TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 171 2e-077
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 111 2e-069
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 109 8e-069
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 163 1e-068
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 106 2e-066
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 106 2e-066
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 106 2e-065
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 136 3e-065
gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo li... 139 2e-064
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 96 5e-064
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 106 2e-061
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 236 3e-061
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 106 6e-061
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 106 3e-060
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 146 9e-056
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 146 1e-054
gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus adde... 137 2e-054
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 165 2e-052
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 106 5e-050
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 146 9e-049
gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pin... 117 4e-045
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 109 4e-044
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 106 4e-044
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 111 7e-044
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 94 7e-044
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 100 1e-043
gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus... 117 3e-043
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 106 4e-043
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 101 4e-043
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 106 1e-041
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 151 3e-041
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 106 4e-041
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 165 5e-041
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 97 9e-041
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 163 2e-040
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 136 3e-040
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 165 5e-040
gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pin... 164 9e-040
gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus ad... 164 9e-040
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 106 1e-039
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 95 2e-039
gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control P... 162 3e-039
gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus add... 161 6e-039
gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clon... 160 1e-038
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 106 4e-038
gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pin... 134 9e-038
gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo li... 82 2e-037
gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus adde... 122 3e-037
gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus ad... 124 1e-036
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 149 4e-036
gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus adde... 151 7e-036
gb|CF390174.1|CF390174 RTDR2_12_E07.g1_A021 Loblolly pine r... 123 2e-035
gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus... 149 5e-035
gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip libra... 142 5e-035
gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C fo... 148 6e-035
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 100 1e-034
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 100 1e-034
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 119 2e-034
gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added... 146 3e-034
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 144 1e-033
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 109 3e-033
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 143 3e-033
gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus... 95 1e-032
gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip libra... 70 5e-030
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 123 7e-030
gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus ad... 131 1e-029
gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clon... 111 1e-029
gb|BQ697001.1|BQ697001 NXPV_048_A07_F NXPV (Nsf Xylem Plani... 92 2e-028
gb|CX651881.1|CX651881 COLD1_55_A04.g1_A029 Root cold Pinus... 126 4e-028
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 119 6e-028
gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control P... 123 2e-027
gb|AI725219.1|AI725219 1238 PtIFG2 Pinus taeda cDNA clone 9... 94 2e-027
gb|BG318466.1|BG318466 NXPV_013_H10_F NXPV (Nsf Xylem Plani... 93 4e-027
gb|BQ695893.1|BQ695893 NXPV_033_H04_F NXPV (Nsf Xylem Plani... 93 4e-027
gb|BQ696465.1|BQ696465 NXPV_041_F02_F NXPV (Nsf Xylem Plani... 93 4e-027
gb|BQ697291.1|BQ697291 NXPV_055_C02_F NXPV (Nsf Xylem Plani... 93 4e-027
gb|CO158951.1|CO158951 FLD1_10_G08.b1_A029 Root flooded Pin... 95 7e-027
gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine ro... 121 9e-027
gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine ro... 120 2e-026
gb|DR088584.1|DR088584 RTAL1_3_A08.b1_A029 Roots plus added... 120 2e-026
gb|BE996793.1|BE996793 NXCI_101_B08_F NXCI (Nsf Xylem Compr... 119 3e-026
gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine ro... 100 3e-026
gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus adde... 60 4e-026
gb|DR110861.1|DR110861 RTS1_13_B02.g1_A029 Roots minus sulf... 106 9e-026
gb|CF399742.1|CF399742 RTDS3_25_D01.g1_A022 Drought-stresse... 116 2e-025
gb|BI397619.1|BI397619 NXPV_102_C02_F NXPV (Nsf Xylem Plani... 116 3e-025
gb|CD023078.1|CD023078 NXPV_098_G09_F NXPV (Nsf Xylem Plani... 114 1e-024
gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus adde... 111 7e-024
gb|CF478150.1|CF478150 RTWW3_19_D01.b1_A022 Well-watered lo... 111 1e-023
gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine ro... 110 2e-023
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 109 3e-023
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 109 3e-023
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 109 3e-023
gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus m... 108 6e-023
gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus adde... 107 1e-022
gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response R... 107 1e-022
gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2... 107 2e-022
gb|BI643956.1|BI643956 NXPV_133_B02_F NXPV (Nsf Xylem Plani... 104 1e-021
gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus adde... 104 1e-021
gb|BG318692.1|BG318692 NXPV_015_G08_F NXPV (Nsf Xylem Plani... 104 2e-021
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 103 2e-021
gb|DR118221.1|DR118221 RTMG1_11_H09.g1_A029 Roots minus mag... 103 3e-021
gb|BG319401.1|BG319401 NXPV_027_E09_F NXPV (Nsf Xylem Plani... 72 1e-020
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 171 bits (367), Expect(2) = 2e-077
Identities = 65/96 (67%), Positives = 77/96 (80%)
Frame = -2 / +3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGERAASEWL+IVPWG K L ++ ++YN P IYVTENGMD+ED + LDQ LNDT
Sbjct: 465 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDT 644
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFE 386
RV YFKGYL ++A+AI +GADVRGYFAWS +DNFE
Sbjct: 645 KRVNYFKGYLKALAEAIWEGADVRGYFAWSLIDNFE 752
Score = 139 bits (298), Expect(2) = 2e-077
Identities = 53/98 (54%), Positives = 71/98 (72%)
Frame = -2 / +3
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
VD+YR+KF+ QGG +G+ VD E EPF++ D+ AAQRR +FQ GW+LDPIYFGDYP
Sbjct: 96 VDIYRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPA 275
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
MR++LG LP FS + +R DF+G+NHYT+R +
Sbjct: 276 IMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTTRYV 389
Score = 93.2 bits (197), Expect(2) = 9e-038
Identities = 48/97 (49%), Positives = 54/97 (55%)
Frame = +3 / -1
Query: 384 HSKLSRNDHAKYPRTSAPSLIACATELRYPLK*PTLVVSFRTWXXXXXXXXXXXXXXXVT 563
HSKLS D AK PRTSAPS +A A + PLK* TL VS R W VT
Sbjct: 754 HSKLSIRDQAK*PRTSAPSQMASAKAFK*PLK*FTLFVSLRAWSSNVISESSSSIPFSVT 575
Query: 564 *IAGLLYFFAI*LSDL*RPQGTMKSHSDAALSPIFSP 674
*I GLLY + +P GT+ SHSDAALSP+ P
Sbjct: 574 *IGGLLYLSVNHFNTFRKPHGTI*SHSDAALSPMVFP 464
Score = 84.9 bits (179), Expect(2) = 9e-038
Identities = 47/94 (50%), Positives = 55/94 (58%)
Frame = +3 / -1
Query: 762 V**FTPTKSILFLMNSLSFSEKVGRSLPSR*RMLSG*SPKYIGSRYHPS*KSSLRCAAIW 941
V** +P KS + S E G PS RM++G*SPKYIGSR P+* S CAA
Sbjct: 376 V**LSPRKSDDPRNTATSSGEN*GSRSPSFFRMIAG*SPKYIGSRNQPN*NSRRLCAASL 197
Query: 942 SSTFSENGSVHSQSTTNPTSPPCAALNFLL*TST 1043
S + S GS HS ST P +PPC + NF L* ST
Sbjct: 196 SPSASVKGSAHSPSTVIPITPPCLS*NFFL*IST 95
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 111 bits (237), Expect(4) = 2e-069
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = -2 / -1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V +YR K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+
Sbjct: 831 VKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPD 652
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP F++K + ++ ID++GVN YT+
Sbjct: 651 SMVEIVGTRLPKFTKKQSQMVKGSIDYLGVNQYTA 547
Score = 106 bits (227), Expect(4) = 2e-069
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / -1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 330 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 151
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 150 GVVYVDF 130
Score = 71.6 bits (150), Expect(4) = 2e-069
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 525 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 346
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 345 SENGMDD 325
Score = 30.9 bits (61), Expect(4) = 2e-069
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 123 LKRYPKMSAYWFSKLLQ 73
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 109 bits (233), Expect(4) = 8e-069
Identities = 40/95 (42%), Positives = 66/95 (69%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V +YR K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+
Sbjct: 118 VKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPD 297
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP F+++ + ++ ID++GVN YT+
Sbjct: 298 SMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTA 402
Score = 106 bits (227), Expect(4) = 8e-069
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 619 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 798
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 799 GVVYVDF 819
Score = 71.6 bits (150), Expect(4) = 8e-069
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 424 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 603
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 604 SENGMDD 624
Score = 30.9 bits (61), Expect(4) = 8e-069
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 826 LKRYPKMSAYWFSKLLQ 876
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 163 bits (351), Expect(2) = 1e-068
Identities = 63/132 (47%), Positives = 89/132 (67%)
Frame = -2 / +3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I + ENG E ++ S+TL + LND
Sbjct: 1287 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIIAENGYPESEESSSTLQENLNDV 1466
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ ++ AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 1467 RRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 1646
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 1647 KLSAQWFRQFLQ 1682
Score = 117 bits (251), Expect(2) = 1e-068
Identities = 47/113 (41%), Positives = 66/113 (58%)
Frame = -2 / +3
Query: 1096 TARCYXXXXXXXXXXXXAVDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRL 917
+A Y AV+ YR K++ QGG +GLV+ EP + E++ A R L
Sbjct: 858 SAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERSAVDRIL 1037
Query: 916 DFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
F L W+LDPI FGDYP+ MR+RLGS LP+ S + +R D++G+NHYT+
Sbjct: 1038 SFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 1196
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 106 bits (227), Expect(4) = 2e-066
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +3
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 489 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 668
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 669 GVVYVDF 689
Score = 101 bits (215), Expect(4) = 2e-066
Identities = 37/89 (41%), Positives = 62/89 (69%)
Frame = -2 / +3
Query: 1024 KFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRL 845
K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+SM + +
Sbjct: 6 KYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIV 185
Query: 844 GSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
G+ LP F+++ + ++ ID++GVN YT+
Sbjct: 186 GTRLPKFTKEQSQMVKGSIDYLGVNQYTA 272
Score = 71.6 bits (150), Expect(4) = 2e-066
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +3
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 294 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 473
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 474 SENGMDD 494
Score = 30.9 bits (61), Expect(4) = 2e-066
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +3
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 696 LKRYPKMSAYWFSKLLQ 746
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 106 bits (227), Expect(4) = 2e-066
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / -1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 382 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 203
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 202 GVVYVDF 182
Score = 101 bits (215), Expect(4) = 2e-066
Identities = 37/89 (41%), Positives = 62/89 (69%)
Frame = -2 / -1
Query: 1024 KFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRL 845
K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+SM + +
Sbjct: 865 KYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIV 686
Query: 844 GSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
G+ LP F+++ + ++ ID++GVN YT+
Sbjct: 685 GTRLPKFTKEQSQMVKGSIDYLGVNQYTA 599
Score = 71.6 bits (150), Expect(4) = 2e-066
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 577 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 398
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 397 SENGMDD 377
Score = 30.9 bits (61), Expect(4) = 2e-066
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 175 LKRYPKMSAYWFSKLLQ 125
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 106 bits (227), Expect(4) = 2e-065
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 478 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 657
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 658 GVVYVDF 678
Score = 98.2 bits (208), Expect(4) = 2e-065
Identities = 36/84 (42%), Positives = 59/84 (70%)
Frame = -2 / +1
Query: 1009 QGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLP 830
Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+SM + +G+ LP
Sbjct: 10 QKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLP 189
Query: 829 TFSEKDKEFMRNKIDFVGVNHYTS 758
F+++ + ++ ID++GVN YT+
Sbjct: 190 KFTKEQSQMVKGSIDYLGVNQYTA 261
Score = 71.6 bits (150), Expect(4) = 2e-065
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 283 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 462
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 463 SENGMDD 483
Score = 30.9 bits (61), Expect(4) = 2e-065
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 685 LKRYPKMSAYWFSKLLQ 735
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 136 bits (292), Expect(3) = 3e-065
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = -2 / +1
Query: 535 DDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 356
++ +LD+ LNDT R+ Y +L+ + QAI++GADVRG+FAWS +DNFEW GYT RFG
Sbjct: 457 ENSDPSLDEALNDTWRINYCSEHLHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFG 636
Query: 355 IVYVDYKNGLSRHPKASALWFSRLL 281
+Y+DYK+GL R+PKASA W+ R L
Sbjct: 637 FIYIDYKDGLKRYPKASAHWYKRFL 711
Score = 102 bits (217), Expect(3) = 3e-065
Identities = 38/83 (45%), Positives = 57/83 (68%)
Frame = -2 / +1
Query: 979 CECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFM 800
C T P+S + +DQ AAQR +DF LGW++DP+ GDYP +MR RLG L F+E++ E +
Sbjct: 7 CNWTYPYSSSQDDQNAAQRAVDFMLGWFIDPVTSGDYPFTMRDRLGDRLLKFTEQESEQL 186
Query: 799 RNKIDFVGVNHYTSRLIAHLQNP 731
+ DF+G+N+YTS+ + +P
Sbjct: 187 KGSFDFLGMNYYTSQYAINCLDP 255
Score = 49.6 bits (102), Expect(3) = 3e-065
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -2 / +1
Query: 649 ASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
AS WL++ GL L YI ++YNNP I++TENG+++
Sbjct: 337 ASFWLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 447
>gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO78 3' end, mRNA sequence
Length = 706
Score = 139 bits (298), Expect(2) = 2e-064
Identities = 53/98 (54%), Positives = 71/98 (72%)
Frame = -2 / +2
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
VD+YR+KF+ QGG +G+ VD E EPF++ D+ AAQRR +FQ GW+LDPIYFGDYP
Sbjct: 104 VDIYRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPA 283
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
MR++LG LP FS + +R DF+G+NHYT+R +
Sbjct: 284 IMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTTRYV 397
Score = 127 bits (272), Expect(2) = 2e-064
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = -2 / +2
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGERAASEWL+IVPWG K L ++ ++YN P IYVTENGMD+ED + LDQ LNDT
Sbjct: 473 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDT 652
Query: 493 TRVGYFKGYLNSVAQ 449
RV YFKGYL ++A+
Sbjct: 653 KRVNYFKGYLKALAE 697
Score = 84.9 bits (179), Expect(2) = 4e-028
Identities = 47/94 (50%), Positives = 55/94 (58%)
Frame = +3 / -2
Query: 762 V**FTPTKSILFLMNSLSFSEKVGRSLPSR*RMLSG*SPKYIGSRYHPS*KSSLRCAAIW 941
V** +P KS + S E G PS RM++G*SPKYIGSR P+* S CAA
Sbjct: 384 V**LSPRKSDDPRNTATSSGEN*GSRSPSFFRMIAG*SPKYIGSRNQPN*NSRRLCAASL 205
Query: 942 SSTFSENGSVHSQSTTNPTSPPCAALNFLL*TST 1043
S + S GS HS ST P +PPC + NF L* ST
Sbjct: 204 SPSASVKGSAHSPSTVIPITPPCLS*NFFL*IST 103
Score = 60.6 bits (126), Expect(2) = 4e-028
Identities = 31/68 (45%), Positives = 35/68 (51%)
Frame = +3 / -2
Query: 471 PLK*PTLVVSFRTWXXXXXXXXXXXXXXXVT*IAGLLYFFAI*LSDL*RPQGTMKSHSDA 650
PLK* TL VS R W VT*I GLLY + +P GT+ SHSDA
Sbjct: 675 PLK*FTLFVSLRAWSSNVISESSSSIPFSVT*IGGLLYLSVNHFNTFRKPHGTI*SHSDA 496
Query: 651 ALSPIFSP 674
ALSP+ P
Sbjct: 495 ALSPMVFP 472
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 95.9 bits (203), Expect(3) = 5e-064
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = -2 / +2
Query: 934 AAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
A QR DFQLGW++DP+ FGDYP SMR+R+G+ LP FS ++ ++ +DFVG+NHYT+
Sbjct: 5 ATQRAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTT 181
Score = 95.5 bits (202), Expect(3) = 5e-064
Identities = 35/82 (42%), Positives = 56/82 (68%)
Frame = -2 / +2
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ +G IG++A+S WL+IVP G+ +NYI ++YNNP + +TENGMD+ ++ L L
Sbjct: 266 FKNGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNAL 445
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
ND R+ Y YL++++ AIK+
Sbjct: 446 NDQKRIKYHAHYLSNLSAAIKE 511
Score = 93.2 bits (197), Expect(3) = 5e-064
Identities = 35/61 (57%), Positives = 43/61 (70%)
Frame = -2 / +2
Query: 463 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRL 284
N A +DG +V GYF WS LDN+EWA GYT RFG+ +VDYK+ L+R+PKAS WF
Sbjct: 488 NLSAAIKEDGCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 667
Query: 283 L 281
L
Sbjct: 668 L 670
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 106 bits (227), Expect(4) = 2e-061
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / -1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 371 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 192
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 191 GVVYVDF 171
Score = 84.9 bits (179), Expect(4) = 2e-061
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = -2 / -1
Query: 946 EDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNH 767
EDQ AAQR DF +GW+L PI +G YP+SM + +G+ LP F++K + ++ ID++GVN
Sbjct: 776 EDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKKQSQMVKGSIDYLGVNQ 597
Query: 766 YTS 758
YT+
Sbjct: 596 YTA 588
Score = 71.6 bits (150), Expect(4) = 2e-061
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 566 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 387
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 386 SENGMDD 366
Score = 30.9 bits (61), Expect(4) = 2e-061
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 164 LKRYPKMSAYWFSKLLQ 114
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 236 bits (509), Expect = 3e-061
Identities = 88/133 (66%), Positives = 107/133 (80%)
Frame = -2 / +3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGERAASEWL+IVPWG K L ++ ++YN P IYVTENGMD+ED + LDQ LNDT
Sbjct: 6 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDT 185
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
RV YFKGYL ++A+AI++GADVRGYFAWS +DNFEW GYTKRFG+V+VDYK+ L R+P
Sbjct: 186 KRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYP 365
Query: 313 KASALWFSRLLKG 275
K+SA WF+ L G
Sbjct: 366 KSSAHWFTSFLHG 404
Score = 113 bits (242), Expect = 2e-024
Identities = 65/133 (48%), Positives = 71/133 (53%)
Frame = +3 / -1
Query: 276 PLSKRENHSADAFGCLDSPFL*ST*TMPNLLV*PIAHSKLSRNDHAKYPRTSAPSLIACA 455
P K N AD FG L*ST T P V*P HSKLS D AK PRTSAPSL+A A
Sbjct: 403 P*RKLVNQ*ADDFGYRLRSSL*STNTRPKRFV*P*PHSKLSIRDQAK*PRTSAPSLMASA 224
Query: 456 TELRYPLK*PTLVVSFRTWXXXXXXXXXXXXXXXVT*IAGLLYFFAI*LSDL*RPQGTMK 635
+ PLK* TL VS R W VT*I GLLY + +P GT+
Sbjct: 223 KAFK*PLK*FTLFVSLRAWSSNVISESSSSIPFSVT*IGGLLYLSVNHFNTFRKPHGTI* 44
Query: 636 SHSDAALSPIFSP 674
SHSDAALSP+ P
Sbjct: 43 SHSDAALSPMVFP 5
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 106 bits (227), Expect(4) = 6e-061
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +2
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 407 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 586
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 587 GVVYVDF 607
Score = 83.1 bits (175), Expect(4) = 6e-061
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / +2
Query: 946 EDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNH 767
EDQ AAQR DF +GW+L PI +G YP+SM + +G+ LP F+++ + ++ ID++GVN
Sbjct: 2 EDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQ 181
Query: 766 YTS 758
YT+
Sbjct: 182 YTA 190
Score = 71.6 bits (150), Expect(4) = 6e-061
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +2
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 212 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 391
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 392 SENGMDD 412
Score = 30.9 bits (61), Expect(4) = 6e-061
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +2
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 614 LKRYPKMSAYWFSKLLQ 664
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 106 bits (227), Expect(4) = 3e-060
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / -1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 354 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 175
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 174 GVVYVDF 154
Score = 80.8 bits (170), Expect(4) = 3e-060
Identities = 29/62 (46%), Positives = 45/62 (72%)
Frame = -2 / -1
Query: 943 DQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHY 764
DQ AAQR DF +GW+L PI +G YP+SM + +G+ LP F+++ + ++ ID++GVN Y
Sbjct: 756 DQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQY 577
Query: 763 TS 758
T+
Sbjct: 576 TA 571
Score = 71.6 bits (150), Expect(4) = 3e-060
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 549 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 370
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 369 SENGMDD 349
Score = 30.9 bits (61), Expect(4) = 3e-060
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 147 LKRYPKMSAYWFSKLLQ 97
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 146 bits (314), Expect(2) = 9e-056
Identities = 55/116 (47%), Positives = 80/116 (68%)
Frame = -2 / +2
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL + LNY +YNNP +Y+TE G + D+ + +L + +ND RV Y +L+ + +A
Sbjct: 389 PAGLSELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREA 568
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
I+ G+DVRGY WS +D+FEW+ G+T RFG+ YVD N L R+ +ASALWF R+L+
Sbjct: 569 IRAGSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFKRILQ 736
Score = 94.5 bits (200), Expect(2) = 9e-056
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = -2 / +2
Query: 1003 GEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTF 824
G +G + PFS+++ D+ A QR +DF+LGW+LDP+ G YPESMR+ +G LP F
Sbjct: 2 GSIGFALVANWMVPFSKSLSDKRATQRAIDFRLGWFLDPLTSGKYPESMRRLVGRRLPRF 181
Query: 823 SEKDKEFMRNKIDFVGVNHYTSR 755
S ++ + ++ DF+G N+Y ++
Sbjct: 182 SNEEAKDLKGSFDFIGFNYYITQ 250
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 146 bits (314), Expect(2) = 1e-054
Identities = 55/116 (47%), Positives = 80/116 (68%)
Frame = -2 / +1
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL + LNY +YNNP +Y+TE G + D+ + +L + +ND RV Y +L+ + +A
Sbjct: 379 PAGLSELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREA 558
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
I+ G+DVRGY WS +D+FEW+ G+T RFG+ YVD N L R+ +ASALWF R+L+
Sbjct: 559 IRAGSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFKRILQ 726
Score = 90.9 bits (192), Expect(2) = 1e-054
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = -2 / +1
Query: 964 PFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKID 785
PFS+++ D+ A QR +DF+LGW+LDP+ G YPESMR+ +G LP FS ++ + ++ D
Sbjct: 31 PFSKSLSDKRATQRAIDFRLGWFLDPLTSGKYPESMRRLVGRRLPRFSNEEAKDLKGSFD 210
Query: 784 FVGVNHYTSR 755
F+G N+Y ++
Sbjct: 211 FIGFNYYITQ 240
>gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_22_E08_A029 5', mRNA sequence
Length = 607
Score = 137 bits (294), Expect(2) = 2e-054
Identities = 52/98 (53%), Positives = 71/98 (72%)
Frame = -2 / -1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
VD++R+KF+ QGG +G+ VD E EPF++ D+ AAQRR +FQ GW+LDPIYFGDYP
Sbjct: 556 VDIFRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPA 377
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
MR++LG LP FS + +R DF+G+NHYT+R +
Sbjct: 376 IMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTTRYV 263
Score = 96.4 bits (204), Expect(2) = 2e-054
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -2 / -1
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
G IGERAASEWL+IVPWG K L ++ ++YN P IYVTENGMD+ED + LDQ L
Sbjct: 187 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQAL 17
Score = 82.6 bits (174), Expect(2) = 2e-023
Identities = 46/94 (48%), Positives = 54/94 (57%)
Frame = +3 / +3
Query: 762 V**FTPTKSILFLMNSLSFSEKVGRSLPSR*RMLSG*SPKYIGSRYHPS*KSSLRCAAIW 941
V** +P KS + S E G PS RM++G*SPKYIGSR P+* S CAA
Sbjct: 276 V**LSPRKSDDPRNTATSSGEN*GSRSPSFFRMIAG*SPKYIGSRNQPN*NSRRLCAASL 455
Query: 942 SSTFSENGSVHSQSTTNPTSPPCAALNFLL*TST 1043
S + S GS HS ST P +PPC + NF L ST
Sbjct: 456 SPSASVKGSAHSPSTVIPITPPCLS*NFFLKIST 557
Score = 47.3 bits (97), Expect(2) = 2e-023
Identities = 23/57 (40%), Positives = 27/57 (47%)
Frame = +3 / +3
Query: 504 RTWXXXXXXXXXXXXXXXVT*IAGLLYFFAI*LSDL*RPQGTMKSHSDAALSPIFSP 674
R W VT*I GLLY + +P GT+ SHSDAALSP+ P
Sbjct: 18 RAWSSNVISESSSSIPFSVT*IGGLLYLSVNHFNTFRKPHGTI*SHSDAALSPMVFP 188
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 165 bits (355), Expect(2) = 2e-052
Identities = 64/132 (48%), Positives = 89/132 (67%)
Frame = -2 / +3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND
Sbjct: 246 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 425
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 426 RRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 605
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 606 KLSAQWFRQFLQ 641
Score = 61.6 bits (128), Expect(2) = 2e-052
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = -2 / +3
Query: 886 IYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
I FGDYP+ MR+RLGS LP+ S + +R D++G+NHYT+
Sbjct: 27 IVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 155
>gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 5', mRNA sequence
Length = 687
Score = 106 bits (227), Expect(4) = 5e-050
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / -3
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 355 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 176
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 175 GVVYVDF 155
Score = 71.6 bits (150), Expect(4) = 5e-050
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -3
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 550 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 371
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 370 SENGMDD 350
Score = 46.0 bits (94), Expect(4) = 5e-050
Identities = 15/38 (39%), Positives = 28/38 (73%)
Frame = -2 / -3
Query: 871 YPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
YP+SM + +G+ LP F+++ + ++ ID++GVN YT+
Sbjct: 685 YPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTA 572
Score = 30.9 bits (61), Expect(4) = 5e-050
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 148 LKRYPKMSAYWFSKLLQ 98
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 146 bits (313), Expect(3) = 9e-049
Identities = 56/116 (48%), Positives = 81/116 (69%)
Frame = -2 / +1
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL ++Y +Y+NP IY+TE+G + D+ + L++ LND+ RV Y +L+S+ QA
Sbjct: 352 PAGLRDVISYTKHRYDNPPIYITESGYGDFDNGTTPLERALNDSKRVKYHYEHLSSLLQA 531
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
I++GADVRGY AWS LD+ EW+ GY RFG+ YVDY + L R+ +ASA WF +L+
Sbjct: 532 IREGADVRGYVAWSLLDSLEWSSGYNYRFGLHYVDYHDNLKRYARASAQWFKTILR 699
Score = 57.9 bits (120), Expect(3) = 9e-049
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = -2 / +1
Query: 898 YLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIAHLQNPND 725
+LDP+ G YP+SMR +G+ LP F+ ++ E ++ DF+G N+Y++ + NP +
Sbjct: 73 FLDPLTSGKYPDSMRXLVGTRLPQFTIEEAEELKGSFDFLGFNYYSTDFTINNPNPTN 246
Score = 29.0 bits (57), Expect(3) = 9e-049
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 940 QIAAQRRLDFQLGWYL 893
Q A QR +DF++GWY+
Sbjct: 3 QQATQRAIDFRIGWYV 50
>gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 3', mRNA sequence
Length = 718
Score = 117 bits (250), Expect(3) = 4e-045
Identities = 47/113 (41%), Positives = 66/113 (58%)
Frame = -2 / -3
Query: 1096 TARCYXXXXXXXXXXXXAVDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRL 917
+A Y AV+ YR K++ QGG +GLV+ EP + E++ A R L
Sbjct: 689 SAEPYLAAHHVLLAHASAVEKYREKYQKFQGGSIGLVISAPWYEPLENSPEERSAVDRIL 510
Query: 916 DFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
F L W+LDPI FGDYP+ MR+RLGS LP+ S + +R D++G+NHYT+
Sbjct: 509 SFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 351
Score = 66.6 bits (139), Expect(3) = 4e-045
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -2 / -3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQV 506
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL ++
Sbjct: 260 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQEI 93
Score = 36.8 bits (74), Expect(3) = 4e-045
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -2 / -2
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYF 413
LND R+ + L+ + AIK+G+DVRGYF
Sbjct: 93 LNDVRRIRFHGDCLSYLNAAIKNGSDVRGYF 1
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 109 bits (233), Expect(3) = 4e-044
Identities = 40/95 (42%), Positives = 66/95 (69%)
Frame = -2 / -2
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V +YR K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+
Sbjct: 602 VKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPD 423
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP F+++ + ++ ID++GVN YT+
Sbjct: 422 SMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTA 318
Score = 71.6 bits (150), Expect(3) = 4e-044
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -2
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 296 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 117
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 116 SENGMDD 96
Score = 36.3 bits (73), Expect(3) = 4e-044
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2 / -2
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAI 443
+D + TL LNDT RV Y+K YL ++ A+
Sbjct: 101 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAV 6
>gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 3', mRNA sequence
Length = 667
Score = 106 bits (227), Expect(4) = 4e-044
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 280 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 459
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 460 GVVYVDF 480
Score = 71.6 bits (150), Expect(4) = 4e-044
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 85 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 264
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 265 SENGMDD 285
Score = 30.9 bits (61), Expect(4) = 4e-044
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 487 LKRYPKMSAYWFSKLLQ 537
Score = 25.8 bits (50), Expect(4) = 4e-044
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -2 / +1
Query: 820 EKDKEFMRNKIDFVGVNHYTS 758
++ + ++ ID++GVN YT+
Sbjct: 1 KEQSQMVKGSIDYLGVNQYTA 63
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 111 bits (237), Expect(3) = 7e-044
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = -2 / -2
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V +YR K++ Q G++G+++D EP + + EDQ AAQR DF +GW+L PI +G YP+
Sbjct: 591 VKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPD 412
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP F++K + ++ ID++GVN YT+
Sbjct: 411 SMVEIVGTRLPKFTKKQSQMVKGSIDYLGVNQYTA 307
Score = 71.6 bits (150), Expect(3) = 7e-044
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / -2
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 285 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 106
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 105 SENGMDD 85
Score = 33.6 bits (67), Expect(3) = 7e-044
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2 / -2
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSV 455
+D + TL LNDT RV Y+K YL ++
Sbjct: 90 DDPGNVTLPAGLNDTIRVNYYKSYLQNL 7
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 94.1 bits (199), Expect(3) = 7e-044
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = -2 / +1
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ +G IG++A+S WL+IVP G+ +NYI ++YNNP + +TENGMD+ ++ L L
Sbjct: 148 FKNGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNAL 327
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
ND R+ Y YL+++ AIK+
Sbjct: 328 NDQKRIKYHAHYLSNLFAAIKE 393
Score = 93.6 bits (198), Expect(3) = 7e-044
Identities = 35/61 (57%), Positives = 43/61 (70%)
Frame = -2 / +1
Query: 463 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRL 284
N A +DG +V GYF WS LDN+EWA GYT RFG+ +VDYK+ L+R+PKAS WF
Sbjct: 370 NLFAAIKEDGCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 549
Query: 283 L 281
L
Sbjct: 550 L 552
Score = 29.0 bits (57), Expect(3) = 7e-044
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2 / +1
Query: 802 MRNKIDFVGVNHYTS 758
++ +DFVG+NHYT+
Sbjct: 19 VKGSLDFVGINHYTT 63
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 99.6 bits (211), Expect(3) = 1e-043
Identities = 35/80 (43%), Positives = 56/80 (70%)
Frame = -2 / +2
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ G IGER AS WL++VPWG+ + YI ++Y+NP I++TENG+D+ + +LD+ L
Sbjct: 149 FRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIFITENGIDDTNSPLISLDKAL 328
Query: 502 NDTTRVGYFKGYLNSVAQAI 443
DT R+ Y + YL++++ AI
Sbjct: 329 QDTKRIDYHRDYLSNLSVAI 388
Score = 86.3 bits (182), Expect(3) = 1e-043
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = -2 / +2
Query: 439 DGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALW 296
DG DVRGYF WS LDN+EW G+T RFG+ +VDY L+R+PKASA W
Sbjct: 395 DGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKASADW 538
Score = 30.4 bits (60), Expect(3) = 1e-043
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2 / +2
Query: 808 EFMRNKIDFVGVNHYTS 758
+ +R DFVG+NHYT+
Sbjct: 14 KLLRGSFDFVGINHYTT 64
>gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_E07_A029 3', mRNA sequence
Length = 753
Score = 117 bits (250), Expect(2) = 3e-043
Identities = 47/113 (41%), Positives = 66/113 (58%)
Frame = -2 / -3
Query: 1096 TARCYXXXXXXXXXXXXAVDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRL 917
+A Y AV+ YR K++ QGG +GLV+ EP + E++ A R L
Sbjct: 667 SAEPYLAAHHVLLAHASAVEKYREKYQKFQGGSIGLVISAPWYEPLENSPEERSAVDRIL 488
Query: 916 DFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
F L W+LDPI FGDYP+ MR+RLGS LP+ S + +R D++G+NHYT+
Sbjct: 487 SFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 329
Score = 79.0 bits (166), Expect(2) = 3e-043
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = -2 / -3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND
Sbjct: 238 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 59
Query: 493 TRVGYFKGYLNSVAQAIKD 437
R+ + L+ + AIK+
Sbjct: 58 RRIRFHGDCLSYLNAAIKN 2
>gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 3', mRNA sequence
Length = 761
Score = 106 bits (227), Expect(4) = 4e-043
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +2
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 254 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 433
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 434 GVVYVDF 454
Score = 71.6 bits (150), Expect(4) = 4e-043
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +2
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 59 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 238
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 239 SENGMDD 259
Score = 30.9 bits (61), Expect(4) = 4e-043
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +2
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 461 LKRYPKMSAYWFSKLLQ 511
Score = 22.6 bits (43), Expect(4) = 4e-043
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 790 IDFVGVNHYTS 758
ID++GVN YT+
Sbjct: 5 IDYLGVNQYTA 37
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 101 bits (216), Expect(2) = 4e-043
Identities = 36/82 (43%), Positives = 58/82 (70%)
Frame = -2 / +2
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ G IGER AS WL++VPWG+ S+ YI ++Y+NP I +TENG+D+ + +LD+ L
Sbjct: 95 FRKGVMIGERGASRWLYVVPWGIRSSMIYIKQRYDNPPIIITENGIDDPNSPLISLDKAL 274
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
DT R+ Y + YL++++ AI++
Sbjct: 275 QDTKRIDYHRDYLSNLSVAIRN 340
Score = 94.1 bits (199), Expect(2) = 4e-043
Identities = 35/62 (56%), Positives = 42/62 (67%)
Frame = -2 / +2
Query: 439 DGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLKGEAGTG 260
DG DVRGYF WS LDN+EW G+T RFG+ +VDYK L+R+PKASA WF L
Sbjct: 341 DGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSFLPKSKSKS 520
Query: 259 TS 254
T+
Sbjct: 521 TA 526
>gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 3', mRNA sequence
Length = 740
Score = 106 bits (227), Expect(3) = 1e-041
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +1
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 214 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 393
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 394 GVVYVDF 414
Score = 71.6 bits (150), Expect(3) = 1e-041
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +1
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 19 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 198
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 199 SENGMDD 219
Score = 30.9 bits (61), Expect(3) = 1e-041
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 421 LKRYPKMSAYWFSKLLQ 471
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 151 bits (325), Expect(2) = 3e-041
Identities = 56/116 (48%), Positives = 81/116 (69%)
Frame = -2 / +3
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL +NY +YNNP IY+TE G + D+ + L + LND+ R+ Y +L+ + Q+
Sbjct: 243 PAGLRDVINYTKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQS 422
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
IK+GADVRGY AWS +D+FEW+ GY RFG+ +VDYK+ L R+P++SA WF +L+
Sbjct: 423 IKEGADVRGYIAWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKHILR 590
Score = 37.7 bits (76), Expect(2) = 3e-041
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2 / +3
Query: 859 MRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIAHLQNP 731
+R+ + S LP F+ K+ + ++ DF+G N+YT++ NP
Sbjct: 3 VRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTTSNPNP 131
>gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 3', mRNA sequence
Length = 605
Score = 106 bits (227), Expect(3) = 4e-041
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +2
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 212 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 391
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 392 GVVYVDF 412
Score = 71.6 bits (150), Expect(3) = 4e-041
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = -2 / +2
Query: 739 QNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYV 560
Q +V YQ+ +G IG RA S WL+IVPWGL+K++ Y+ + Y NP + +
Sbjct: 17 QPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMIL 196
Query: 559 TENGMDE 539
+ENGMD+
Sbjct: 197 SENGMDD 217
Score = 29.0 bits (57), Expect(3) = 4e-041
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2 / +2
Query: 322 RHPKASALWFSRLLK 278
R+PK SA WFS+LL+
Sbjct: 425 RYPKMSAYWFSKLLQ 469
>gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D06, mRNA sequence
Length = 675
Score = 165 bits (354), Expect(2) = 5e-041
Identities = 64/132 (48%), Positives = 90/132 (68%)
Frame = -2 / +2
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER A + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + L+D
Sbjct: 131 GVSIGERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDV 310
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 311 RRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISAQKRYP 490
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 491 KLSAQWFRQFLQ 526
Score = 24.0 bits (46), Expect(2) = 5e-041
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 787 DFVGVNHYTS 758
D++G+NHYT+
Sbjct: 11 DYMGINHYTT 40
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 96.8 bits (205), Expect(2) = 9e-041
Identities = 36/82 (43%), Positives = 56/82 (68%)
Frame = -2 / +2
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ G+ IG++A+S WL+IVP G+ +NYI ++YNNP + +TENGMD+ +D L + L
Sbjct: 5 FKDGKAIGDKASSIWLYIVPQGIRSLMNYIKQRYNNPPVIITENGMDDSNDIFIPLKKAL 184
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
D R+ Y YL+++A AIK+
Sbjct: 185 KDQKRIKYLTDYLSNLAAAIKE 250
Score = 91.3 bits (193), Expect(2) = 9e-041
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = -2 / +2
Query: 463 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRL 284
N A +DG +V GYF WS LDN+EWA GYT RFG+ +VDYK+ L+R+PK S WF
Sbjct: 227 NLAAAIKEDGCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKCF 406
Query: 283 L 281
L
Sbjct: 407 L 409
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 163 bits (350), Expect(2) = 2e-040
Identities = 64/132 (48%), Positives = 88/132 (66%)
Frame = -2 / -3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E + S+TL + LND
Sbjct: 736 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESQEFSSTLQENLNDV 557
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 556 RRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 377
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 376 KLSAQWFRQFLQ 341
Score = 24.0 bits (46), Expect(2) = 2e-040
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -2 / -3
Query: 787 DFVGVNHYTS 758
D++G+NHYT+
Sbjct: 856 DYMGINHYTT 827
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 136 bits (292), Expect(2) = 3e-040
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = -2 / +3
Query: 535 DDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 356
++ +LD+ LNDT R+ Y +L+ + QAI++GADVRG+FAWS +DNFEW GYT RFG
Sbjct: 192 ENSDPSLDEALNDTWRINYCSEHLHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFG 371
Query: 355 IVYVDYKNGLSRHPKASALWFSRLL 281
+Y+DYK+GL R+PKASA W+ R L
Sbjct: 372 FIYIDYKDGLKRYPKASAHWYKRFL 446
Score = 49.6 bits (102), Expect(2) = 3e-040
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -2 / +3
Query: 649 ASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
AS WL++ GL L YI ++YNNP I++TENG+++
Sbjct: 72 ASFWLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 182
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 165 bits (355), Expect = 5e-040
Identities = 64/118 (54%), Positives = 81/118 (68%)
Frame = -2 / +2
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL +NY +YNNP IYVTE G + DD L+Q LND+ RV Y +L+ + +A
Sbjct: 161 PAGLKDIINYTKHRYNNPTIYVTETGYVDFDDGKTPLEQALNDSRRVMYHSEHLSELLEA 340
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLKGE 272
I +GAD+RGY WS LDNFEW+ GYT RFG+ YVDYK+ L R+P+ASA WF +LK E
Sbjct: 341 ISEGADIRGYLVWSLLDNFEWSFGYTYRFGLYYVDYKDNLKRYPRASANWFRNILKQE 514
>gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 5', mRNA sequence
Length = 738
Score = 164 bits (353), Expect = 9e-040
Identities = 64/132 (48%), Positives = 89/132 (67%)
Frame = -2 / -3
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND
Sbjct: 724 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 545
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 544 RRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 365
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 364 KLSAQWFRQFLQ 329
>gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 3', mRNA sequence
Length = 707
Score = 164 bits (353), Expect = 9e-040
Identities = 64/132 (48%), Positives = 89/132 (67%)
Frame = -2 / +2
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND
Sbjct: 89 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 268
Query: 493 TRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHP 314
R+ + L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+P
Sbjct: 269 RRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 448
Query: 313 KASALWFSRLLK 278
K SA WF + L+
Sbjct: 449 KLSAQWFRQFLQ 484
>gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 3', mRNA sequence
Length = 502
Score = 106 bits (227), Expect(3) = 1e-039
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +3
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 117 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 296
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 297 GVVYVDF 317
Score = 64.8 bits (135), Expect(3) = 1e-039
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -2 / +3
Query: 655 RAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
RA S WL+IVPWGL+K++ Y+ + Y NP + ++ENGMD+
Sbjct: 6 RANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDD 122
Score = 30.9 bits (61), Expect(3) = 1e-039
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +3
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 324 LKRYPKMSAYWFSKLLQ 374
>gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 5', mRNA sequence
Length = 794
Score = 95.5 bits (202), Expect(2) = 2e-039
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = -2 / +1
Query: 463 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRL 284
N A DG V GYFAWS LDN+EWA GYT RFG+ +VDY++ L+RHPKAS WF
Sbjct: 205 NLAAAIKDDGCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCF 384
Query: 283 L 281
L
Sbjct: 385 L 387
Score = 88.1 bits (186), Expect(2) = 2e-039
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = -2 / +1
Query: 664 IGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRV 485
IG++AAS WL+ G+ +NYI ++YNNP + +TENGMD+ ++ L + LND R+
Sbjct: 1 IGDKAASAWLYPFSHGIRSLMNYIKQRYNNPPVIITENGMDDSNNILIPLKKALNDQKRI 180
Query: 484 GYFKGYLNSVAQAIKD 437
Y YL+++A AIKD
Sbjct: 181 KYHAHYLSNLAAAIKD 228
>gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C01_A029 3', mRNA sequence
Length = 737
Score = 162 bits (349), Expect = 3e-039
Identities = 63/129 (48%), Positives = 88/129 (68%)
Frame = -2 / +1
Query: 664 IGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRV 485
IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND R+
Sbjct: 1 IGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDVRRI 180
Query: 484 GYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKAS 305
+ L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+PK S
Sbjct: 181 RFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLS 360
Query: 304 ALWFSRLLK 278
A WF + L+
Sbjct: 361 AQWFRQFLQ 387
>gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 3', mRNA sequence
Length = 837
Score = 161 bits (347), Expect = 6e-039
Identities = 60/91 (65%), Positives = 74/91 (81%)
Frame = -2 / +2
Query: 547 MDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYT 368
MD+ED + LDQ LNDT RV YFKGYL ++A+AI++GADVRGYFAWS +DNFEW GYT
Sbjct: 2 MDDEDSEITLLDQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYT 181
Query: 367 KRFGIVYVDYKNGLSRHPKASALWFSRLLKG 275
KRFG+V+VDYK+ L R+PK+SA WF+ L G
Sbjct: 182 KRFGLVFVDYKDDLKRYPKSSAHWFTSFLHG 274
>gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clone RS35H05, mRNA sequence
Length = 578
Score = 160 bits (345), Expect = 1e-038
Identities = 62/128 (48%), Positives = 88/128 (68%)
Frame = -2 / +2
Query: 661 GERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVG 482
GER A + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + L+D R+
Sbjct: 2 GERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDVRRIR 181
Query: 481 YFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASA 302
+ L+ + AIK+G+DVRGYF WS LDNFEWA GYT RFG+ +VD+ + R+PK SA
Sbjct: 182 FHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSA 361
Query: 301 LWFSRLLK 278
WF + L+
Sbjct: 362 QWFRQFLQ 385
>gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 3', mRNA sequence
Length = 628
Score = 106 bits (227), Expect(3) = 4e-038
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +3
Query: 538 EDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRF 359
+D + TL LNDT RV Y+K YL ++ A+ DGA+V GYFAWS LDNFEW GYT RF
Sbjct: 102 DDPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRF 281
Query: 358 GIVYVDY 338
G+VYVD+
Sbjct: 282 GVVYVDF 302
Score = 59.7 bits (124), Expect(3) = 4e-038
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = -2 / +3
Query: 640 WLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
WL+IVPWGL+K++ Y+ + Y NP + ++ENGMD+
Sbjct: 6 WLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDD 107
Score = 30.9 bits (61), Expect(3) = 4e-038
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2 / +3
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WFS+LL+
Sbjct: 309 LKRYPKMSAYWFSKLLQ 359
>gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 5', mRNA sequence
Length = 873
Score = 134 bits (288), Expect(2) = 9e-038
Identities = 49/95 (51%), Positives = 69/95 (72%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
VD+YR +KA QGG +G+ +D EP S++ ED A QR DFQLGW++DP+ FGDYP
Sbjct: 406 VDIYRTNYKAKQGGRIGVALDVIWYEPMSDSPEDIAATQRAQDFQLGWFMDPLVFGDYPA 585
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SMR+R+G+ LP FS ++ ++ +DFVG+NHYT+
Sbjct: 586 SMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTT 690
Score = 43.2 bits (88), Expect(2) = 9e-038
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -2 / +1
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKK 584
+ +G IG++A+S WL+IVP G+ +NYI ++
Sbjct: 775 FKNGRAIGDKASSAWLYIVPHGIRSLMNYIKRR 873
>gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB853 3' end, mRNA sequence
Length = 526
Score = 81.7 bits (172), Expect(3) = 2e-037
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = -2 / +2
Query: 673 GEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDT 494
G IGER + LF+VP G+ K + Y+ + Y+NP I +TENG E ++ S+TL + LND
Sbjct: 212 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 391
Query: 493 TRVGYFKGYLNSVAQAIKDG 434
R+ + L+ + AIK+G
Sbjct: 392 RRIRFHGDCLSYLNAAIKNG 451
Score = 57.4 bits (119), Expect(3) = 2e-037
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -2 / +1
Query: 877 GDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
GDYP+ MR+RLGS LP+ S + +R D++G+NHYT+
Sbjct: 1 GDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 120
Score = 56.1 bits (116), Expect(3) = 2e-037
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / +3
Query: 451 QAIKDGADVRGYFAWSFLDNFEWAMGYTKR 362
Q K G+DVRGYF WS LD FEWA GYT R
Sbjct: 435 QQSKMGSDVRGYFVWSLLDKFEWAFGYTIR 524
>gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 3', mRNA sequence
Length = 761
Score = 122 bits (260), Expect(2) = 3e-037
Identities = 50/118 (42%), Positives = 72/118 (61%)
Frame = -2 / +2
Query: 631 IVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVA 452
+VP + +L YI + +N I V ENG E ++ S L + LND R+ + L V
Sbjct: 260 VVPQSMQAALEYIEDRSHNIPIIVYENGFSEHNNSSIPLSEALNDQFRMDLHQDVLQYVL 439
Query: 451 QAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
AI++G+DVRGYF W+ LD+FE GYT+ FG+ YVD+ + L R+PK SA W+ L+
Sbjct: 440 AAIRNGSDVRGYFIWTLLDDFEVLDGYTRSFGLHYVDFNDNLKRYPKLSAHWYKTFLQ 613
Score = 57.0 bits (118), Expect(2) = 3e-037
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 889 PIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHY 764
P GDYP SMR +GS LP+F+++ + ++ +DF+GVNHY
Sbjct: 2 PFVSGDYPGSMRNIVGSRLPSFTKEQTQKLQGSLDFIGVNHY 127
>gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 5', mRNA sequence
Length = 648
Score = 124 bits (266), Expect(2) = 1e-036
Identities = 48/104 (46%), Positives = 71/104 (68%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V+VYR K+K Q G +GL + C T P+S + +DQ AAQR +DF LGW++DP+ GDYP
Sbjct: 73 VEVYRSKYKVEQKGCIGLTLVCNWTYPYSSSQDDQNAAQRAVDFMLGWFIDPVTSGDYPF 252
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIAHLQNP 731
+MR RLG L F+E++ E ++ DF+G+N+YTS+ + +P
Sbjct: 253 TMRDRLGDRLLKFTEQESEQLKGSFDFLGMNYYTSQYAINCLDP 384
Score = 49.6 bits (102), Expect(2) = 1e-036
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -2 / +1
Query: 649 ASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
AS WL++ GL L YI ++YNNP I++TENG+++
Sbjct: 466 ASFWLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 576
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 149 bits (320), Expect(2) = 4e-036
Identities = 57/116 (49%), Positives = 78/116 (67%)
Frame = -2 / +2
Query: 625 PWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQA 446
P GL +NY +YNNP IY+TE G + D+ + L++ L+D+ RV Y +L+ + +A
Sbjct: 206 PAGLRDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEA 385
Query: 445 IKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLK 278
I++GADVRGY WS LDNFEWA GY RFG+ Y+DY + L R+ + SA WF LLK
Sbjct: 386 IREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFRNLLK 553
Score = 23.1 bits (44), Expect(2) = 4e-036
Identities = 7/33 (21%), Positives = 18/33 (54%)
Frame = -2 / +2
Query: 823 SEKDKEFMRNKIDFVGVNHYTSRLIAHLQNPND 725
S ++ + ++ DF+G N+Y++ + P +
Sbjct: 2 SSEEAKDLKGSFDFLGFNYYSTDFTINNPTPQN 100
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 601,420,458
Number of Sequences: 355925
Number of extensions: 8539992
Number of successful extensions: 46679
Number of sequences better than 1.0e-020: 122
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 17086188680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)