TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX681492.1|BX681492 BX681492 RS Pinus pinaster cDNA clon... 77 2e-022
gb|CO367543.1|CO367543 RTK1_35_A06.b1_A029 Roots minus pota... 77 3e-022
gb|DR020495.1|DR020495 STRS1_37_H07.b1_A034 Shoot tip pitch... 77 3e-022
gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinu... 77 3e-022
gb|DT638133.1|DT638133 EST1153064 Normalized pine embryo li... 77 3e-022
gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magn... 77 3e-022
gb|DR019318.1|DR019318 STRS1_29_E03.b1_A034 Shoot tip pitch... 77 3e-022
gb|DR069340.1|DR069340 RTDK1_6_D02.g1_A029 Roots, dark Pinu... 77 3e-022
gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus p... 77 3e-022
gb|CO364769.1|CO364769 RTK1_21_E05.g1_A029 Roots minus pota... 77 3e-022
gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pin... 77 3e-022
gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch... 77 3e-022
gb|CX649932.1|CX649932 COLD1_42_A05.g1_A029 Root cold Pinus... 77 3e-022
gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added... 77 3e-022
gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus pota... 77 3e-022
gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potas... 77 3e-022
gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus add... 77 3e-022
gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control P... 77 3e-022
gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus... 77 3e-022
gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control P... 77 3e-022
gb|CX649863.1|CX649863 COLD1_42_A05.b1_A029 Root cold Pinus... 77 3e-022
gb|DR693161.1|DR693161 EST1083249 Normalized pine embryo li... 77 3e-022
gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered lo... 77 3e-022
gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus mag... 77 3e-022
gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control P... 77 3e-022
gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch... 77 3e-022
gb|CV034499.1|CV034499 RTNACL1_9_A04.g1_A029 Roots plus add... 77 3e-022
gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control P... 77 3e-022
gb|CX647213.1|CX647213 COLD1_14_H08.b1_A029 Root cold Pinus... 77 3e-022
gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciat... 77 3e-022
gb|DR060364.1|DR060364 RTNIT1_27_H05.b1_A029 Roots minus ni... 77 3e-022
gb|CF664799.1|CF664799 RTCNT1_12_B07.b1_A029 Root control P... 77 3e-022
gb|DR072291.1|DR072291 RTDK1_25_G03.b1_A029 Roots, dark Pin... 77 3e-022
gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered lo... 77 3e-022
gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus mag... 77 3e-022
gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfu... 77 3e-022
gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stresse... 77 3e-022
gb|BX679950.1|BX679950 BX679950 RS Pinus pinaster cDNA clon... 77 3e-022
gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch... 77 3e-022
gb|BX678800.1|BX678800 BX678800 RS Pinus pinaster cDNA clon... 77 3e-022
gb|BM133515.1|BM133515 NXLV_008_B01_F NXLV (Nsf Xylem Late ... 77 4e-022
gb|DR694175.1|DR694175 EST1084265 Normalized pine embryo li... 75 1e-021
gb|DT638620.1|DT638620 EST1153551 Normalized pine embryo li... 75 1e-021
gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciat... 75 1e-021
gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine ro... 73 3e-021
gb|BX678836.1|BX678836 BX678836 RS Pinus pinaster cDNA clon... 74 9e-021
>gb|BX681492.1|BX681492 BX681492 RS Pinus pinaster cDNA clone RS60C09, mRNA sequence
Length = 519
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 366 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 470
Score = 47.3 bits (97), Expect(2) = 2e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 291 SRVSALFSGTQDKCVACGKTVYPIEKV 371
>gb|CO367543.1|CO367543 RTK1_35_A06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_A06_A029 3', mRNA sequence
Length = 897
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 179 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 283
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 104 SRVSALFSGTQDKCVACGKTVYPIEKV 184
>gb|DR020495.1|DR020495 STRS1_37_H07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_H07_A034 3', mRNA sequence
Length = 895
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 174 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 278
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 99 SRVSALFSGTQDKCVACGKTVYPIEKV 179
>gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D02_A029 3', mRNA sequence
Length = 894
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 381 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 277
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 456 SRVSALFSGTQDKCVACGKTVYPIEKV 376
>gb|DT638133.1|DT638133 EST1153064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHB50 3' end, mRNA sequence
Length = 887
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 502 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 606
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 427 SRVSALFSGTQDKCVACGKTVYPIEKV 507
>gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_1_F07_A029 5', mRNA sequence
Length = 869
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 423 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 527
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 348 SRVSALFSGTQDKCVACGKTVYPIEKV 428
>gb|DR019318.1|DR019318 STRS1_29_E03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_E03_A034 3', mRNA sequence
Length = 867
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 266 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 370
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 191 SRVSALFSGTQDKCVACGKTVYPIEKV 271
>gb|DR069340.1|DR069340 RTDK1_6_D02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D02_A029 5', mRNA sequence
Length = 850
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 579 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 475
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 654 SRVSALFSGTQDKCVACGKTVYPIEKV 574
>gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_A09_A029 5', mRNA sequence
Length = 847
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 462 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 566
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 387 SRVSALFSGTQDKCVACGKTVYPIEKV 467
>gb|CO364769.1|CO364769 RTK1_21_E05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_E05_A029 5', mRNA sequence
Length = 841
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 220 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 324
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 145 SRVSALFSGTQDKCVACGKTVYPIEKV 225
>gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_E10_A029 5', mRNA sequence
Length = 834
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 388 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 492
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 313 SRVSALFSGTQDKCVACGKTVYPIEKV 393
>gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_C09_A034 3', mRNA sequence
Length = 835
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 376 KVVVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 272
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 451 SRVSALFSGTQDKCVACGKTVYPIEKV 371
>gb|CX649932.1|CX649932 COLD1_42_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_A05_A029 5', mRNA sequence
Length = 821
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 453 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 557
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 378 SRVSALFSGTQDKCVACGKTVYPIEKV 458
>gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_B08_A029 5', mRNA sequence
Length = 816
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 423 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 527
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 348 SRVSALFSGTQDKCVACGKTVYPIEKV 428
>gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_A06_A029 5', mRNA sequence
Length = 799
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 417 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 521
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 342 SRVSALFSGTQDKCVACGKTVYPIEKV 422
>gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B11_A029 5', mRNA sequence
Length = 788
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 458 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 562
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 383 SRVSALFSGTQDKCVACGKTVYPIEKV 463
>gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_A04_A029 3', mRNA sequence
Length = 781
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 269 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 165
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 344 SRVSALFSGTQDKCVACGKTVYPIEKV 264
>gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_H07_A029 5', mRNA sequence
Length = 775
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 422 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 526
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 347 SRVSALFSGTQDKCVACGKTVYPIEKV 427
>gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_D09_A029 5', mRNA sequence
Length = 772
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 423 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 527
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 348 SRVSALFSGTQDKCVACGKTVYPIEKV 428
>gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_B07_A029 5', mRNA sequence
Length = 767
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 477 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 581
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 402 SRVSALFSGTQDKCVACGKTVYPIEKV 482
>gb|CX649863.1|CX649863 COLD1_42_A05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_A05_A029 3', mRNA sequence
Length = 763
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 163 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 267
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 88 SRVSALFSGTQDKCVACGKTVYPIEKV 168
>gb|DR693161.1|DR693161 EST1083249 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADV56 3' end, mRNA sequence
Length = 760
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 487 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 591
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 412 SRVSALFSGTQDKCVACGKTVYPIEKV 492
>gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_E07_A022 5', mRNA sequence
Length = 752
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 403 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 507
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 328 SRVSALFSGTQDKCVACGKTVYPIEKV 408
>gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_C03_A029 5', mRNA sequence
Length = 746
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 438 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 542
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 363 SRVSALFSGTQDKCVACGKTVYPIEKV 443
>gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_F11_A029 5', mRNA sequence
Length = 744
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 450 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 554
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 375 SRVSALFSGTQDKCVACGKTVYPIEKV 455
>gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_E03_A034 5', mRNA sequence
Length = 745
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 405 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 509
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 330 SRVSALFSGTQDKCVACGKTVYPIEKV 410
>gb|CV034499.1|CV034499 RTNACL1_9_A04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_A04_A029 5', mRNA sequence
Length = 742
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 549 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 445
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 624 SRVSALFSGTQDKCVACGKTVYPIEKV 544
>gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_B07_A029 5', mRNA sequence
Length = 723
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 372 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 476
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 297 SRVSALFSGTQDKCVACGKTVYPIEKV 377
>gb|CX647213.1|CX647213 COLD1_14_H08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_14_H08_A029 3', mRNA sequence
Length = 719
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 114 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 218
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 39 SRVSALFSGTQDKCVACGKTVYPIEKV 119
>gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099G08 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 709
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 482 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 586
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 407 SRVSALFSGTQDKCVACGKTVYPIEKV 487
>gb|DR060364.1|DR060364 RTNIT1_27_H05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_H05_A029 3', mRNA sequence
Length = 701
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 167 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 271
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 92 SRVSALFSGTQDKCVACGKTVYPIEKV 172
>gb|CF664799.1|CF664799 RTCNT1_12_B07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_B07_A029 3', mRNA sequence
Length = 700
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 197 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 301
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 122 SRVSALFSGTQDKCVACGKTVYPIEKV 202
>gb|DR072291.1|DR072291 RTDK1_25_G03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_G03_A029 3', mRNA sequence
Length = 693
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 100 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 204
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 25 SRVSALFSGTQDKCVACGKTVYPIEKV 105
>gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_G09_A021 5', mRNA sequence
Length = 678
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 517 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 621
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 442 SRVSALFSGTQDKCVACGKTVYPIEKV 522
>gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_F01_A029 5', mRNA sequence
Length = 654
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 520 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 624
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 445 SRVSALFSGTQDKCVACGKTVYPIEKV 525
>gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E07_A029 5', mRNA sequence
Length = 642
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 371 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 475
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 296 SRVSALFSGTQDKCVACGKTVYPIEKV 376
>gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_E11_A021 3', mRNA sequence
Length = 639
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / -1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 165 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 61
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 240 SRVSALFSGTQDKCVACGKTVYPIEKV 160
>gb|BX679950.1|BX679950 BX679950 RS Pinus pinaster cDNA clone RS36H02, mRNA sequence
Length = 636
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 368 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 472
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 293 SRVSALFSGTQDKCVACGKTVYPIEKV 373
>gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_H07_A034 5', mRNA sequence
Length = 623
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 477 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 581
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 402 SRVSALFSGTQDKCVACGKTVYPIEKV 482
>gb|BX678800.1|BX678800 BX678800 RS Pinus pinaster cDNA clone RS15C09, mRNA sequence
Length = 598
Score = 76.7 bits (161), Expect(2) = 3e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 369 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 473
Score = 47.3 bits (97), Expect(2) = 3e-022
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 294 SRVSALFSGTQDKCVACGKTVYPIEKV 374
>gb|BM133515.1|BM133515 NXLV_008_B01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_008_B01 5' similar to Arabidopsis thaliana
sequence At2g39900 putative LIM-domain protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 574
Score = 77.1 bits (162), Expect(2) = 4e-022
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+L
Sbjct: 121 EVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 225
Score = 46.4 bits (95), Expect(2) = 4e-022
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E V
Sbjct: 46 SRVSALFSGTQDKCVACGKTVYPIEEV 126
>gb|DR694175.1|DR694175 EST1084265 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE904 3' end, mRNA sequence
Length = 842
Score = 74.8 bits (157), Expect(2) = 1e-021
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CF+CCHGGC ISPSNY+AHEG+L
Sbjct: 529 KVAVDGTSYHRPCFECCHGGCVISPSNYVAHEGRL 633
Score = 47.3 bits (97), Expect(2) = 1e-021
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 454 SRVSALFSGTQDKCVACGKTVYPIEKV 534
>gb|DT638620.1|DT638620 EST1153551 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH37 3' end, mRNA sequence
Length = 839
Score = 74.8 bits (157), Expect(2) = 1e-021
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CF+CCHGGC ISPSNY+AHEG+L
Sbjct: 537 KVAVDGTSYHRPCFECCHGGCVISPSNYVAHEGRL 641
Score = 47.3 bits (97), Expect(2) = 1e-021
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 462 SRVSALFSGTQDKCVACGKTVYPIEKV 542
>gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035C01 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 666
Score = 74.8 bits (157), Expect(2) = 1e-021
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGK 5
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG+
Sbjct: 564 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGR 665
Score = 47.3 bits (97), Expect(2) = 1e-021
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 489 SRVSALFSGTQDKCVACGKTVYPIEKV 569
>gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_D03_A022 5', mRNA
sequence
Length = 756
Score = 73.5 bits (154), Expect(2) = 3e-021
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V V+ T YH+ CFKCCHGGC ISPS Y+AHEG+L
Sbjct: 462 KVAVDGTSYHRPCFKCCHGGCVISPSXYVAHEGRL 566
Score = 47.3 bits (97), Expect(2) = 3e-021
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++KCV C KTVYP E+V
Sbjct: 387 SRVSALFSGTQDKCVACGKTVYPIEKV 467
>gb|BX678836.1|BX678836 BX678836 RS Pinus pinaster cDNA clone RS15G06, mRNA sequence
Length = 468
Score = 73.9 bits (155), Expect(2) = 9e-021
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEG 8
+V V+ T YH+ CFKCCHGGC ISPSNY+AHEG
Sbjct: 370 KVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEG 468
Score = 44.6 bits (91), Expect(2) = 9e-021
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
++VS+ F+GT++ CV C KTVYP E+V
Sbjct: 295 SRVSALFSGTQDTCVACGKTVYPIEKV 375
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 234,131,556
Number of Sequences: 355925
Number of extensions: 3050993
Number of successful extensions: 63931
Number of sequences better than 1.0e-020: 49
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 5189802025
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)