485
>gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV080_B12 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 232 bits (502), Expect(2) = 4e-062
Identities = 88/123 (71%), Positives = 107/123 (86%)
Frame = +2 / +3
Query: 266 GPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCK 445
GPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CK
Sbjct: 3 GPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCK 182
Query: 446 GGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDI 625
GG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 183 GGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGG 362
Query: 626 KTG 634
TG
Sbjct: 363 DTG 371
Score = 26.7 bits (52), Expect(2) = 4e-062
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 374 NR*EYNVFCSSTHVPNSSPTTSPLESL 454
>gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 5', mRNA sequence
Length = 830
Score = 223 bits (481), Expect(2) = 3e-059
Identities = 85/120 (70%), Positives = 103/120 (85%)
Frame = +2 / +2
Query: 275 FYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGY 454
F+ TE LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+
Sbjct: 2 FFRTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGW 181
Query: 455 KWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 182 KWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 361
Score = 26.7 bits (52), Expect(2) = 3e-059
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 364 NR*EYNVFCSSTHVPNSSPTTSPLESL 444
>gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 3', mRNA sequence
Length = 764
Score = 218 bits (470), Expect(2) = 1e-058
Identities = 81/128 (63%), Positives = 99/128 (77%)
Frame = +2 / +3
Query: 251 PGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGV 430
PGWYCGP ++ + LR FA +Q++YILGKNPL MSYVVG+GN+YPK HHR ASIP NGV
Sbjct: 9 PGWYCGPTYFDRQTLRDFATTQINYILGKNPLGMSYVVGYGNRYPKHVHHRAASIPQNGV 188
Query: 431 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 610
KY C G+KWRD+ NP++L GAMV GPD+ D + D R NYN TEPT+A NAGLVAALI
Sbjct: 189 KYTCTSGFKWRDSPNPNPHVLTGAMVGGPDKFDRFNDARNNYNQTEPTIAGNAGLVAALI 368
Query: 611 SISDIKTG 634
++S+ G
Sbjct: 369 ALSNGDNG 392
Score = 29.9 bits (59), Expect(2) = 1e-058
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 649 *EHHLLCDSSDVPNAPAAAISMETI 723
*E+HLL S++VP+ A+ SME+I
Sbjct: 410 *EYHLLFSSTNVPHDAASPCSMESI 484
>gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_A08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 227 bits (490), Expect = 1e-058
Identities = 85/124 (68%), Positives = 104/124 (83%)
Frame = +2 / +2
Query: 263 CGPNFYTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGC 442
CGPNF++TE LR FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY C
Sbjct: 2 CGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSC 181
Query: 443 KGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISD 622
KGG+KWRD+ + NPN++V MVAGPD+RD + DVRTNYNYTEPTLA NAG AAL+S+S
Sbjct: 182 KGGWKWRDSPRPNPNVIVXXMVAGPDKRDMFHDVRTNYNYTEPTLAXNAGXXAALVSLSG 361
Query: 623 IKTG 634
TG
Sbjct: 362 GDTG 373
>gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 5', mRNA sequence
Length = 747
Score = 213 bits (459), Expect(2) = 3e-056
Identities = 81/113 (71%), Positives = 98/113 (86%)
Frame = +2 / +3
Query: 296 RKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKK 475
R FAR+Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ +
Sbjct: 3 RDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPR 182
Query: 476 ANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 PNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 341
Score = 26.7 bits (52), Expect(2) = 3e-056
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 344 NR*EYNVFCSSTHVPNSSPTTSPLESL 424
>gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_C08_A029 5', mRNA sequence
Length = 816
Score = 204 bits (439), Expect(2) = 2e-053
Identities = 77/107 (71%), Positives = 93/107 (86%)
Frame = +2 / +3
Query: 314 QLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 493
Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 494 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 26.7 bits (52), Expect(2) = 2e-053
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 326 NR*EYNVFCSSTHVPNSSPTTSPLESL 406
>gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5', mRNA sequence
Length = 450
Score = 204 bits (439), Expect(2) = 3e-053
Identities = 77/107 (71%), Positives = 93/107 (86%)
Frame = +2 / +3
Query: 314 QLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 493
Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 494 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 25.8 bits (50), Expect(2) = 3e-053
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 324 GIDKNTMFSAV 356
>gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5' similar to Arabidopsis thaliana sequence
At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 204 bits (439), Expect(2) = 3e-053
Identities = 77/107 (71%), Positives = 93/107 (86%)
Frame = +2 / +3
Query: 314 QLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 493
Q++YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 494 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 25.8 bits (50), Expect(2) = 3e-053
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 324 GIDKNTMFSAV 356
>gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 5', mRNA sequence
Length = 818
Score = 200 bits (432), Expect(2) = 1e-052
Identities = 76/105 (72%), Positives = 91/105 (86%)
Frame = +2 / +1
Query: 320 DYILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVG 499
+YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VG
Sbjct: 10 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 189
Query: 500 AMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
AMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 190 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 324
Score = 26.7 bits (52), Expect(2) = 1e-052
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 327 NR*EYNVFCSSTHVPNSSPTTSPLESL 407
>gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_C03_A029 3', mRNA sequence
Length = 754
Score = 200 bits (431), Expect(2) = 2e-052
Identities = 76/104 (73%), Positives = 90/104 (86%)
Frame = +2 / -3
Query: 323 YILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGA 502
YILGKNP+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGA
Sbjct: 752 YILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGA 573
Query: 503 MVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
MVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 572 MVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 441
Score = 26.7 bits (52), Expect(2) = 2e-052
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / -2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 438 NR*EYNVFCSSTHVPNSSPTTSPLESL 358
>gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 5', mRNA sequence
Length = 711
Score = 182 bits (392), Expect(2) = 4e-047
Identities = 69/97 (71%), Positives = 83/97 (85%)
Frame = +2 / +3
Query: 344 LKMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDR 523
+KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+
Sbjct: 6 MKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDK 185
Query: 524 RDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 186 RDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 296
Score = 26.7 bits (52), Expect(2) = 4e-047
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 299 NR*EYNVFCSSTHVPNSSPTTSPLESL 379
>gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 5', mRNA sequence
Length = 837
Score = 181 bits (390), Expect(2) = 8e-047
Identities = 69/96 (71%), Positives = 82/96 (85%)
Frame = +2 / -3
Query: 347 KMSYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRR 526
KMSY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+R
Sbjct: 835 KMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKR 656
Query: 527 DGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
D + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 655 DMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 548
Score = 26.7 bits (52), Expect(2) = 8e-047
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / -2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 545 NR*EYNVFCSSTHVPNSSPTTSPLESL 465
>gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G05_A034 5', mRNA sequence
Length = 735
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 67/94 (71%), Positives = 80/94 (85%)
Frame = +2 / +3
Query: 353 SYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDG 532
SY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD
Sbjct: 3 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 182
Query: 533 YKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
+ DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 FHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 284
Score = 26.7 bits (52), Expect(2) = 2e-045
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 287 NR*EYNVFCSSTHVPNSSPTTSPLESL 367
>gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_H04_A029 5', mRNA sequence
Length = 591
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 67/94 (71%), Positives = 80/94 (85%)
Frame = +2 / +2
Query: 353 SYVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDG 532
SY+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD
Sbjct: 2 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 181
Query: 533 YKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
+ DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 182 FHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 283
Score = 26.7 bits (52), Expect(2) = 2e-045
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 286 NR*EYNVFCSSTHVPNSSPTTSPLESL 366
>gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_E03_A029 3', mRNA sequence
Length = 839
Score = 175 bits (376), Expect(2) = 6e-045
Identities = 66/93 (70%), Positives = 79/93 (84%)
Frame = +2 / +2
Query: 356 YVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGY 535
Y+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD +
Sbjct: 2 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 181
Query: 536 KDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 182 HDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 280
Score = 26.7 bits (52), Expect(2) = 6e-045
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 283 NR*EYNVFCSSTHVPNSSPTTSPLESL 363
>gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_H05_A029 5', mRNA sequence
Length = 772
Score = 175 bits (376), Expect(2) = 6e-045
Identities = 66/93 (70%), Positives = 79/93 (84%)
Frame = +2 / +1
Query: 356 YVVGFGNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGY 535
Y+VG+G+ YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD +
Sbjct: 1 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 180
Query: 536 KDVRTNYNYTEPTLAANAGLVAALISISDIKTG 634
DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 181 HDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 279
Score = 26.7 bits (52), Expect(2) = 6e-045
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 282 NR*EYNVFCSSTHVPNSSPTTSPLESL 362
>gb|DR088698.1|DR088698 RTAL1_3_H03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_H03_A029 5', mRNA sequence
Length = 509
Score = 100 bits (214), Expect(2) = 4e-042
Identities = 38/51 (74%), Positives = 48/51 (94%)
Frame = +2 / +2
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQ 157
+VLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLP+F +FN T+GGLIQ
Sbjct: 233 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQ 385
Score = 91.8 bits (194), Expect(2) = 4e-042
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = +2 / +3
Query: 155 QLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFY 280
+LNHGRPQPLQY NAAFLA++YSDYL AAD PGW CGPNF+
Sbjct: 384 RLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFF 509
Score = 68.4 bits (143), Expect(2) = 1e-021
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = -2 / -3
Query: 153 ISPPLVKLNELNRGRYEHITLSVWLWNVLSISS*GYPGLRKSLNLLRRT 7
I PPLV L GRYEHIT+ VWL + SS GYPGL+KSL+LL+RT
Sbjct: 381 IKPPLVLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRT 235
Score = 55.6 bits (115), Expect(2) = 1e-021
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -2 / -2
Query: 276 KLGPQYHPGVSAASR*SLYREARKAALTAY*SG*GLPWLS 157
K GPQ+ PG+SAA +*SL ARKAA Y G GLPW S
Sbjct: 505 KFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGLPWFS 386
>gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP109B04 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 510
Score = 156 bits (335), Expect(2) = 2e-040
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +2 / +2
Query: 386 KRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYT 565
K HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYT
Sbjct: 2 KHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYT 181
Query: 566 EPTLAANAGLVAALISISDIKTG 634
EPTLA NAGLVAAL+S+S TG
Sbjct: 182 EPTLAGNAGLVAALVSLSGGDTG 250
Score = 30.4 bits (60), Expect(2) = 2e-040
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+P +E++
Sbjct: 253 NR*EYNVFCSSTHVPNSPPTTSPLESL 333
>gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_133_G09 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 165 bits (354), Expect = 6e-040
Identities = 61/92 (66%), Positives = 75/92 (81%)
Frame = +2 / +1
Query: 5 EVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPL 184
++LL+RLR+FL PGYPYE +L ++HNQT ++CSYLP + SFN T GLIQLNHG P PL
Sbjct: 145 QILLTRLRMFLDPGYPYENLLDSYHNQTTILLCSYLPNYKSFNRTXXGLIQLNHGNPXPL 324
Query: 185 QYAVNAAFLASLYSDYLEAADTPGWYCGPNFY 280
Y VNAAFLA+LYSDYL AA+ PGWYCGP ++
Sbjct: 325 XYVVNAAFLAALYSDYLAAANIPGWYCGPTYF 420
>gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114A07 similar to Endoglucanase, mRNA
sequence
Length = 370
Score = 155 bits (332), Expect(2) = 1e-039
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +2 / +1
Query: 395 HHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPT 574
HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPT
Sbjct: 1 HHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPT 180
Query: 575 LAANAGLVAALISISDIKTG 634
LA NAGLVAAL+S+S TG
Sbjct: 181 LAGNAGLVAALVSLSGGDTG 240
Score = 29.5 bits (58), Expect(2) = 1e-039
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+P +E++
Sbjct: 243 NR*EYNVFCSSTHVPNSPPNTSPLESL 323
>gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_B11_A021 5', mRNA
sequence
Length = 722
Score = 147 bits (316), Expect(2) = 1e-036
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = +2 / +1
Query: 401 RGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLA 580
RGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA
Sbjct: 1 RGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLA 180
Query: 581 ANAGLVAALISISDIKTG 634
NAGLVAAL+S+S TG
Sbjct: 181 GNAGLVAALVSLSGGDTG 234
Score = 26.7 bits (52), Expect(2) = 1e-036
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 237 NR*EYNVFCSSTHVPNSSPTTSPLESL 317
>gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 3', mRNA sequence
Length = 822
Score = 142 bits (305), Expect(2) = 3e-035
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = +2 / +3
Query: 407 ASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAAN 586
ASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA N
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGN 182
Query: 587 AGLVAALISISDIKTG 634
AGLVAAL+S+S TG
Sbjct: 183 AGLVAALVSLSGGDTG 230
Score = 26.7 bits (52), Expect(2) = 3e-035
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 233 NR*EYNVFCSSTHVPNSSPTTSPLESL 313
>gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 3', mRNA sequence
Length = 803
Score = 142 bits (305), Expect(2) = 3e-035
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = +2 / +3
Query: 407 ASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAAN 586
ASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA N
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGN 182
Query: 587 AGLVAALISISDIKTG 634
AGLVAAL+S+S TG
Sbjct: 183 AGLVAALVSLSGGDTG 230
Score = 26.7 bits (52), Expect(2) = 3e-035
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 233 NR*EYNVFCSSTHVPNSSPTTSPLESL 313
>gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 5', mRNA sequence
Length = 829
Score = 87.7 bits (185), Expect(3) = 1e-034
Identities = 33/47 (70%), Positives = 41/47 (87%)
Frame = +2 / -3
Query: 278 YTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIP 418
+T + LRKFA SQ+DYILG+NP++MSY+VGFG+ YPK HHRGASIP
Sbjct: 599 FTPQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 459
Score = 63.8 bits (133), Expect(3) = 1e-034
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +2 / -3
Query: 434 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAAL 607
Y C GY W ++K NPN+ GA+V GP + D + D+R+N EP+ +A LV L
Sbjct: 440 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLL 267
Score = 34.1 bits (68), Expect(3) = 1e-034
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2 / -3
Query: 182 LQYAVNAAFLASLYSDYLEAADTPGWYCG 268
+Q++VN+A LA +YSDYL + CG
Sbjct: 698 IQHSVNSALLALIYSDYLLTSRVENMKCG 612
>gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 3', mRNA sequence
Length = 830
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = +2 / +1
Query: 410 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 589
SIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NA
Sbjct: 1 SIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNA 180
Query: 590 GLVAALISISDIKTG 634
GLVAAL+S+S TG
Sbjct: 181 GLVAALVSLSGGDTG 225
Score = 25.8 bits (50), Expect(2) = 2e-034
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +1
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 226 GIDKNTMFSAV 258
>gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_H08 5' similar to Arabidopsis thaliana
sequence At1g19940 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 548
Score = 87.2 bits (184), Expect(3) = 7e-034
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +2 / +2
Query: 278 YTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIP 418
+T + LRKFA SQ+DYILG+NP++MSY+VGFGN YPK HH GASIP
Sbjct: 185 FTPQDLRKFAFSQVDYILGENPMRMSYLVGFGNNYPKHVHHXGASIP 325
Score = 64.8 bits (135), Expect(3) = 7e-034
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +2 / +2
Query: 434 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALIS 613
Y C GY W ++K NPN+ GA+V GP + D + D+R+N EP+ +A LV L
Sbjct: 344 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLLSG 523
Query: 614 I 616
I
Sbjct: 524 I 526
Score = 30.9 bits (61), Expect(3) = 7e-034
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 182 LQYAVNAAFLASLYSDYL 235
+Q++VN+A LA +YSDYL
Sbjct: 87 IQHSVNSALLALIYSDYL 140
>gb|BE187088.1|BE187088 NXNV_155_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_155_C08 5' similar to Arabidopsis thaliana
sequence At4g24260 endo-1,4-beta-glucanase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 144 bits (310), Expect = 8e-034
Identities = 54/77 (70%), Positives = 65/77 (84%)
Frame = +2 / +3
Query: 179 PLQYAVNAAFLASLYSDYLEAADTPGWYCGPNFYTTEVLRKFARSQLDYILGKNPLKMSY 358
PLQY NAAFLA++YSDYL AA PGW CGPNF++TE LR FAR+Q++YIL KNP+KMSY
Sbjct: 3 PLQYVANAAFLAAVYSDYLTAAXIPGWNCGPNFFSTETLRDFARTQINYILXKNPMKMSY 182
Query: 359 VVGFGNKYPKRPHHRGA 409
+VG+G+ YPK HHRGA
Sbjct: 183 LVGYGSHYPKXVHHRGA 233
>gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 3', mRNA sequence
Length = 831
Score = 137 bits (293), Expect(2) = 1e-033
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = +2 / +2
Query: 416 PHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGL 595
P N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGL
Sbjct: 2 PKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGL 181
Query: 596 VAALISISDIKTG 634
VAAL+S+S TG
Sbjct: 182 VAALVSLSGGDTG 220
Score = 26.7 bits (52), Expect(2) = 1e-033
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 223 NR*EYNVFCSSTHVPNSSPTTSPLESL 303
>gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 3', mRNA sequence
Length = 786
Score = 134 bits (287), Expect(2) = 9e-033
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = +2 / +1
Query: 422 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 601
N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVA
Sbjct: 1 NKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVA 180
Query: 602 ALISISDIKTG 634
AL+S+S TG
Sbjct: 181 ALVSLSGGDTG 213
Score = 26.7 bits (52), Expect(2) = 9e-033
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 216 NR*EYNVFCSSTHVPNSSPTTSPLESL 296
>gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_B08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 320
Score = 134 bits (287), Expect(2) = 2e-032
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = +2 / +2
Query: 422 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 601
N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVA
Sbjct: 5 NKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVA 184
Query: 602 ALISISDIKTG 634
AL+S+S TG
Sbjct: 185 ALVSLSGGDTG 217
Score = 25.8 bits (50), Expect(2) = 2e-032
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +2
Query: 641 GIDKNTIFSAI 673
GIDKNT+FSA+
Sbjct: 218 GIDKNTMFSAV 250
>gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 479
Score = 132 bits (283), Expect(2) = 3e-032
Identities = 50/69 (72%), Positives = 60/69 (86%)
Frame = +2 / +2
Query: 428 VKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAAL 607
+KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL
Sbjct: 2 IKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAAL 181
Query: 608 ISISDIKTG 634
+S+S TG
Sbjct: 182 VSLSGGDTG 208
Score = 26.7 bits (52), Expect(2) = 3e-032
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 211 NR*EYNVFCSSTHVPNSSPTTSPLESL 291
>gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_D08 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 352
Score = 68.9 bits (144), Expect(3) = 4e-032
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +2 / +2
Query: 494 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTGR 637
V AMVAGPD+RD D RT NYTE TLA+NAGL+AAL+S+S +GR
Sbjct: 176 VRAMVAGPDKRDMNHDFRTXXNYTEXTLASNAGLLAALLSLSGGDSGR 319
Score = 65.2 bits (136), Expect(3) = 4e-032
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +3
Query: 323 YILGKNPLKMSYVVGFGNKYPKRPHHRGASIPHNGVK 433
YIL KNP+ MSY+ G+G+ YPK HHRGASIP N +K
Sbjct: 3 YILCKNPMNMSYLEGYGSHYPKHVHHRGASIPKNKIK 113
Score = 42.8 bits (87), Expect(3) = 4e-032
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2 / +1
Query: 431 KYGCKGGYKWRDTKKANPNIL 493
KY CKGG+KWRD+ NPN++
Sbjct: 112 KYSCKGGWKWRDSPIPNPNVI 174
>gb|DR167508.1|DR167508 RTPHOS1_19_F11.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 3', mRNA sequence
Length = 802
Score = 87.7 bits (185), Expect(3) = 3e-031
Identities = 33/47 (70%), Positives = 41/47 (87%)
Frame = +2 / -3
Query: 278 YTTEVLRKFARSQLDYILGKNPLKMSYVVGFGNKYPKRPHHRGASIP 418
+T + LRKFA SQ+DYILG+NP++MSY+VGFG+ YPK HHRGASIP
Sbjct: 275 FTPQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 135
Score = 52.4 bits (108), Expect(3) = 3e-031
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2 / -3
Query: 434 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVR 547
Y C GY W ++K NPN+ GA+V GP + D + D+R
Sbjct: 116 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIR 3
Score = 34.1 bits (68), Expect(3) = 3e-031
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2 / -3
Query: 182 LQYAVNAAFLASLYSDYLEAADTPGWYCG 268
+Q++VN+A LA +YSDYL + CG
Sbjct: 374 IQHSVNSALLALIYSDYLLTSRVENMKCG 288
>gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 3', mRNA sequence
Length = 810
Score = 128 bits (275), Expect(2) = 4e-031
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = +2 / +2
Query: 434 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALIS 613
Y CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S
Sbjct: 2 YSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVS 181
Query: 614 ISDIKTG 634
+S TG
Sbjct: 182 LSGGDTG 202
Score = 26.7 bits (52), Expect(2) = 4e-031
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 643 HR*EHHLLCDSSDVPNAPAAAISMETI 723
+R*E+++ C S+ VPN+ +E++
Sbjct: 205 NR*EYNVFCSSTHVPNSSPTTSPLESL 285
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 566,118,842
Number of Sequences: 355925
Number of extensions: 8129944
Number of successful extensions: 45920
Number of sequences better than 1.0e-020: 121
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16336324600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)