TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF392539.1|CF392539 RTDR3_6_D05.g1_A022 Loblolly pine ro... 283 6e-088
gb|DR071777.1|DR071777 RTDK1_22_B10.b1_A029 Roots, dark Pin... 175 3e-084
gb|DR168140.1|DR168140 RTPHOS1_23_A10.g1_A029 Roots minus p... 211 2e-083
gb|DR110707.1|DR110707 RTS1_12_A12.g1_A029 Roots minus sulf... 288 4e-077
gb|DT635321.1|DT635321 EST1150252 Normalized pine embryo li... 156 2e-075
gb|DR689085.1|DR689085 EST1079171 Normalized pine embryo li... 135 2e-074
gb|DR686917.1|DR686917 EST1076995 Normalized pine embryo li... 122 2e-068
gb|DR162467.1|DR162467 RTFE1_18_A11.b1_A029 Roots minus iro... 163 8e-067
gb|DR071858.1|DR071858 RTDK1_22_B10.g1_A029 Roots, dark Pin... 243 2e-063
gb|BF777412.1|BF777412 NXSI_071_C09_F NXSI (Nsf Xylem Side ... 100 7e-058
gb|BQ697497.1|BQ697497 NXPV_054_B05_F NXPV (Nsf Xylem Plani... 198 3e-056
gb|CX646905.1|CX646905 COLD1_12_F08.b1_A029 Root cold Pinus... 212 4e-054
gb|DR387538.1|DR387538 RTHG1_22_B10.g2_A029 Roots plus adde... 86 7e-029
gb|CX646988.1|CX646988 COLD1_12_F08.g1_A029 Root cold Pinus... 127 1e-028
gb|AW010130.1|AW010130 ST02C11 Pine TriplEx shoot tip libra... 102 6e-028
gb|DR110628.1|DR110628 RTS1_12_A12.b1_A029 Roots minus sulf... 115 5e-025
>gb|CF392539.1|CF392539 RTDR3_6_D05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_6_D05_A022 5', mRNA
sequence
Length = 661
Score = 283 bits (613), Expect(2) = 6e-088
Identities = 99/183 (54%), Positives = 135/183 (73%)
Frame = -2 / +2
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTSYNLTESLMFLAHFVGDVHQPL 591
C + Y RDCH+ G +G+C+ GAI NYT QL YG YNLT++L+FL+HF+GD+H+PL
Sbjct: 113 CGYSYERDCHDEHGVKGVCLEGAIKNYTSQLEGYGSSGKYNLTQALLFLSHFMGDIHEPL 292
Query: 590 HVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGW 411
HVGF DEGGNTI +HWY+RK+NLHHVWD II+ A+K+FY+ ++ M+EA++ N++ W
Sbjct: 293 HVGFTSDEGGNTIQLHWYKRKSNLHHVWDSYIIEKAMKEFYDNDLEVMIEAIQKNISGSW 472
Query: 410 SDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLA 231
SD++ WE CK C +YA ESI +C +AYKD E+D L DDYF SR PI+E++LA
Sbjct: 473 SDEVPTWEKCKGHEVVCPGEYADESIVIACKWAYKDAEEDSVLEDDYFLSRLPILERQLA 652
Query: 230 QAG 222
+ G
Sbjct: 653 KGG 661
Score = 123 bits (263), Expect(2) = 2e-029
Identities = 76/176 (43%), Positives = 91/176 (51%)
Frame = +1 / -2
Query: 223 PACANLFSTIGYLLKK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVACLFLQFSQWTM 402
P A+ S +G +K*SS + +S S SL*A LQ +LS A S Q L FS
Sbjct: 660 PPFASCLSRMGKRERK*SSSKTLSSSASL*AHLQAITILSSAYSPGQTTSCPLHFSHVGT 481
Query: 403 SSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTVMVLPPSSSSK 582
SSD F AS + S L * S +A S+M SHT* + FL YQ +V PPSS
Sbjct: 480 SSDQLPEIFF*IASIITSRSLS*NSFMAFSMM*LSHT*CKLLFLLYQCNCIVFPPSSEVN 301
Query: 583 PTCSGWWTSPTKCARNIRLSVRLYEVFWP*L*SWSV*LLIAPTTHIPCWPRELWQS 750
PTC G W SP K RN + V+LY P* S V* +AP+ H P P WQS
Sbjct: 300 PTCKGSWISPMK*ERNSKACVKLYFPLLP*PSS*EV*FFMAPSRHTPFTPCSSWQS 133
Score = 62.0 bits (129), Expect(2) = 6e-088
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = -2 / +2
Query: 878 PESAGGELSTVCPWADQVRWHYHWASPLHYANTP 777
P+ A G+L+++C W DQ+R+ +HWASPLH+ NTP
Sbjct: 2 PKYADGDLASLCSWPDQMRFRFHWASPLHFINTP 103
Score = 26.3 bits (51), Expect(2) = 2e-029
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1 / -2
Query: 778 GVLA*WSGLAQW*CQRTWSAHGH 846
GVL +GLAQW R S H H
Sbjct: 102 GVLMKCNGLAQWNLNRI*SGHEH 34
>gb|DR071777.1|DR071777 RTDK1_22_B10.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B10_A029 3', mRNA sequence
Length = 817
Score = 175 bits (376), Expect(3) = 3e-084
Identities = 60/107 (56%), Positives = 81/107 (75%)
Frame = -2 / -3
Query: 653 YNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKD 474
YNLTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY RK+NLHH+WD II+TA+KD
Sbjct: 332 YNLTEALLFLSHFMGDIHQPLHVGFSTDEGGNTIMLHWYGRKSNLHHIWDSLIIETAMKD 153
Query: 473 FYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESI 333
FY+ ++ M++ ++ N+TD WS ++ WE C C YA ES+
Sbjct: 152 FYDNDLEVMIQEVQRNITDSWSGEVPTWEKCNGHDLACPKLYADESV 12
Score = 106 bits (227), Expect(3) = 3e-084
Identities = 38/64 (59%), Positives = 51/64 (79%)
Frame = -2 / -3
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
AWGKEGH CKIAE LS++A+ AV+ LLPE A G+L+++C W D++R+ YHWASPLH+
Sbjct: 659 AWGKEGHYSTCKIAEPLLSKEASKAVKQLLPEHAEGDLASLCSWPDEMRFRYHWASPLHF 480
Query: 788 ANTP 777
+TP
Sbjct: 479 IDTP 468
Score = 87.2 bits (184), Expect(4) = 1e-024
Identities = 46/106 (43%), Positives = 59/106 (55%)
Frame = +1 / +1
Query: 337 LSIA*SFAQVACLFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT* 516
LS A + Q L FS S D SV F+ + + S L *KS +AVS++ SH *
Sbjct: 16 LSSAYNLGQARSCPLHFSHVGTSPDQLSVIFL*TSCIITSRSLS*KSFMAVSMIRLSHI* 195
Query: 517 WRFAFLRYQWTVMVLPPSSSSKPTCSGWWTSPTKCARNIRLSVRLY 654
+ FL YQ +++V PPSS PTC G W SP K RN + SV+LY
Sbjct: 196 CKLLFLPYQCSIIVFPPSSVENPTCKG*WISPIK*ERNSKASVKLY 333
Score = 70.3 bits (147), Expect(3) = 3e-084
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = -2 / -3
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
C++ YSRDCHN+ G++GMC+ GAINNYT QL +YG++ +
Sbjct: 458 CSYAYSRDCHNTLGEKGMCLEGAINNYTSQLETYGRRAT 342
Score = 36.8 bits (74), Expect(4) = 1e-024
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 667 P*L*SWSV*LLIAPTTHIPCWPRELWQSRE 756
P*+ S V*L +AP+ H+P PR LWQS E
Sbjct: 355 P*VSS*EV*LFMAPSRHMPFSPRVLWQSLE 444
Score = 22.6 bits (43), Expect(4) = 1e-024
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1 / +1
Query: 778 GVLA*WSGLAQW*CQRTWSAH 840
GV SGLAQW R S H
Sbjct: 469 GVSMKCSGLAQWYLNRISSGH 531
Score = 22.1 bits (42), Expect(4) = 1e-024
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1 / +1
Query: 892 TAAAAFSDRYFSAILQTMMWPSFPHA 969
TA A R SAILQ PSFP A
Sbjct: 583 TAFDASLLRSGSAILQVE*CPSFPQA 660
>gb|DR168140.1|DR168140 RTPHOS1_23_A10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_A10_A029 5', mRNA sequence
Length = 688
Score = 211 bits (455), Expect(3) = 2e-083
Identities = 74/134 (55%), Positives = 99/134 (73%)
Frame = -2 / +3
Query: 653 YNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKD 474
YNLTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY RK+NLHH+WD II+TA+KD
Sbjct: 285 YNLTEALLFLSHFMGDIHQPLHVGFSTDEGGNTIMLHWYGRKSNLHHIWDSLIIETAMKD 464
Query: 473 FYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQ 294
FY+ ++ M++ ++ N+TD WS ++ WE C C YA ES+ +C +AYKD E+
Sbjct: 465 FYDNDLEVMIQEVQRNITDSWSGEVPTWEKCNGHDLACPKLYADESVILACKWAYKDAEE 644
Query: 293 DITLGDDYFFSRYP 252
+ L DDYF SR P
Sbjct: 645 NTVLEDDYFLSRLP 686
Score = 100 bits (212), Expect(3) = 3e-026
Identities = 57/130 (43%), Positives = 73/130 (56%)
Frame = +1 / -1
Query: 265 KK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVACLFLQFSQWTMSSDHPSVRFILRAS 444
+K*SS + + S SL*A LQ LS A + Q L FS S D SV F+ +
Sbjct: 673 RK*SSSKTVFSSASL*AHLQARITLSSAYNLGQARSCPLHFSHVGTSPDQLSVIFL*TSC 494
Query: 445 TMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTVMVLPPSSSSKPTCSGWWTSPTKCA 624
+ S L *KS +AVS++ SH * + FL YQ +++V PPSS PTC G W SP K
Sbjct: 493 IITSRSLS*KSFMAVSMIRLSHI*CKLLFLPYQCSIIVFPPSSVENPTCKG*WISPIK*E 314
Query: 625 RNIRLSVRLY 654
RN + SV+LY
Sbjct: 313 RNSKASVKLY 284
Score = 72.5 bits (152), Expect(3) = 2e-083
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = -2 / +3
Query: 914 SEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYANTP 777
+++A+ AV+ LLPE A G+L+++C W D++R+ YHWASPLH+ +TP
Sbjct: 12 NKEASKAVKQLLPEHAEGDLASLCSWPDEMRFRYHWASPLHFIDTP 149
Score = 65.7 bits (137), Expect(3) = 2e-083
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2 / +3
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
C++ YSRDCHN+ G++GMC+ GAINNYT QL + G + +
Sbjct: 159 CSYAYSRDCHNTLGEKGMCLEGAINNYTSQLETCGSRAT 275
Score = 34.5 bits (69), Expect(3) = 3e-026
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1 / -1
Query: 688 V*LLIAPTTHIPCWPRELWQSRE 756
V*L +AP+ H+P PR LWQS E
Sbjct: 241 V*LFMAPSRHMPFSPRVLWQSLE 173
Score = 22.6 bits (43), Expect(3) = 3e-026
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1 / -1
Query: 778 GVLA*WSGLAQW*CQRTWSAH 840
GV SGLAQW R S H
Sbjct: 148 GVSMKCSGLAQWYLNRISSGH 86
>gb|DR110707.1|DR110707 RTS1_12_A12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_A12_A029 5', mRNA sequence
Length = 836
Score = 288 bits (624), Expect = 4e-077
Identities = 102/190 (53%), Positives = 140/190 (73%)
Frame = -2 / +2
Query: 758 YSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTSYNLTESLMFLAHFVGDVHQPLHVGF 579
Y RDCH+ G + +C+ GA+ NYT QL YG YNLT++L+FL+HF+GD+H+PLHVGF
Sbjct: 2 YERDCHDEHGVKDVCLEGALKNYTSQLEGYGSSGKYNLTQALLFLSHFMGDIHEPLHVGF 181
Query: 578 EDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDI 399
DEGGNTI +HWY+RK+NLHHVWD II+ A+K++Y+ ++ M+EA++ N++ WSD++
Sbjct: 182 TSDEGGNTIQLHWYKRKSNLHHVWDSYIIEKAMKEYYDNDLEVMIEAIQKNISGSWSDEV 361
Query: 398 VHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQAGI 219
WE C C +YA ESI +C +AYKD E+D L DDYF SR PI+E++LA+ G+
Sbjct: 362 PTWEKCNGHEVVCPGEYADESIVIACKWAYKDAEEDSVLEDDYFLSRLPILERQLAKGGV 541
Query: 218 RLALVLNRIF 189
RLA LNRIF
Sbjct: 542 RLAATLNRIF 571
Score = 126 bits (269), Expect = 3e-028
Identities = 80/181 (44%), Positives = 95/181 (52%)
Frame = +1 / -3
Query: 190 NIRLSTNANLIPACANLFSTIGYLLKK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVA 369
NIRLS ANL P A+ S +G +K*SS + +S S SL*A LQ +LS A S Q
Sbjct: 570 NIRLSVAANLTPPFASCLSRMGKRERK*SSSKTLSSSASL*AHLQAITILSSAYSPGQTT 391
Query: 370 CLFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWT 549
L FS SSD F AS + S L * S +A S+M SHT* + FL YQ +
Sbjct: 390 SCPLHFSHVGTSSDQLPEIFF*IASIITSRSLS*YSFMAFSMM*LSHT*CKLLFLLYQCS 211
Query: 550 VMVLPPSSSSKPTCSGWWTSPTKCARNIRLSVRLYEVFWP*L*SWSV*LLIAPTTHIPCW 729
+V PPSS PTC G W SP K RN + V+LY P* S V* AP+ H
Sbjct: 210 CIVFPPSSEVNPTCKGSWISPMK*ERNSKACVKLYFPLLP*PSS*EV*FFKAPSRHTSFT 31
Query: 730 P 732
P
Sbjct: 30 P 28
>gb|DT635321.1|DT635321 EST1150252 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF57 3' end, mRNA sequence
Length = 796
Score = 156 bits (335), Expect(3) = 2e-075
Identities = 52/89 (58%), Positives = 75/89 (84%)
Frame = -2 / +3
Query: 656 SYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIK 477
+YNLTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY +++NLHHVWD II+TA+K
Sbjct: 528 NYNLTEALLFLSHFMGDIHQPLHVGFTTDEGGNTIKLHWYGQQSNLHHVWDSLIIETAMK 707
Query: 476 DFYNKSMDTMVEALKMNLTDGWSDDIVHW 390
D+Y+ ++ M+ A++ N+T WSD++ +W
Sbjct: 708 DYYDNDLEEMIAAIQKNVTGNWSDEVPNW 794
Score = 101 bits (215), Expect(3) = 2e-075
Identities = 36/64 (56%), Positives = 50/64 (78%)
Frame = -2 / +3
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
+WG EGH CKIA+ L+E+A+AAV LLP+ A G+L+++C WADQVR+ Y W+SPLH+
Sbjct: 204 SWGIEGHYATCKIAQPLLTEEASAAVNGLLPDYAKGDLASLCSWADQVRFRYRWSSPLHF 383
Query: 788 ANTP 777
+TP
Sbjct: 384 IDTP 395
Score = 64.8 bits (135), Expect(3) = 2e-075
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +3
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
C + YSRDCHN+ G++GMCV GAI NYT +L +YG + +
Sbjct: 405 CTYIYSRDCHNAEGKEGMCVDGAIKNYTSELGNYGGRAT 521
>gb|DR689085.1|DR689085 EST1079171 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACE03 3' end, mRNA sequence
Length = 863
Score = 135 bits (290), Expect(5) = 2e-074
Identities = 47/78 (60%), Positives = 66/78 (84%)
Frame = -2 / +1
Query: 656 SYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIK 477
+YNLTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY +++NLHHVWD II+TA+K
Sbjct: 520 NYNLTEALLFLSHFMGDIHQPLHVGFTTDEGGNTIKLHWYGQQSNLHHVWDSLIIETAMK 699
Query: 476 DFYNKSMDTMVEALKMNL 423
D+Y+ ++ M+ A++ L
Sbjct: 700 DYYDNDLEEMIAAIQKML 753
Score = 101 bits (215), Expect(5) = 2e-074
Identities = 36/64 (56%), Positives = 50/64 (78%)
Frame = -2 / +1
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
+WG EGH CKIA+ L+E+A+AAV LLP+ A G+L+++C WADQVR+ Y W+SPLH+
Sbjct: 196 SWGIEGHYATCKIAQPLLTEEASAAVNGLLPDYAKGDLASLCSWADQVRFRYRWSSPLHF 375
Query: 788 ANTP 777
+TP
Sbjct: 376 IDTP 387
Score = 64.8 bits (135), Expect(5) = 2e-074
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2 / +1
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
C + YSRDCHN+ G++GMCV GAI NYT +L +YG + +
Sbjct: 397 CTYIYSRDCHNAEGKEGMCVDGAIKNYTSELGNYGGRAT 513
Score = 27.2 bits (53), Expect(5) = 2e-074
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +2
Query: 386 NCKNKHATCANDYAIESIHYSCNYA 312
+C C YA ESI +CN+A
Sbjct: 788 DCSTDILACPKPYADESISLACNWA 862
Score = 26.7 bits (52), Expect(5) = 2e-074
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 428 NLTDGWSDDIVHWE 387
N+T WSD++ +WE
Sbjct: 747 NVTGNWSDEVPNWE 788
>gb|DR686917.1|DR686917 EST1076995 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABL29 3' end, mRNA sequence
Length = 701
Score = 122 bits (262), Expect(3) = 2e-068
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = -2 / +1
Query: 653 YNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIK 477
YNLTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY RK+NLHH+WD II+TA+K
Sbjct: 523 YNLTEALLFLSHFMGDIHQPLHVGFSTDEGGNTIMLHWYGRKSNLHHIWDSLIIETAMK 699
Score = 106 bits (227), Expect(3) = 2e-068
Identities = 38/64 (59%), Positives = 51/64 (79%)
Frame = -2 / +1
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
AWGKEGH CKIAE LS++A+ AV+ LLPE A G+L+++C W D++R+ YHWASPLH+
Sbjct: 196 AWGKEGHYSTCKIAEPLLSKEASKAVKQLLPEHAEGDLASLCSWPDEMRFRYHWASPLHF 375
Query: 788 ANTP 777
+TP
Sbjct: 376 IDTP 387
Score = 69.8 bits (146), Expect(3) = 2e-068
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -2 / +1
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
C++ YSRDCHN+ G++GMC+ GAINNYT QL +YG + +
Sbjct: 397 CSYAYSRDCHNTLGEKGMCLEGAINNYTSQLETYGSRAT 513
>gb|DR162467.1|DR162467 RTFE1_18_A11.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_18_A11_A029 3', mRNA sequence
Length = 695
Score = 163 bits (350), Expect(2) = 8e-067
Identities = 54/89 (60%), Positives = 70/89 (78%)
Frame = -2 / -1
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTSYNLTESLMFLAHFVGDVHQPL 591
C + Y RDCH+ G + +C+ GA+ NYT QL YG YNLT++L+FL+HF+GD+H+PL
Sbjct: 278 CGYSYERDCHDEHGVKNVCLEGALKNYTSQLEGYGSSGKYNLTQALLFLSHFMGDIHEPL 99
Query: 590 HVGFEDDEGGNTITVHWYRRKANLHHVWD 504
HVGF DEGGNTI +HWY+RK+NLHHVWD
Sbjct: 98 HVGFTSDEGGNTIQLHWYKRKSNLHHVWD 12
Score = 111 bits (238), Expect(2) = 8e-067
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = -2 / -1
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
AWGKEGH CKIAE LSE+A AAV+ LLP+ A G+L+++C W DQ+R+ +HWASPLHY
Sbjct: 479 AWGKEGHYSTCKIAEPLLSEEARAAVKKLLPKYADGDLASLCSWPDQMRFRFHWASPLHY 300
Query: 788 ANTP 777
NTP
Sbjct: 299 INTP 288
>gb|DR071858.1|DR071858 RTDK1_22_B10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B10_A029 5', mRNA sequence
Length = 688
Score = 243 bits (525), Expect = 2e-063
Identities = 89/157 (56%), Positives = 117/157 (74%)
Frame = -2 / -3
Query: 647 LTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFY 468
LTE+L+FL+HF+GD+HQPLHVGF DEGGNTI +HWY RK+NLHH+WD II+TA+KDFY
Sbjct: 686 LTEALLFLSHFMGDIHQPLHVGFSTDEGGNTIMLHWYGRKSNLHHIWDSLIIETAMKDFY 507
Query: 467 NKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDI 288
+ ++ M++ ++ N+TD WS ++ WE C C YA ES+ +C +AYKD E++
Sbjct: 506 DNDLEVMIQEVQRNITDSWSGEVPTWEKCNGHDLACPKLYADESVILACKWAYKDAEENT 327
Query: 287 TLGDDYFFSRYPIVEKRLAQAGIRLALVLNRIFGGGE 177
L DDYFFSR PIVEK+LA+ G+RLA LNRIF E
Sbjct: 326 VLEDDYFFSRLPIVEKQLAKGGVRLAATLNRIFNSKE 216
Score = 119 bits (255), Expect = 3e-026
Identities = 69/152 (45%), Positives = 86/152 (56%)
Frame = +1 / +1
Query: 193 IRLSTNANLIPACANLFSTIGYLLKK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVAC 372
IRLS ANL P A+ FST+G KK*SS + + S SL*A LQ LS A + Q
Sbjct: 232 IRLSVAANLTPPFASCFSTMGKREKK*SSSKTVFSSASL*AHLQARITLSSAYNLGQARS 411
Query: 373 LFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTV 552
L FS S D SV F+ + + S L *KS +AVS++ SH * + FL YQ ++
Sbjct: 412 CPLHFSHVGTSPDQLSVIFL*TSCIITSRSLS*KSFMAVSMIRLSHI*CKLLFLPYQCSI 591
Query: 553 MVLPPSSSSKPTCSGWWTSPTKCARNIRLSVR 648
+V PPSS PTC G W SP K RN + SV+
Sbjct: 592 IVFPPSSVENPTCKG*WISPIK*ERNSKASVK 687
>gb|BF777412.1|BF777412 NXSI_071_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_071_C09 5' similar to Arabidopsis thaliana
sequence At1g11190 bifunctional nuclease bfn1 like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 481
Score = 100 bits (214), Expect(3) = 7e-058
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 674 SYGQKTSYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWD 504
S + +YNLTE+L+FL+HF+GDVHQPLHVGF DEGGNTI +HWY++ HH+ D
Sbjct: 301 SRDDRENYNLTEALLFLSHFIGDVHQPLHVGFTTDEGGNTIILHWYKQXXXXHHIXD 471
Score = 97.3 bits (206), Expect(3) = 7e-058
Identities = 35/61 (57%), Positives = 49/61 (80%)
Frame = -2 / +1
Query: 962 GKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYAN 783
G EGH +CKIAE+ LSE+A+ AV+ LLPE A G+L+++C WAD +R+HY W+SPLH+ +
Sbjct: 1 GSEGHYSICKIAEQLLSEEASMAVKKLLPEYAKGDLASLCSWADHMRFHYPWSSPLHFID 180
Query: 782 T 780
T
Sbjct: 181 T 183
Score = 65.7 bits (137), Expect(3) = 7e-058
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = -2 / +1
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQK 660
C++ YSRDCHN++G+ GMC+ GAI NYT QL +YG +
Sbjct: 196 CSYVYSRDCHNAQGEIGMCLEGAIKNYTSQLETYGSR 306
>gb|BQ697497.1|BQ697497 NXPV_054_B05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_054_B05 5' similar to Arabidopsis
thaliana sequence At1g11190 bifunctional nuclease bfn1
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 198 bits (426), Expect(2) = 3e-056
Identities = 66/130 (50%), Positives = 92/130 (70%)
Frame = -2 / +3
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTSYNLTESLMFLAHFVGDVHQPL 591
C + Y RDCH+ G + +C+ GA+ NYT QL YG YNLT++L+FL+HF+GD+H+PL
Sbjct: 66 CGYSYERDCHDEHGVKDVCLEGALKNYTSQLEGYGSSGKYNLTQALLFLSHFMGDIHEPL 245
Query: 590 HVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGW 411
HVGF DE GNTI +HWY+RK+NLHHVWD II+ A+K++Y+ + M+ N++ W
Sbjct: 246 HVGFTSDEXGNTIQLHWYKRKSNLHHVWDSYIIEKAMKEYYDNDLXXMIXXXXKNISGSW 425
Query: 410 SDDIVHWENC 381
SD+ WE C
Sbjct: 426 SDEXPTWEKC 455
Score = 41.8 bits (85), Expect(2) = 3e-056
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -2 / +3
Query: 830 QVRWHYHWASPLHYANTP 777
Q+R+ +HWASPLHY NTP
Sbjct: 3 QMRFRFHWASPLHYINTP 56
>gb|CX646905.1|CX646905 COLD1_12_F08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_F08_A029 3', mRNA sequence
Length = 748
Score = 212 bits (457), Expect = 4e-054
Identities = 78/142 (54%), Positives = 101/142 (71%)
Frame = -2 / +1
Query: 602 HQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNL 423
HQPLHVGF DEGGNTI +HWY RK+NLHH+WD II+TA+KDFY+ ++ M++ ++ N+
Sbjct: 7 HQPLHVGFSTDEGGNTIMLHWYGRKSNLHHIWDSLIIETAMKDFYDNDLEVMIQEVQRNI 186
Query: 422 TDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVE 243
TD WS ++ WE C C YA ES+ +C +AYKD E++ L DDYF SR PIVE
Sbjct: 187 TDSWSGEVPTWEKCNGHDLACPKLYADESVILACKWAYKDAEENTVLEDDYFLSRLPIVE 366
Query: 242 KRLAQAGIRLALVLNRIFGGGE 177
K+LA+ G+RLA LNRIF E
Sbjct: 367 KQLAKGGVRLAATLNRIFNSKE 432
Score = 101 bits (216), Expect = 7e-021
Identities = 60/135 (44%), Positives = 76/135 (56%)
Frame = +1 / -3
Query: 193 IRLSTNANLIPACANLFSTIGYLLKK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVAC 372
IRLS ANL P A+ FST+G +K*SS + + S SL*A LQ LS A + Q
Sbjct: 416 IRLSVAANLTPPFASCFSTMGKRERK*SSSKTVFSSASL*AHLQARITLSSAYNLGQARS 237
Query: 373 LFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTV 552
L FS S D SV F+ + + S L *KS +AVS++ SH * + FL YQ ++
Sbjct: 236 CPLHFSHVGTSPDQLSVIFL*TSCIITSRSLS*KSFMAVSMIRLSHI*CKLLFLPYQCSI 57
Query: 553 MVLPPSSSSKPTCSG 597
+V PPSS PTC G
Sbjct: 56 IVFPPSSVENPTCKG 12
>gb|DR387538.1|DR387538 RTHG1_22_B10.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_B10_A029 5', mRNA sequence
Length = 592
Score = 85.8 bits (181), Expect(5) = 7e-029
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = -2 / +3
Query: 635 LMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKS 459
L+F+ HFVGDVHQPLHVG+ DDEGGNT+ + + ++ NLH VWD II D+ + S
Sbjct: 378 LVFITHFVGDVHQPLHVGYGDDEGGNTVKIDFLGKRGNLHQVWDEFIIQKYDSDWQDFS 554
Score = 33.1 bits (66), Expect(5) = 7e-029
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2 / +3
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALL 879
AWGKEGH +V IA L+ A AV L
Sbjct: 42 AWGKEGHQIVADIAYNRLNSNAQQAVNYYL 131
Score = 28.6 bits (56), Expect(5) = 7e-029
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2 / +3
Query: 809 WASPLHYANTPQVCNFKYSRDC 744
W+ PLHY N P+ S DC
Sbjct: 198 WSGPLHYVNLPRNAVQYTSADC 263
Score = 26.7 bits (52), Expect(5) = 7e-029
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2 / +3
Query: 716 CVVGAINNYTDQLYSYGQKTS 654
CVV AI NYT QL G S
Sbjct: 279 CVVSAIQNYTKQLAYEGTSGS 341
Score = 25.8 bits (50), Expect(5) = 7e-029
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3 / +1
Query: 406 TTSSTGKIARTNTRPARTTMR 344
+T+ TG+I+R ++RP T R
Sbjct: 526 STTRTGRISRASSRPTSRTTR 588
>gb|CX646988.1|CX646988 COLD1_12_F08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_F08_A029 5', mRNA sequence
Length = 320
Score = 127 bits (273), Expect = 1e-028
Identities = 47/106 (44%), Positives = 69/106 (65%)
Frame = -2 / +3
Query: 515 HVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIES 336
H+WD II+TA+KDFY+ ++ M++ ++ N+TD WS ++ WE C C A ES
Sbjct: 3 HIWDSLIIETALKDFYDNDLEVMIQEVQRNITDSWSGEVPTWEKCNGHDLACPKLDADES 182
Query: 335 IHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQAGIRLALVLN 198
+ +C +AYKD +++ L DDYF SR P EK+LA+ G+RLA LN
Sbjct: 183 VILACEWAYKDADENPVLEDDYFLSRLPSGEKQLAKGGLRLAATLN 320
>gb|AW010130.1|AW010130 ST02C11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST02C11, mRNA sequence
Length = 476
Score = 102 bits (218), Expect(2) = 6e-028
Identities = 37/64 (57%), Positives = 49/64 (76%)
Frame = -2 / +3
Query: 968 AWGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHY 789
AWGKEGH C IAE LS++A+ AV+ LLPE A G+L+++C W D +R+ YHWASPLH+
Sbjct: 207 AWGKEGHYSTCXIAEPLLSKEASKAVKQLLPEHAEGDLASLCSWPDXMRFRYHWASPLHF 386
Query: 788 ANTP 777
+TP
Sbjct: 387 IDTP 398
Score = 42.3 bits (86), Expect(2) = 6e-028
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = -2 / +3
Query: 770 CNFKYSRDCHNSRGQQGMCV 711
C++ YSRDCHN+ G++GMC+
Sbjct: 408 CSYAYSRDCHNTLGEKGMCL 467
>gb|DR110628.1|DR110628 RTS1_12_A12.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_A12_A029 3', mRNA sequence
Length = 669
Score = 115 bits (246), Expect = 5e-025
Identities = 42/86 (48%), Positives = 58/86 (67%)
Frame = -2 / +2
Query: 446 VEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYF 267
+EA++ N++ WSD++ WE C C +YA ESI +C +AYKD E+D L DDYF
Sbjct: 2 IEAIQKNISGSWSDEVPTWEKCNGHEVVCPGEYADESIVIACKWAYKDAEEDSVLEDDYF 181
Query: 266 FSRYPIVEKRLAQAGIRLALVLNRIF 189
SR PI+E++LA+ G+RLA NRIF
Sbjct: 182 LSRLPILERQLAKGGVRLAATFNRIF 259
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 488,098,618
Number of Sequences: 355925
Number of extensions: 6957692
Number of successful extensions: 82840
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16282762880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)