TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 152 2e-036
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 152 2e-036
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 152 2e-036
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 152 2e-036
gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus mag... 150 1e-035
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 150 1e-035
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 149 2e-035
gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compr... 142 2e-033
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 140 7e-033
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 140 7e-033
gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root ... 140 7e-033
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 140 7e-033
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 140 7e-033
gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciat... 140 7e-033
gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciat... 140 7e-033
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 140 7e-033
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 140 7e-033
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 140 7e-033
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 140 7e-033
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 140 7e-033
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 140 7e-033
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 140 7e-033
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 140 7e-033
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 139 2e-032
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 138 3e-032
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 138 4e-032
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 138 5e-032
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 138 5e-032
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 138 5e-032
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 138 5e-032
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 138 5e-032
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 138 5e-032
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 137 7e-032
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 137 7e-032
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 137 7e-032
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 137 7e-032
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 137 7e-032
dbj|BD236020.1| Materials and method for modification of pl... 137 7e-032
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 137 7e-032
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 137 7e-032
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 137 7e-032
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 137 7e-032
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 137 7e-032
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 137 7e-032
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 137 7e-032
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 137 7e-032
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 137 7e-032
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 137 7e-032
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 137 7e-032
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 137 7e-032
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 137 7e-032
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 137 7e-032
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 137 7e-032
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 137 7e-032
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 137 7e-032
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 137 7e-032
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 137 7e-032
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 137 7e-032
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 137 7e-032
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 137 7e-032
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 137 7e-032
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 137 7e-032
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 137 7e-032
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 137 7e-032
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 137 7e-032
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 137 7e-032
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 137 7e-032
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 137 7e-032
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 137 7e-032
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 137 7e-032
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 137 7e-032
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 137 7e-032
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 137 7e-032
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 137 7e-032
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 137 7e-032
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 137 7e-032
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 137 7e-032
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 137 7e-032
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 137 7e-032
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 137 7e-032
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 137 7e-032
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 137 7e-032
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 137 7e-032
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 137 7e-032
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 137 7e-032
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 137 7e-032
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 137 7e-032
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 137 7e-032
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 137 7e-032
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 137 7e-032
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 137 7e-032
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 137 7e-032
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 137 7e-032
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 137 7e-032
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 137 7e-032
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 137 7e-032
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 137 7e-032
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 137 7e-032
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 137 7e-032
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 137 7e-032
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 137 7e-032
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 137 7e-032
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 137 7e-032
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 137 7e-032
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 133 9e-031
gb|CX651410.1|CX651410 COLD1_52_E07.b1_A029 Root cold Pinus... 129 2e-029
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 128 4e-029
gb|BQ634680.1|BQ634680 NXRV072_A01_F NXRV (Nsf Xylem Root w... 127 7e-029
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 127 7e-029
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 127 1e-028
gb|BF517850.1|BF517850 NXSI_029_A11_F NXSI (Nsf Xylem Side ... 125 4e-028
gb|BF610064.1|BF610064 NXSI_054_C11_F NXSI (Nsf Xylem Side ... 125 4e-028
gb|BM427893.1|BM427893 NXRV_005_H06_F NXRV (Nsf Xylem Root ... 124 7e-028
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 122 3e-027
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 122 3e-027
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 122 3e-027
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 122 3e-027
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 122 3e-027
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 122 3e-027
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 122 3e-027
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 122 3e-027
gb|BF778814.1|BF778814 NXSI_087_D09_F NXSI (Nsf Xylem Side ... 121 5e-027
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 120 1e-026
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 120 1e-026
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 118 4e-026
gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciat... 117 6e-026
gb|CO369885.1|CO369885 RTK1_55_A04.b1_A029 Roots minus pota... 117 6e-026
gb|CX647876.1|CX647876 COLD1_25_C03.b1_A029 Root cold Pinus... 117 6e-026
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 117 6e-026
gb|DR089385.1|DR089385 RTAL1_8_G12.b1_A029 Roots plus added... 117 6e-026
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 117 6e-026
gb|DR744391.1|DR744391 RTCU1_22_E01.b1_A029 Roots plus adde... 117 6e-026
gb|DR746030.1|DR746030 RTCU1_34_F01.b1_A029 Roots plus adde... 117 6e-026
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 117 6e-026
gb|BM493879.1|BM493879 NXLV_071_A06_F NXLV (Nsf Xylem Late ... 114 5e-025
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 113 1e-024
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 113 1e-024
gb|BQ696934.1|BQ696934 NXPV_047_A09_F NXPV (Nsf Xylem Plani... 113 1e-024
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 112 3e-024
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 111 5e-024
gb|BQ695964.1|BQ695964 NXPV_034_H04_F NXPV (Nsf Xylem Plani... 111 5e-024
gb|BQ698119.1|BQ698119 NXPV_064_G05_F NXPV (Nsf Xylem Plani... 111 5e-024
gb|BQ698366.1|BQ698366 NXPV_069_A10_F NXPV (Nsf Xylem Plani... 111 5e-024
gb|DR163407.1|DR163407 RTFE1_42_F04.g1_A029 Roots minus iro... 111 7e-024
gb|BG832804.1|BG832804 NXPV_080_B12_F NXPV (Nsf Xylem Plani... 110 1e-023
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 109 2e-023
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 105 3e-022
gb|BQ654688.1|BQ654688 NXRV084_D02_F NXRV (Nsf Xylem Root w... 82 3e-022
gb|BF186257.1|BF186257 NXCI_135_B10_F NXCI (Nsf Xylem Compr... 103 1e-021
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 100 7e-021
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 152 bits (327), Expect = 2e-036
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRI+PF+A+ DGP LEE
Sbjct: 421 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRINPFIARSDGPTLEE 600
Query: 187 CGLDCN 204
CGLDC+
Sbjct: 601 CGLDCD 618
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 152 bits (327), Expect = 2e-036
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRI+PF+A+ DGP LEE
Sbjct: 516 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRINPFIARSDGPTLEE 695
Query: 187 CGLDCN 204
CGLDC+
Sbjct: 696 CGLDCD 713
>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH43 3' end, mRNA sequence
Length = 770
Score = 152 bits (327), Expect = 2e-036
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRI+PF+A+ DGP LEE
Sbjct: 176 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRINPFIARSDGPTLEE 355
Query: 187 CGLDCN 204
CGLDC+
Sbjct: 356 CGLDCD 373
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 152 bits (327), Expect = 2e-036
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRI+PF+A+ DGP LEE
Sbjct: 429 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRINPFIARSDGPTLEE 608
Query: 187 CGLDCN 204
CGLDC+
Sbjct: 609 CGLDCD 626
>gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_10_E11_A029 5', mRNA sequence
Length = 700
Score = 150 bits (322), Expect = 1e-035
Identities = 55/66 (83%), Positives = 65/66 (98%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+G+QNRTPTIVIVWS+LLAS+FSL+WVRI+PF+++ DGP+LEE
Sbjct: 111 FFAFWVIVHLYPFLKGLMGKQNRTPTIVIVWSVLLASLFSLIWVRINPFISRGDGPVLEE 290
Query: 187 CGLDCN 204
CGLDCN
Sbjct: 291 CGLDCN 308
>gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_F04_A029 3', mRNA sequence
Length = 835
Score = 150 bits (322), Expect = 1e-035
Identities = 55/66 (83%), Positives = 65/66 (98%)
Frame = +1 / -3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+G+QNRTPTIVIVWS+LLAS+FSL+WVRI+PF+++ DGP+LEE
Sbjct: 632 FFAFWVIVHLYPFLKGLMGKQNRTPTIVIVWSVLLASLFSLIWVRINPFISRGDGPVLEE 453
Query: 187 CGLDCN 204
CGLDCN
Sbjct: 452 CGLDCN 435
>gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_F11 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 149 bits (320), Expect = 2e-035
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRI+PF+A+ DGP LEE
Sbjct: 123 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRINPFIARSDGPTLEE 302
Query: 187 CGLDCN 204
CGL C+
Sbjct: 303 CGLXCD 320
>gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_082_D03 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 142 bits (305), Expect = 2e-033
Identities = 52/66 (78%), Positives = 62/66 (93%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+G+QNRTPTIVI WS+LLAS+FSL+WVRI+PF+++ DGP+LEE
Sbjct: 8 FFAFWVIVHLYPFLKGLMGKQNRTPTIVIXWSVLLASLFSLIWVRINPFISRGDGPVLEE 187
Query: 187 CGLDCN 204
CG CN
Sbjct: 188 CGXXCN 205
>gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070C12 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 650
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 333 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 512
Query: 187 CGLDC 201
CG+DC
Sbjct: 513 CGVDC 527
>gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097E03 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 671
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 244 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 423
Query: 187 CGLDC 201
CG+DC
Sbjct: 424 CGVDC 438
>gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_008_A09 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 164 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 343
Query: 187 CGLDC 201
CG+DC
Sbjct: 344 CGVDC 358
>gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_C10_A022 5', mRNA sequence
Length = 624
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 395 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 216
Query: 187 CGLDC 201
CG+DC
Sbjct: 215 CGVDC 201
>gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_D11_A029 3', mRNA sequence
Length = 667
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 226 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 405
Query: 187 CGLDC 201
CG+DC
Sbjct: 406 CGVDC 420
>gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 117C02 similar to Cellulose synthase
catalytic subunit (EC 2.4.1.12), mRNA sequence
Length = 500
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 22 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 201
Query: 187 CGLDC 201
CG+DC
Sbjct: 202 CGVDC 216
>gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 117D02 similar to Cellulose synthase
catalytic subunit (EC 2.4.1.12), mRNA sequence
Length = 478
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 22 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 201
Query: 187 CGLDC 201
CG+DC
Sbjct: 202 CGVDC 216
>gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_B01_A029 3', mRNA sequence
Length = 876
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 413 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 592
Query: 187 CGLDC 201
CG+DC
Sbjct: 593 CGVDC 607
>gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_E03_A029 5', mRNA sequence
Length = 847
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 432 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 253
Query: 187 CGLDC 201
CG+DC
Sbjct: 252 CGVDC 238
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 3034 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 3213
Query: 187 CGLDC 201
CG+DC
Sbjct: 3214 CGVDC 3228
>gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mRNA, partial cds
Length = 1258
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 769 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 948
Query: 187 CGLDC 201
CG+DC
Sbjct: 949 CGVDC 963
>gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRNA, partial cds
Length = 1989
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 1328 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 1507
Query: 187 CGLDC 201
CG+DC
Sbjct: 1508 CGVDC 1522
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 1886 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 2065
Query: 187 CGLDC 201
CG+DC
Sbjct: 2066 CGVDC 2080
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 2107 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 2286
Query: 187 CGLDC 201
CG+DC
Sbjct: 2287 CGVDC 2301
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 140 bits (301), Expect = 7e-033
Identities = 53/65 (81%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFA WVI+HLYPFLKGL+GRQNRTPTIVI+WSILLASIFSL+WVRIDPFL K +GP+L++
Sbjct: 1774 FFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQ 1953
Query: 187 CGLDC 201
CG+DC
Sbjct: 1954 CGVDC 1968
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 139 bits (298), Expect = 2e-032
Identities = 54/65 (83%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVRIDPF + GP L++
Sbjct: 3742 FFAFWVIVHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTRIKGPDLQQ 3921
Query: 187 CGLDC 201
CG++C
Sbjct: 3922 CGINC 3936
>gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clone AS01F10 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 469
Score = 138 bits (297), Expect = 3e-032
Identities = 52/67 (77%), Positives = 62/67 (92%)
Frame = +1 / -3
Query: 1 STFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLL 180
++FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L
Sbjct: 395 NSFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDL 216
Query: 181 EECGLDC 201
++CG++C
Sbjct: 215 QQCGINC 195
>gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_136_D09 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 483
Score = 138 bits (296), Expect = 4e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 134 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKXKGPDTKQ 313
Query: 187 CGLDC 201
CG++C
Sbjct: 314 CGINC 328
>gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_G10_A022 5', mRNA sequence
Length = 695
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 234 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 413
Query: 187 CGLDC 201
CG++C
Sbjct: 414 CGINC 428
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 506 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 685
Query: 187 CGLDC 201
CG++C
Sbjct: 686 CGINC 700
>gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 3', mRNA sequence
Length = 797
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 278 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 99
Query: 187 CGLDC 201
CG++C
Sbjct: 98 CGINC 84
>gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 5', mRNA sequence
Length = 744
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 540 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 361
Query: 187 CGLDC 201
CG++C
Sbjct: 360 CGINC 346
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 3004 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 3183
Query: 187 CGLDC 201
CG++C
Sbjct: 3184 CGINC 3198
>gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 489
Score = 138 bits (295), Expect = 5e-032
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +1 / -1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVRIDPF + GP L++
Sbjct: 309 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTQIKGPDLQQ 130
Query: 187 CGLDC 201
CG++C
Sbjct: 129 CGINC 115
>gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_C07 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 48 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 227
Query: 187 CGLDC 201
CG++C
Sbjct: 228 CGINC 242
>gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 546
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 152 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 331
Query: 187 CGLDC 201
CG++C
Sbjct: 332 CGINC 346
>gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_H04 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 101 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 280
Query: 187 CGLDC 201
CG++C
Sbjct: 281 CGINC 295
>gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_052_F10 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 101 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 280
Query: 187 CGLDC 201
CG++C
Sbjct: 281 CGINC 295
>gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_C08_A029 5', mRNA sequence
Length = 789
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / -2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 707 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 528
Query: 187 CGLDC 201
CG++C
Sbjct: 527 CGINC 513
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +3
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 3210 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 3389
Query: 187 CGLDC 201
CG++C
Sbjct: 3390 CGINC 3404
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 3226 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 3405
Query: 187 CGLDC 201
CG++C
Sbjct: 3406 CGINC 3420
>gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
>gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose synthase gene, partial cds
Length = 452
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 187 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 366
Query: 187 CGLDC 201
CG++C
Sbjct: 367 CGINC 381
>gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
>gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose synthase gene, partial cds
Length = 452
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 187 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 366
Query: 187 CGLDC 201
CG++C
Sbjct: 367 CGINC 381
>gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
>gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose synthase gene, partial cds
Length = 452
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 187 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 366
Query: 187 CGLDC 201
CG++C
Sbjct: 367 CGINC 381
>gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
>gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose synthase gene, partial cds
Length = 452
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 187 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 366
Query: 187 CGLDC 201
CG++C
Sbjct: 367 CGINC 381
>gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
>gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose synthase gene, partial cds
Length = 452
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 187 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 366
Query: 187 CGLDC 201
CG++C
Sbjct: 367 CGINC 381
>gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose synthase genes, partial cds
Length = 1023
Score = 137 bits (294), Expect = 7e-032
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +1 / +2
Query: 7 FFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKDDGPLLEE 186
FFAFWVIVHLYPFLKGL+GRQNRTPTIV++WSILLAS+FSL WVRIDPFL+K GP ++
Sbjct: 758 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDPFLSKVKGPDTKQ 937
Query: 187 CGLDC 201
CG++C
Sbjct: 938 CGINC 952
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 433,952,026
Number of Sequences: 355925
Number of extensions: 7327162
Number of successful extensions: 60100
Number of sequences better than 1.0e-020: 189
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9219917295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)