TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1724818.2.1
         (1089 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR118536.1|DR118536  RTMG1_17_D04.g1_A029 Roots minus mag...   245   6e-074
dbj|BD267264.1|  Compositions isolated from plant cells and ...   155   5e-037
dbj|BD267344.1|  Compositions isolated from plant cells and ...    68   2e-022

>gb|DR118536.1|DR118536 RTMG1_17_D04.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_17_D04_A029 5', mRNA sequence
          Length = 680

 Score =  245 bits (530), Expect(3) = 6e-074
 Identities = 98/175 (56%), Positives = 128/175 (73%)
 Frame = +3 / +3

                                                                       
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
           DLAL H+N+NRFCG+                SNNRF G FP VV+ LPSL+YLD+RFN+F
Sbjct: 156 DLALFHINTNRFCGIVPHSFKNMTLLYELDISNNRFAGPFPKVVIGLPSLKYLDIRFNEF 335

                                                                       
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
           EG +P  LFD+ LDAI +N+NR    IP+NLGNSP SV+V A+N L GC+PPS+G+MAAT
Sbjct: 336 EGKLPTKLFDKDLDAIFVNNNRFHLEIPSNLGNSPVSVVVFANNNLKGCVPPSLGKMAAT 515

                                                                  
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVA 947
           LNEI+ ++++L+ C+P ++GLL  LTVFD S N L GPLP ++G M  L+QL+VA
Sbjct: 516 LNEIIFLNNNLSACLPSEIGLLKNLTVFDASFNKLVGPLPDSIGQMDSLEQLDVA 680




 Score = 43.2 bits (88), Expect(3) = 6e-074
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1 / +3

                                       
Query: 271 TSNWAGPNVCAYNGIYCAPRPSDGALAV 354
           T NW GPNVC Y G++C+  P + ++ V
Sbjct: 3   TGNWVGPNVCNYTGVFCSAPPYNKSILV 86




 Score = 29.0 bits (57), Expect(3) = 6e-074
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3 / +3

                          
Query: 369 NHADIAGHIPADLPL 413
           NHADIAG++P +L L
Sbjct: 105 NHADIAGYLPTELGL 149



>dbj|BD267264.1| Compositions isolated from plant cells and utilization of the same
           in modifying plant cell signal transduction
          Length = 551

 Score =  155 bits (333), Expect = 5e-037
 Identities = 60/108 (55%), Positives = 83/108 (76%)
 Frame = +3 / +3

                                                                       
Query: 663 NRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVG 842
           NR    IP+NLGNSP SV+V A+N L GC+PPS+G+MAATLNEI+ ++++L+ C+P ++G
Sbjct: 3   NRFHLEIPSNLGNSPVSVVVFANNNLKGCVPPSLGKMAATLNEIIFLNNNLSACLPSEIG 182

                                                           
Query: 843 LLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
           LL  LTVFD S N L GPLP ++G M  L+QL+VA N+L G +P ++C
Sbjct: 183 LLKNLTVFDASFNKLVGPLPDSIGQMDSLEQLDVAHNMLTGKIPQSIC 326



>dbj|BD267344.1| Compositions isolated from plant cells and utilization of the same in
            modifying plant cell signal transduction
          Length = 2691

 Score = 68.4 bits (143), Expect(3) = 2e-022
 Identities = 33/84 (39%), Positives = 45/84 (53%)
 Frame = +3 / +1

                                                                        
Query: 516  SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
            SNN F G+ P  +  L +L  LDL  N F G +P  +    L A+ L +N + G IP N+
Sbjct: 1312 SNNNFTGSLPRNIGQLSNLYLLDLSSNKFTGSLPLSISHLDLQALYLYNNNISGTIPNNI 1491

                                    
Query: 696  GNSPASVLVLAHNRLGGCIPPSIG 767
              S   +L L++N L G IP  IG
Sbjct: 1492 SFSDIQILDLSNNNLEGSIPKLIG 1563




 Score = 58.8 bits (122), Expect(3) = 2e-022
 Identities = 21/59 (35%), Positives = 39/59 (66%)
 Frame = +3 / +1

                                                                       
Query: 798  LIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVP 974
            L +++L G +P  +G L  + + + SGN L+GP+P + G ++ L+QL+++ N L G +P
Sbjct: 1978 LSNNNLVGQIPASIGTLRDMRLLNFSGNQLEGPIPASFGNISTLEQLDLSKNNLNGSIP 2154




 Score = 25.4 bits (49), Expect(3) = 2e-022
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1 / +1

                       
Query: 292 NVCAYNGIYCAP 327
           NVC +NGI C P
Sbjct: 232 NVCLWNGISCRP 267



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 282,420,828
Number of Sequences: 355925
Number of extensions: 3139767
Number of successful extensions: 22303
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16550571480
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)