TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF668719.1|CF668719 RTCNT1_38_F04.b1_A029 Root control P... 116 3e-029
gb|CF390898.1|CF390898 RTDR3_2_B12.g1_A022 Loblolly pine ro... 123 6e-029
gb|CF397459.1|CF397459 RTDS3_3_C06.g1_A022 Drought-stressed... 127 1e-028
gb|CF470501.1|CF470501 RTDS1_17_D08.g1_A015 Drought-stresse... 127 1e-028
gb|CO364236.1|CO364236 RTK1_14_B09.g1_A029 Roots minus pota... 127 1e-028
gb|CF470473.1|CF470473 RTDS1_17_C10.g1_A015 Drought-stresse... 125 3e-028
gb|DR018577.1|DR018577 STRS1_24_C07.b1_A034 Shoot tip pitch... 111 4e-028
gb|CF470929.1|CF470929 RTDS1_15_D01.g1_A015 Drought-stresse... 124 6e-028
gb|DR116517.1|DR116517 RTMG1_1_A03.b1_A029 Roots minus magn... 124 6e-028
gb|CF476517.1|CF476517 RTWW3_1_H01.g1_A022 Well-watered lob... 124 9e-028
gb|CF390867.1|CF390867 RTDR3_2_B12.b1_A022 Loblolly pine ro... 123 1e-027
gb|DR388603.1|DR388603 RTHG1_29_G08.b1_A029 Roots plus adde... 119 5e-027
gb|CO366504.1|CO366504 RTK1_28_F09.b1_A029 Roots minus pota... 118 7e-027
gb|DR095898.1|DR095898 STRR1_24_H10.b1_A033 Stem Response R... 118 5e-026
gb|DR024852.1|DR024852 STRS1_68_A06.b1_A034 Shoot tip pitch... 117 7e-026
gb|CF395665.1|CF395665 RTDS2_16_C04.g1_A021 Drought-stresse... 116 1e-025
gb|CF397197.1|CF397197 RTDS3_2_C09.b2_A022 Drought-stressed... 116 1e-025
gb|CF397284.1|CF397284 RTDS3_2_C09.g1_A022 Drought-stressed... 116 1e-025
gb|CO158429.1|CO158429 FLD1_6_G10.g1_A029 Root flooded Pinu... 116 2e-025
gb|CO159223.1|CO159223 FLD1_12_F05.b1_A029 Root flooded Pin... 116 2e-025
gb|CO159504.1|CO159504 FLD1_14_B06.b1_A029 Root flooded Pin... 116 2e-025
gb|CO160872.1|CO160872 FLD1_25_E02.b1_A029 Root flooded Pin... 116 2e-025
gb|CO161871.1|CO161871 FLD1_31_E09.g1_A029 Root flooded Pin... 116 2e-025
gb|CO163560.1|CO163560 FLD1_42_H09.b1_A029 Root flooded Pin... 116 2e-025
gb|CO164784.1|CO164784 FLD1_50_G01.b1_A029 Root flooded Pin... 116 2e-025
gb|CO165060.1|CO165060 FLD1_52_C08.b1_A029 Root flooded Pin... 116 2e-025
gb|CO165133.1|CO165133 FLD1_52_C08.g1_A029 Root flooded Pin... 116 2e-025
gb|CO369423.1|CO369423 RTK1_47_B12.b1_A029 Roots minus pota... 116 2e-025
gb|DR017118.1|DR017118 STRS1_14_E02.b1_A034 Shoot tip pitch... 116 2e-025
gb|DR020338.1|DR020338 STRS1_36_F03.b1_A034 Shoot tip pitch... 116 2e-025
gb|DR023083.1|DR023083 STRS1_55_H08.b1_A034 Shoot tip pitch... 116 2e-025
gb|DR090237.1|DR090237 RTAL1_13_D08.g1_A029 Roots plus adde... 116 2e-025
gb|DR093096.1|DR093096 STRR1_6_B04.b1_A033 Stem Response Re... 116 2e-025
gb|DR093166.1|DR093166 STRR1_6_B04.g1_A033 Stem Response Re... 116 2e-025
gb|DR096653.1|DR096653 STRR1_29_H01.b1_A033 Stem Response R... 116 2e-025
gb|DR099649.1|DR099649 STRR1_57_D02.b1_A033 Stem Response R... 116 2e-025
gb|DR101174.1|DR101174 STRR1_71_C05.b1_A033 Stem Response R... 116 2e-025
gb|DR101216.1|DR101216 STRR1_71_G05.b1_A033 Stem Response R... 116 2e-025
gb|DR101844.1|DR101844 STRR1_76_F02.b1_A033 Stem Response R... 116 2e-025
gb|DR385544.1|DR385544 RTHG1_9_G06.b1_A029 Roots plus added... 116 2e-025
gb|DR385625.1|DR385625 RTHG1_9_G06.g1_A029 Roots plus added... 116 2e-025
gb|CF402964.1|CF402964 RTWW1_24_E04.b1_A015 Well-watered lo... 116 3e-025
gb|CF403057.1|CF403057 RTWW1_24_E04.g1_A015 Well-watered lo... 116 3e-025
gb|DR023822.1|DR023822 STRS1_60_F11.b1_A034 Shoot tip pitch... 116 3e-025
gb|DR024523.1|DR024523 STRS1_65_C06.g1_A034 Shoot tip pitch... 116 3e-025
gb|DR068520.1|DR068520 RTDK1_1_G05.b1_A029 Roots, dark Pinu... 116 3e-025
gb|DR068609.1|DR068609 RTDK1_1_G05.g1_A029 Roots, dark Pinu... 116 3e-025
gb|CO157922.1|CO157922 FLD1_3_C10.b1_A029 Root flooded Pinu... 114 7e-025
gb|DR021640.1|DR021640 STRS1_46_B08.b1_A034 Shoot tip pitch... 113 1e-024
gb|DR101682.1|DR101682 STRR1_75_C03.b1_A033 Stem Response R... 113 1e-024
gb|DR019184.1|DR019184 STRS1_28_G08.b2_A034 Shoot tip pitch... 113 2e-024
gb|CO164333.1|CO164333 FLD1_47_G07.b1_A029 Root flooded Pin... 112 2e-024
gb|CO363521.1|CO363521 RTK1_10_F05.b1_A029 Roots minus pota... 109 3e-024
gb|DR011191.1|DR011191 HEAT1_4_D07.b1_A029 Root at 37 C for... 111 6e-024
gb|CF389382.1|CF389382 RTDR2_7_B10.b1_A021 Loblolly pine ro... 110 1e-023
gb|DR023481.1|DR023481 STRS1_58_A10.b1_A034 Shoot tip pitch... 110 1e-023
gb|CO159443.1|CO159443 FLD1_13_D05.g1_A029 Root flooded Pin... 110 2e-023
gb|DR168289.1|DR168289 RTPHOS1_24_B04.g1_A029 Roots minus p... 110 2e-023
gb|DR683218.1|DR683218 EST1073294 Normalized pine embryo li... 110 2e-023
gb|CF470906.1|CF470906 RTDS1_15_D01.b1_A015 Drought-stresse... 109 3e-023
gb|CO160954.1|CO160954 FLD1_25_E02.g1_A029 Root flooded Pin... 109 3e-023
gb|DR017196.1|DR017196 STRS1_14_E02.g1_A034 Shoot tip pitch... 109 3e-023
gb|DR069312.1|DR069312 RTDK1_6_H08.b1_A029 Roots, dark Pinu... 105 3e-023
gb|BX255181.1|BX255181 BX255181 Pinus pinaster differenciat... 108 4e-023
gb|CO159794.1|CO159794 FLD1_16_A12.b1_A029 Root flooded Pin... 108 4e-023
gb|DR094529.1|DR094529 STRR1_15_D08.b1_A033 Stem Response R... 108 4e-023
gb|DR094610.1|DR094610 STRR1_15_D08.g1_A033 Stem Response R... 108 4e-023
dbj|BD224494.1| Materials and methods for the modification ... 108 4e-023
gb|DR015813.1|DR015813 STRS1_5_F11.g1_A034 Shoot tip pitch ... 108 6e-023
gb|DR024108.1|DR024108 STRS1_62_A06.g1_A034 Shoot tip pitch... 108 6e-023
gb|DR072788.1|DR072788 RTDK1_28_D01.g1_A029 Roots, dark Pin... 108 6e-023
gb|CO366516.1|CO366516 RTK1_28_G11.b1_A029 Roots minus pota... 103 1e-022
gb|DR180536.1|DR180536 RTMNUT1_33_F10.b1_A029 Roots minus m... 103 1e-022
gb|CO176349.1|CO176349 NDL1_61_A07.g1_A029 Needles control ... 103 1e-022
gb|DR744088.1|DR744088 RTCU1_20_D07.b1_A029 Roots plus adde... 103 1e-022
gb|CO159636.1|CO159636 FLD1_14_G06.g1_A029 Root flooded Pin... 103 1e-022
gb|BX255444.1|BX255444 BX255444 Pinus pinaster differenciat... 103 1e-022
gb|BX250474.1|BX250474 BX250474 Pinus pinaster differenciat... 103 1e-022
gb|BQ699997.1|BQ699997 NXRV132_G06_F NXRV (Nsf Xylem Root w... 103 1e-022
gb|DR099835.1|DR099835 STRR1_59_B12.b1_A033 Stem Response R... 101 2e-022
gb|DR018619.1|DR018619 STRS1_24_A10.g1_A034 Shoot tip pitch... 101 2e-022
gb|BX255284.1|BX255284 BX255284 Pinus pinaster differenciat... 105 3e-022
gb|BE187204.1|BE187204 NXNV_160_E12_F Nsf Xylem Normal wood... 105 4e-022
gb|DR117403.1|DR117403 RTMG1_6_F06.g1_A029 Roots minus magn... 100 5e-022
gb|CF470928.1|CF470928 RTDS1_15_E03.g1_A015 Drought-stresse... 104 7e-022
gb|CO158349.1|CO158349 FLD1_6_G10.b1_A029 Root flooded Pinu... 104 7e-022
gb|CO159361.1|CO159361 FLD1_13_D05.b1_A029 Root flooded Pin... 104 7e-022
gb|DR117368.1|DR117368 RTMG1_6_C05.g1_A029 Roots minus magn... 100 1e-021
gb|DR060675.1|DR060675 RTNIT1_29_G03.b1_A029 Roots minus ni... 104 1e-021
gb|DR743959.1|DR743959 RTCU1_19_G01.b1_A029 Roots plus adde... 104 1e-021
gb|DR744031.1|DR744031 RTCU1_19_G01.g1_A029 Roots plus adde... 104 1e-021
gb|BE187215.1|BE187215 NXNV_160_F11_F Nsf Xylem Normal wood... 103 1e-021
gb|DR117287.1|DR117287 RTMG1_6_C05.b1_A029 Roots minus magn... 100 2e-021
gb|DR023554.1|DR023554 STRS1_58_A10.g1_A034 Shoot tip pitch... 103 2e-021
gb|CX651271.1|CX651271 COLD1_51_F11.b1_A029 Root cold Pinus... 102 4e-021
gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response R... 98 5e-021
gb|BE644117.1|BE644117 NXCI_054_F12_F NXCI (Nsf Xylem Compr... 101 5e-021
gb|DR018562.1|DR018562 STRS1_24_A10.b1_A034 Shoot tip pitch... 101 5e-021
gb|BX253864.1|BX253864 BX253864 Pinus pinaster differenciat... 100 8e-021
>gb|CF668719.1|CF668719 RTCNT1_38_F04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_F04_A029 3', mRNA sequence
Length = 652
Score = 116 bits (248), Expect(2) = 3e-029
Identities = 43/81 (53%), Positives = 56/81 (69%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDGFLD + + VVPW Q RVL+HPS A F+THCGWNS LE+IA G+P++ P W +
Sbjct: 164 LPDGFLDEMGSQCLVVPWCNQLRVLSHPSVAGFITHCGWNSMLESIALGIPMIGLPSWSE 343
Query: 225 QCTDAKFLVDELGMGVRLRGP 287
Q + K + DE +G RL+ P
Sbjct: 344 QYPNCKLMADEWKLGFRLKEP 406
Score = 32.2 bits (64), Expect(2) = 3e-029
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVRPTP 36
G+PFLWV+RPTP
Sbjct: 103 GQPFLWVLRPTP 138
>gb|CF390898.1|CF390898 RTDR3_2_B12.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_B12_A022 5', mRNA
sequence
Length = 776
Score = 123 bits (264), Expect(2) = 6e-029
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +3 / +1
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
LLPDGFLD V +G VVPW Q +VL+H S A F+THCGWNS LE IA GVP++ FP W
Sbjct: 382 LLPDGFLDEVGSQGLVVPWCNQLQVLSHSSVAGFITHCGWNSMLEAIALGVPMLGFPFWA 561
Query: 222 DQCTDAKFLVDELGMGVRLRG 284
DQ T+ KF+ DE +G R+ G
Sbjct: 562 DQFTNCKFMADEWKLGFRVSG 624
Score = 24.0 bits (46), Expect(2) = 6e-029
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 4 RPFLWVVRP 30
+PFLWV+RP
Sbjct: 328 QPFLWVLRP 354
>gb|CF397459.1|CF397459 RTDS3_3_C06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_C06_A022 5', mRNA sequence
Length = 701
Score = 127 bits (271), Expect = 1e-028
Identities = 49/80 (61%), Positives = 60/80 (75%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 549 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 370
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K +VDE +G RL G
Sbjct: 369 QFTNSKLMVDEWKIGYRLSG 310
>gb|CF470501.1|CF470501 RTDS1_17_D08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_17_D08_A015 5', mRNA sequence
Length = 677
Score = 127 bits (271), Expect = 1e-028
Identities = 49/80 (61%), Positives = 60/80 (75%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 318 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 497
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K +VDE +G RL G
Sbjct: 498 QFTNSKLMVDEWKIGYRLSG 557
>gb|CO364236.1|CO364236 RTK1_14_B09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_B09_A029 5', mRNA sequence
Length = 879
Score = 127 bits (271), Expect = 1e-028
Identities = 49/80 (61%), Positives = 60/80 (75%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 487 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 308
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K +VDE +G RL G
Sbjct: 307 QFTNSKLMVDEWKIGYRLSG 248
>gb|CF470473.1|CF470473 RTDS1_17_C10.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_17_C10_A015 5', mRNA sequence
Length = 725
Score = 125 bits (268), Expect = 3e-028
Identities = 48/80 (60%), Positives = 59/80 (73%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 224 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPIVGFPFWAD 403
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 404 QFTNSKLMADEWKIGYRLSG 463
>gb|DR018577.1|DR018577 STRS1_24_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_24_C07_A034 3', mRNA sequence
Length = 823
Score = 111 bits (237), Expect(3) = 4e-028
Identities = 39/79 (49%), Positives = 59/79 (74%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFL+ +G+G VVPW Q +VL+H S F+THCGWNSTLE+++ GVP++ PQW D
Sbjct: 250 LPAGFLNETSGQGLVVPWCHQLQVLSHASVGAFMTHCGWNSTLESLSLGVPMLVIPQWSD 429
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q T++ ++ ++ +G+RL+
Sbjct: 430 QSTNSAYVAEKWMVGMRLK 486
Score = 32.2 bits (64), Expect(3) = 4e-028
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 405 GGSSDAHVQAFVDEVSRRA 461
GGSSD ++Q FVDEV RA
Sbjct: 625 GGSSDRNIQEFVDEVVARA 681
Score = 23.1 bits (44), Expect(3) = 4e-028
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
G FLWVVRP
Sbjct: 184 GYSFLWVVRP 213
>gb|CF470929.1|CF470929 RTDS1_15_D01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_D01_A015 5', mRNA sequence
Length = 782
Score = 124 bits (266), Expect = 6e-028
Identities = 48/78 (61%), Positives = 59/78 (75%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 290 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 469
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T++K +VDE +G RL
Sbjct: 470 QFTNSKLMVDEWKIGYRL 523
>gb|DR116517.1|DR116517 RTMG1_1_A03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_1_A03_A029 3', mRNA sequence
Length = 732
Score = 124 bits (266), Expect = 6e-028
Identities = 47/80 (58%), Positives = 59/80 (73%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GF+D + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 95 LPHGFMDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 274
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 275 QFTNSKLMADEWKIGYRLNG 334
>gb|CF476517.1|CF476517 RTWW3_1_H01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_H01_A022 5', mRNA sequence
Length = 653
Score = 124 bits (265), Expect = 9e-028
Identities = 47/80 (58%), Positives = 59/80 (73%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GF+D + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 635 LPHGFVDDIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWAD 456
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 455 QFTNSKLMADEWKIGYRLNG 396
>gb|CF390867.1|CF390867 RTDR3_2_B12.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_B12_A022 3', mRNA
sequence
Length = 623
Score = 123 bits (264), Expect = 1e-027
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +3 / +3
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
LLPDGFLD V +G VVPW Q +VL+H S A F+THCGWNS LE IA GVP++ FP W
Sbjct: 33 LLPDGFLDEVGSQGLVVPWCNQLQVLSHSSVAGFITHCGWNSMLEAIALGVPMLGFPFWA 212
Query: 222 DQCTDAKFLVDELGMGVRLRG 284
DQ T+ KF+ DE +G R+ G
Sbjct: 213 DQFTNCKFMADEWKLGFRVSG 275
>gb|DR388603.1|DR388603 RTHG1_29_G08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_G08_A029 3', mRNA sequence
Length = 712
Score = 119 bits (254), Expect(2) = 5e-027
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GFL ++G+G VVPW PQ +VL+H S F+THCGWNSTLE++ GVP++A PQW D
Sbjct: 401 LPEGFLAEISGQGLVVPWCPQLQVLSHASVGAFMTHCGWNSTLESLTMGVPLLAVPQWSD 222
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+++++ +E G+RL
Sbjct: 221 QTTNSRYIGEEWKTGLRL 168
Score = 22.1 bits (42), Expect(2) = 5e-027
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 1 GRPFLWVVRPT 33
G F+WV+RP+
Sbjct: 467 GYSFIWVIRPS 435
>gb|CO366504.1|CO366504 RTK1_28_F09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_F09_A029 3', mRNA sequence
Length = 842
Score = 118 bits (252), Expect(2) = 7e-027
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GFL ++G+G VVPW PQ +VL+H S F+THCGWNSTLE++ GVP++A PQW D
Sbjct: 97 LPEGFLAEISGQGLVVPWCPQLQVLSHASVGAFMTHCGWNSTLESLTMGVPLLAVPQWTD 276
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+++++ +E G+RL
Sbjct: 277 QTTNSRYIGEEWKTGLRL 330
Score = 22.6 bits (43), Expect(2) = 7e-027
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 1 GRPFLWVVRPT 33
G F+WVVRP+
Sbjct: 31 GYSFIWVVRPS 63
>gb|DR095898.1|DR095898 STRR1_24_H10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_24_H10_A033 3', mRNA sequence
Length = 687
Score = 118 bits (252), Expect = 5e-026
Identities = 46/80 (57%), Positives = 56/80 (70%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA+GVP+V FP W D
Sbjct: 35 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIASGVPLVGFPFWND 214
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 215 QFTNCKLMADEWKLGFRLSG 274
>gb|DR024852.1|DR024852 STRS1_68_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_A06_A034 3', mRNA sequence
Length = 793
Score = 117 bits (251), Expect = 7e-026
Identities = 47/80 (58%), Positives = 58/80 (72%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD + G+G VVPW Q +VL+HPS A F+THCG NS LE+IA GVP+V FP W D
Sbjct: 123 LPHGFLDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCG*NSMLESIAGGVPMVGFPFWAD 302
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 303 QFTNSKLMADEWKIGYRLSG 362
>gb|CF395665.1|CF395665 RTDS2_16_C04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_C04_A021 5', mRNA sequence
Length = 702
Score = 116 bits (249), Expect = 1e-025
Identities = 45/75 (60%), Positives = 56/75 (74%)
Frame = +3 / -1
Query: 60 LDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 239
LD + G+G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP+V FP W DQ T++
Sbjct: 702 LDEIKGQGLVVPWCNQLQVLSHPSVAGFVTHCGWNSMLESIAGGVPMVGFPLWADQFTNS 523
Query: 240 KFLVDELGMGVRLRG 284
K +VDE +G RL G
Sbjct: 522 KLMVDEWKIGYRLSG 478
>gb|CF397197.1|CF397197 RTDS3_2_C09.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C09_A022 3', mRNA sequence
Length = 683
Score = 116 bits (249), Expect = 1e-025
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPD FLD + +G VVPW Q +VL+HPS A F+THCGWNS LE+I+ GVP++ FP W D
Sbjct: 19 LPDAFLDEIERQGLVVPWCNQLQVLSHPSVAGFITHCGWNSMLESISRGVPMIGFPFWAD 198
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G L G
Sbjct: 199 QFTNCKLMADEWKIGYSLNG 258
>gb|CF397284.1|CF397284 RTDS3_2_C09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C09_A022 5', mRNA sequence
Length = 736
Score = 116 bits (249), Expect = 1e-025
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPD FLD + +G VVPW Q +VL+HPS A F+THCGWNS LE+I+ GVP++ FP W D
Sbjct: 321 LPDAFLDEIERQGLVVPWCNQLQVLSHPSVAGFITHCGWNSMLESISRGVPMIGFPFWAD 500
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G L G
Sbjct: 501 QFTNCKLMADEWKIGYSLNG 560
>gb|CO158429.1|CO158429 FLD1_6_G10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_G10_A029 5', mRNA sequence
Length = 696
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 347 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 526
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 527 QFTNCKLMADEWKIGFRLSG 586
>gb|CO159223.1|CO159223 FLD1_12_F05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_F05_A029 3', mRNA sequence
Length = 803
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 163 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 342
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 343 QFTNCKLMADEWKIGFRLSG 402
>gb|CO159504.1|CO159504 FLD1_14_B06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_14_B06_A029 3', mRNA sequence
Length = 752
Score = 116 bits (248), Expect = 2e-025
Identities = 41/78 (52%), Positives = 58/78 (74%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFL ++G+G VVPW PQ +VL+H S F+THCGWNSTLE++ GVP++ PQW D
Sbjct: 49 LPKGFLTEISGQGLVVPWCPQLQVLSHASVGAFMTHCGWNSTLESLTLGVPLLVVPQWSD 228
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+++++ +E G+RL
Sbjct: 229 QTTNSRYIGEEWKTGLRL 282
>gb|CO160872.1|CO160872 FLD1_25_E02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_25_E02_A029 3', mRNA sequence
Length = 822
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 316 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 495
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 496 QFTNCKLMADEWKIGFRLSG 555
>gb|CO161871.1|CO161871 FLD1_31_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_E09_A029 5', mRNA sequence
Length = 816
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 565 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 744
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 745 QFTNCKLMADEWKIGFRLSG 804
>gb|CO163560.1|CO163560 FLD1_42_H09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_H09_A029 3', mRNA sequence
Length = 653
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 3 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 182
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 183 QFTNCKLMADEWKIGFRLSG 242
>gb|CO164784.1|CO164784 FLD1_50_G01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_G01_A029 3', mRNA sequence
Length = 831
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 163 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 342
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 343 QFTNCKLMADEWKIGFRLSG 402
>gb|CO165060.1|CO165060 FLD1_52_C08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_C08_A029 3', mRNA sequence
Length = 898
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 354 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 533
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 534 QFTNCKLMADEWKIGFRLSG 593
>gb|CO165133.1|CO165133 FLD1_52_C08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_C08_A029 5', mRNA sequence
Length = 899
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 383 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 562
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 563 QFTNCKLMADEWKIGFRLSG 622
>gb|CO369423.1|CO369423 RTK1_47_B12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_47_B12_A029 3', mRNA sequence
Length = 854
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 349 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 528
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 529 QFTNCKLMADEWKIGFRLSG 588
>gb|DR017118.1|DR017118 STRS1_14_E02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E02_A034 3', mRNA sequence
Length = 776
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 228 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 407
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 408 QFTNCKLMADEWKIGFRLSG 467
>gb|DR020338.1|DR020338 STRS1_36_F03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_F03_A034 3', mRNA sequence
Length = 844
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 204 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 383
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 384 QFTNCKLMADEWKIGFRLSG 443
>gb|DR023083.1|DR023083 STRS1_55_H08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_H08_A034 3', mRNA sequence
Length = 724
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 71 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 250
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 251 QFTNCKLMADEWKIGFRLSG 310
>gb|DR090237.1|DR090237 RTAL1_13_D08.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_D08_A029 5', mRNA sequence
Length = 703
Score = 116 bits (248), Expect = 2e-025
Identities = 41/78 (52%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFL ++G+G VVPW PQ +VL+H S F+THCGWNSTLE++ GVP++ PQW D
Sbjct: 678 LPKGFLTEISGQGLVVPWCPQLQVLSHASVGAFMTHCGWNSTLESLTLGVPLLVVPQWSD 499
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+++++ +E G+RL
Sbjct: 498 QTTNSRYIGEEWKTGLRL 445
>gb|DR093096.1|DR093096 STRR1_6_B04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B04_A033 3', mRNA sequence
Length = 657
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 3 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 182
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 183 QFTNCKLMADEWKIGFRLSG 242
>gb|DR093166.1|DR093166 STRR1_6_B04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B04_A033 5', mRNA sequence
Length = 865
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 488 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 667
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 668 QFTNCKLMADEWKIGFRLSG 727
>gb|DR096653.1|DR096653 STRR1_29_H01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_H01_A033 3', mRNA sequence
Length = 664
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 19 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 198
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 199 QFTNCKLMADEWKIGFRLSG 258
>gb|DR099649.1|DR099649 STRR1_57_D02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_D02_A033 3', mRNA sequence
Length = 750
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 167 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 346
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 347 QFTNCKLMADEWKIGFRLSG 406
>gb|DR101174.1|DR101174 STRR1_71_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_71_C05_A033 3', mRNA sequence
Length = 876
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 223 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 402
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 403 QFTNCKLMADEWKIGFRLSG 462
>gb|DR101216.1|DR101216 STRR1_71_G05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_71_G05_A033 3', mRNA sequence
Length = 681
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 35 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 214
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 215 QFTNCKLMADEWKIGFRLSG 274
>gb|DR101844.1|DR101844 STRR1_76_F02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_F02_A033 3', mRNA sequence
Length = 772
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 223 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 402
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 403 QFTNCKLMADEWKIGFRLSG 462
>gb|DR385544.1|DR385544 RTHG1_9_G06.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_9_G06_A029 3', mRNA sequence
Length = 823
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 169 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 348
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 349 QFTNCKLMADEWKIGFRLSG 408
>gb|DR385625.1|DR385625 RTHG1_9_G06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_9_G06_A029 5', mRNA sequence
Length = 810
Score = 116 bits (248), Expect = 2e-025
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 148 LPHGFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 327
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 328 QFTNCKLMADEWKIGFRLSG 387
>gb|CF402964.1|CF402964 RTWW1_24_E04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_E04_A015 3', mRNA sequence
Length = 680
Score = 116 bits (247), Expect = 3e-025
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = +3 / +2
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LPDGFL+ RG VVPW Q VL+HPS F +HCGWNSTLE+I+ G+P++ FP G
Sbjct: 116 MLPDGFLNETKQRGVVVPWCSQLNVLSHPSIGGFFSHCGWNSTLESISFGLPILGFPLGG 295
Query: 222 DQCTDAKFLVDELGMGVRLR 281
+Q + KF+VDE +G+RLR
Sbjct: 296 EQFVNCKFIVDEWKIGMRLR 355
>gb|CF403057.1|CF403057 RTWW1_24_E04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_E04_A015 5', mRNA sequence
Length = 672
Score = 116 bits (247), Expect = 3e-025
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = +3 / +3
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LPDGFL+ RG VVPW Q VL+HPS F +HCGWNSTLE+I+ G+P++ FP G
Sbjct: 357 MLPDGFLNETKQRGVVVPWCSQLNVLSHPSIGGFFSHCGWNSTLESISFGLPILGFPLGG 536
Query: 222 DQCTDAKFLVDELGMGVRLR 281
+Q + KF+VDE +G+RLR
Sbjct: 537 EQFVNCKFIVDEWKIGMRLR 596
>gb|DR023822.1|DR023822 STRS1_60_F11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_F11_A034 3', mRNA sequence
Length = 844
Score = 116 bits (247), Expect = 3e-025
Identities = 45/80 (56%), Positives = 57/80 (71%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
L DGFL+ +G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP++ FP W D
Sbjct: 329 LLDGFLNETEKQGLVVPWCNQVQVLSHPSVAGFITHCGWNSMLESIALGVPMIGFPFWAD 150
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 149 QFTNSKLMADEWKIGFRLSG 90
>gb|DR024523.1|DR024523 STRS1_65_C06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_65_C06_A034 5', mRNA sequence
Length = 535
Score = 116 bits (247), Expect = 3e-025
Identities = 45/80 (56%), Positives = 57/80 (71%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
L DGFL+ +G VVPW Q +VL+HPS A F+THCGWNS LE+IA GVP++ FP W D
Sbjct: 131 LLDGFLNETEKQGLVVPWCNQVQVLSHPSVAGFITHCGWNSMLESIALGVPMIGFPFWAD 310
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T++K + DE +G RL G
Sbjct: 311 QFTNSKLMADEWKIGFRLSG 370
>gb|DR068520.1|DR068520 RTDK1_1_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_G05_A029 3', mRNA sequence
Length = 643
Score = 116 bits (247), Expect = 3e-025
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = +3 / -3
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LPDGFL+ RG VVPW Q VL+HPS F +HCGWNSTLE+I+ G+P++ FP G
Sbjct: 248 MLPDGFLNETKQRGVVVPWCSQLNVLSHPSIGGFFSHCGWNSTLESISFGLPILGFPLGG 69
Query: 222 DQCTDAKFLVDELGMGVRLR 281
+Q + KF+VDE +G+RLR
Sbjct: 68 EQFVNCKFIVDEWKIGMRLR 9
>gb|DR068609.1|DR068609 RTDK1_1_G05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_G05_A029 5', mRNA sequence
Length = 728
Score = 116 bits (247), Expect = 3e-025
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = +3 / -2
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LPDGFL+ RG VVPW Q VL+HPS F +HCGWNSTLE+I+ G+P++ FP G
Sbjct: 523 MLPDGFLNETKQRGVVVPWCSQLNVLSHPSIGGFFSHCGWNSTLESISFGLPILGFPLGG 344
Query: 222 DQCTDAKFLVDELGMGVRLR 281
+Q + KF+VDE +G+RLR
Sbjct: 343 EQFVNCKFIVDEWKIGMRLR 284
>gb|CO157922.1|CO157922 FLD1_3_C10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_3_C10_A029 3', mRNA sequence
Length = 596
Score = 114 bits (244), Expect = 7e-025
Identities = 45/80 (56%), Positives = 54/80 (67%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP GFLD +G V PW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 38 LPHGFLDENKSQGLVAPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 217
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 218 QFTNCKLMADEWKIGFRLSG 277
>gb|DR021640.1|DR021640 STRS1_46_B08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_46_B08_A034 3', mRNA sequence
Length = 702
Score = 113 bits (242), Expect = 1e-024
Identities = 45/80 (56%), Positives = 54/80 (67%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP FLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 33 LPHAFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 212
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 213 QFTNCKLMADEWKIGFRLSG 272
>gb|DR101682.1|DR101682 STRR1_75_C03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_75_C03_A033 3', mRNA sequence
Length = 805
Score = 113 bits (242), Expect = 1e-024
Identities = 45/80 (56%), Positives = 54/80 (67%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP FLD +G VVPW Q +VL+HPS F+THCGWNS LE+IA GVP+V FP W D
Sbjct: 302 LPHAFLDENKSQGLVVPWCNQLQVLSHPSVGGFITHCGWNSMLESIAFGVPLVGFPFWND 481
Query: 225 QCTDAKFLVDELGMGVRLRG 284
Q T+ K + DE +G RL G
Sbjct: 482 QFTNCKLMADEWKIGFRLSG 541
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 396,142,677
Number of Sequences: 355925
Number of extensions: 6287506
Number of successful extensions: 70003
Number of sequences better than 1.0e-020: 107
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11592293675
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)