TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1804898.2.1
         (739 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO370451.1|CO370451  RTK1_68_A10.b1_A029 Roots minus pota...    74   2e-021

>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
           RTK1_68_A10_A029 3', mRNA sequence
          Length = 824

 Score = 74.4 bits (156), Expect(3) = 2e-021
 Identities = 24/40 (60%), Positives = 33/40 (82%)
 Frame = +2 / +3

                                                   
Query: 113 GLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
           G+   GGDMFE +PSADA+ +KWI+HDW ++ CIKI++RC
Sbjct: 84  GVEHMGGDMFETVPSADAIFMKWIMHDWGDEDCIKILKRC 203




 Score = 44.6 bits (91), Expect(3) = 2e-021
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2 / +3

                                                
Query: 377 GAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP 487
           G ER E EW++I L  GF  YKI       S+IE FP
Sbjct: 372 GKERTEEEWKKILLEGGFGRYKIITIPDFQSVIEAFP 482




 Score = 24.4 bits (47), Expect(3) = 2e-021
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2 / +3

                     
Query: 71  DLPHVVAEAP 100
           DLPHVVA AP
Sbjct: 45  DLPHVVATAP 74



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 325,860,185
Number of Sequences: 355925
Number of extensions: 4480995
Number of successful extensions: 43346
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10406105485
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)