TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716207.2.2
(754 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo lib... 143 5e-038
gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clon... 149 3e-035
gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciat... 149 3e-035
gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root w... 146 3e-035
gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stresse... 147 7e-035
gb|CO158567.1|CO158567 FLD1_7_F03.g1_A029 Root flooded Pinu... 147 7e-035
gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control ... 147 7e-035
gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control ... 147 7e-035
gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control ... 147 7e-035
gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo lib... 147 7e-035
gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo lib... 147 7e-035
gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pin... 147 7e-035
gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pin... 147 7e-035
gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone lib... 146 1e-034
gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Plani... 146 1e-034
gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root w... 146 1e-034
gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root w... 146 1e-034
gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root w... 146 1e-034
gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root w... 146 1e-034
gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clon... 146 1e-034
gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clon... 146 1e-034
gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo lib... 146 1e-034
gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo lib... 146 1e-034
gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo lib... 146 1e-034
gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo lib... 146 1e-034
gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo lib... 146 1e-034
gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo lib... 146 1e-034
gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus mag... 146 1e-034
gb|AL750292.1|AL750292 AL750292 AS Pinus pinaster cDNA clon... 144 5e-034
gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo lib... 144 5e-034
gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo li... 144 5e-034
gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side ... 144 7e-034
gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo lib... 144 7e-034
gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side ... 144 9e-034
gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo lib... 143 1e-033
gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo li... 143 1e-033
gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo li... 142 2e-033
gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo lib... 142 3e-033
gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo li... 142 3e-033
gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side ... 138 4e-032
gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Ve... 134 7e-031
gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Ver... 134 7e-031
gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root ... 130 9e-030
gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side ... 125 3e-028
gb|CF398801.1|CF398801 RTDS3_16_F11.g1_A022 Drought-stresse... 120 1e-026
gb|AW754567.1|AW754567 PC03G03 Pine TriplEx pollen cone lib... 79 2e-023
gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side ... 108 5e-023
gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clon... 107 7e-023
>gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA74, mRNA sequence
Length = 443
Score = 143 bits (307), Expect(2) = 5e-038
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDK L EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 299 VNNMVLFDQATYDKPLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
Score = 34.5 bits (69), Expect(2) = 5e-038
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEE 145
DGP++G+G A + RWW+A+EE
Sbjct: 405 DGPQKGKGGALF*ASEVFRWWKAEEE 328
>gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clone RS44H08, mRNA sequence
Length = 535
Score = 149 bits (319), Expect = 3e-035
Identities = 65/73 (89%), Positives = 68/73 (93%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLLSE PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 117 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 296
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 297 SSQQIYTRATNT* 335
Score = 118 bits (252), Expect = 5e-026
Identities = 53/110 (48%), Positives = 74/110 (67%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEG+G +++A QV WQ +EEE+EQ KAKGEG+Q G+V G L A+L AQ+QA
Sbjct: 8 NGTEEGKGSPTILQACQVWRWQTEEEEMEQRKAKGEGEQYGSV*SGNL**ASL*SAQIQA 187
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 188 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 337
Score = 91.3 bits (193), Expect(2) = 2e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG SE SL
Sbjct: 334 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASERSL 155
Query: 214 S*VAWSNST 188
S*VA SN T
Sbjct: 154 S*VA*SNRT 128
Score = 51.0 bits (105), Expect(2) = 2e-027
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPSRL 61
PSP AF CS SSS CH +TW A P PSS P +L
Sbjct: 117 PSPFAFLCSISSSSVCHRQTWQAWRMVGEPFPSSVPFKL 1
>gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129A02 similar to 40S ribosomal protein S25,
mRNA sequence
Length = 643
Score = 149 bits (319), Expect = 3e-035
Identities = 65/73 (89%), Positives = 68/73 (93%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLLSE PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 472 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 293
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 292 SSQQIYTRATNT* 254
Score = 118 bits (252), Expect = 5e-026
Identities = 53/110 (48%), Positives = 74/110 (67%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEG+G +++A QV WQ +EEE+EQ KAKGEG+Q G+V G L A+L AQ+QA
Sbjct: 581 NGTEEGKGSPTILQACQVWRWQTEEEEMEQRKAKGEGEQYGSV*SGNL**ASL*SAQIQA 402
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 401 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 252
Score = 91.3 bits (193), Expect(2) = 8e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / +3
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG SE SL
Sbjct: 255 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASERSL 434
Query: 214 S*VAWSNST 188
S*VA SN T
Sbjct: 435 S*VA*SNRT 461
Score = 49.2 bits (101), Expect(2) = 8e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
PSP AF CS SSS CH +TW A P PSS P
Sbjct: 472 PSPFAFLCSISSSSVCHRQTWQAWRMVGEPFPSSVP 579
>gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV114_G10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 146 bits (314), Expect(2) = 3e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 181 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 360
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 361 SSQQIYTRATNT* 399
Score = 22.1 bits (42), Expect(2) = 3e-035
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRW 127
DGP++G+G A + RW
Sbjct: 71 DGPQKGKGGALF*ASEVFRW 130
>gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV051_E09 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 782
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 218 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 397
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 398 SSQQIYTRATNT* 436
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 109 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 288
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 289 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 438
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -3
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 435 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 256
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 255 S*VA*SNST 229
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 218 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 111
>gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_F11_A022 3', mRNA sequence
Length = 527
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 72 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 251
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 252 SSQQIYTRATNT* 290
Score = 90.4 bits (191), Expect(2) = 2e-023
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 289 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 110
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 109 S*VA*SNST 83
Score = 38.6 bits (78), Expect(2) = 2e-023
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPA 109
P P AF CS SSS CH +TW A
Sbjct: 72 PFPFAFLCSISSSSVCHRQTWQA 4
>gb|CO158567.1|CO158567 FLD1_7_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_F03_A029 5', mRNA sequence
Length = 597
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 64 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 243
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 244 SSQQIYTRATNT* 282
Score = 90.4 bits (191), Expect(2) = 7e-022
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 281 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 102
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 101 S*VA*SNST 75
Score = 33.6 bits (67), Expect(2) = 7e-022
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTW 115
P P AF S SSS CH +TW
Sbjct: 64 PFPFAFKSSISSSSVCHRQTW 2
>gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_E06_A029 3', mRNA sequence
Length = 595
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 55 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 234
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 235 SSQQIYTRATNT* 273
>gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_37_C07_A029 3', mRNA sequence
Length = 663
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 202 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 381
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 382 SSQQIYTRATNT* 420
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 93 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 272
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 273 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 422
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 419 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 240
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 239 S*VA*SNST 213
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 202 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 95
>gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_D06_A029 3', mRNA sequence
Length = 611
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 157 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 336
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 337 SSQQIYTRATNT* 375
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 48 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 227
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 228 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 377
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 374 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 195
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 194 S*VA*SNST 168
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 157 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 50
>gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA247, mRNA sequence
Length = 672
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 236 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 415
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 416 SSQQIYTRATNT* 454
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 127 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 306
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 307 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 456
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 453 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 274
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 273 S*VA*SNST 247
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 236 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 129
>gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAK25, mRNA sequence
Length = 690
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 257 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 436
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 437 SSQQIYTRATNT* 475
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 148 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 327
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 328 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 477
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / -1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 474 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 295
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 294 S*VA*SNST 268
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 257 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 150
>gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 3', mRNA sequence
Length = 841
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 522 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 343
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 342 SSQQIYTRATNT* 304
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / -1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 631 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 452
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 451 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 302
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / +2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 305 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 484
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 485 S*VA*SNST 511
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / +3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 522 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 629
>gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 5', mRNA sequence
Length = 764
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 626 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 447
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 446 SSQQIYTRATNT* 408
Score = 116 bits (247), Expect = 2e-025
Identities = 53/110 (48%), Positives = 73/110 (66%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 735 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 556
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK ADLHQ N +++
Sbjct: 555 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 406
Score = 90.4 bits (191), Expect(2) = 3e-027
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 409 HVLVALV*IC*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 588
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 589 S*VA*SNST 615
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / +2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 626 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 733
>gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11H08, mRNA sequence
Length = 526
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 176 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 355
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 356 SSQQIYTRATNT* 394
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 67 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 246
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 247 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 393
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -2
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 390 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 211
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 210 *VAWSKRT 187
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 176 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 66
>gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_H06 5' similar to Arabidopsis
thaliana sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 158 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 337
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 338 SSQQIYTRATNT* 376
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 49 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 228
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 229 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 375
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 372 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 193
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 192 *VAWSKRT 169
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 158 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 48
>gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_F11 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 180 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 359
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 360 SSQQIYTRATNT* 398
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 71 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 250
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 251 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 397
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 394 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 215
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 214 *VAWSKRT 191
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 180 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 70
>gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 180 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 359
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 360 SSQQIYTRATNT* 398
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 71 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 250
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 251 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 397
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 394 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 215
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 214 *VAWSKRT 191
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 180 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 70
>gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV068_A07 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 563
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 145 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 324
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 325 SSQQIYTRATNT* 363
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 36 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 215
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 216 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 362
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 359 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 180
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 179 *VAWSKRT 156
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 145 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 35
>gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV131_B10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 178 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 357
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 358 SSQQIYTRATNT* 396
Score = 93.6 bits (198), Expect(2) = 3e-022
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 392 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 213
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 212 *VAWSKRT 189
Score = 31.8 bits (63), Expect(2) = 3e-022
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHH 124
PSP AF CS SSS A HH
Sbjct: 178 PSPSAFLCSISSSSAFHH 125
>gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clone RS09D07, mRNA sequence
Length = 544
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 32 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 211
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 212 SSQQIYTRATNT* 250
>gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clone RS43E12, mRNA sequence
Length = 623
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 223 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 402
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 403 SSQQIYTRATNT* 441
Score = 103 bits (220), Expect = 1e-021
Identities = 48/109 (44%), Positives = 70/109 (64%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+GP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 114 NGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 293
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ A+LH +Q++
Sbjct: 294 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSANLH*SDQHL 440
Score = 95.9 bits (203), Expect(2) = 2e-024
Identities = 47/68 (69%), Positives = 53/68 (77%)
Frame = -1 / -1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV*IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 437 VLVALV*IC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 258
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 257 *VAWSKRT 234
Score = 36.3 bits (73), Expect(2) = 2e-024
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
PSP AF CS SSS A HH + A P P GP
Sbjct: 223 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGP 116
>gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA417, mRNA sequence
Length = 446
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 299 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 408 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 229
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 228 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 82
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 85 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 264
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 265 *VAWSKRT 288
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 299 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 409
>gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA602, mRNA sequence
Length = 457
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 148 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 327
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 328 SSQQIYTRATNT* 366
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 39 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 218
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 219 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 365
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / -3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 362 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 183
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 182 *VAWSKRT 159
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 148 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 38
>gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA763, mRNA sequence
Length = 458
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 419 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 240
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 239 YYTLNFIR*VED*WLTCSKGYQGFDGKRFDQDDFCSLQSTNIH*SDQHL 93
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 276 *VAWSKRT 299
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ69, mRNA sequence
Length = 457
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 419 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 240
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 239 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 93
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 276 *VAWSKRT 299
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ92, mRNA sequence
Length = 458
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 419 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 240
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 239 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 93
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 276 *VAWSKRT 299
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB645, mRNA sequence
Length = 446
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 299 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 408 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 229
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 228 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 82
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 85 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 264
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 265 *VAWSKRT 288
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 299 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 409
>gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_G09_A029 5', mRNA sequence
Length = 666
Score = 146 bits (314), Expect = 1e-034
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 145 VNNMVLFDQATYDKLLVEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 324
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 325 SSQQIYTRATNT* 363
Score = 92.7 bits (196), Expect(2) = 4e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / -2
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS SLS
Sbjct: 359 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSTRSLS 180
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 179 *VAWSKRT 156
Score = 32.2 bits (64), Expect(2) = 4e-022
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
PSP AF CS SSS A H + A P P GP
Sbjct: 145 PSPSAFLCSISSSSAFHDLKTSLA*KRAPPFPFWGP 38
>gb|AL750292.1|AL750292 AL750292 AS Pinus pinaster cDNA clone AS07H03 similar to RP S25,
mRNA sequence
Length = 595
Score = 144 bits (310), Expect = 5e-034
Identities = 63/72 (87%), Positives = 67/72 (93%)
Frame = +3 / +3
Query: 180 NNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVHS 359
NN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S HS
Sbjct: 3 NNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAHS 182
Query: 360 SQQIYTRATNT* 395
SQQIYTRATNT*
Sbjct: 183 SQQIYTRATNT* 218
>gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB53, mRNA sequence
Length = 457
Score = 144 bits (310), Expect = 5e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN LFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 310 VNNMALFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 419 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 240
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 239 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 93
Score = 91.8 bits (194), Expect(2) = 1e-023
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWS 197
*VAWS
Sbjct: 276 *VAWS 290
Score = 38.2 bits (77), Expect(2) = 1e-023
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME934, mRNA sequence
Length = 475
Score = 144 bits (310), Expect = 5e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / -2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN LFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 330 VNNMALFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 151
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 150 SSQQIYTRATNT* 112
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 439 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 260
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 259 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 113
Score = 91.8 bits (194), Expect(2) = 1e-023
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / +2
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 116 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 295
Query: 211 *VAWS 197
*VAWS
Sbjct: 296 *VAWS 310
Score = 38.2 bits (77), Expect(2) = 1e-023
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 330 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 440
>gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_H01 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 144 bits (309), Expect = 7e-034
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR IKDLMARG IRM+S H
Sbjct: 204 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARXXIKDLMARGSIRMISAH 383
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 384 SSQQIYTRATNT* 422
Score = 108 bits (230), Expect = 5e-023
Identities = 51/110 (46%), Positives = 69/110 (62%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ EE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 95 NGTEEGQGSPPILQACQVWRWQTXXEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 274
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +QG DG + D LK ADLHQ N +++
Sbjct: 275 HHPFHFVRQAKD*WFTCQXXYQGSDGTRFNQDDFCSLKSADLHQSN*HMK 424
Score = 88.1 bits (186), Expect(2) = 4e-026
Identities = 45/69 (65%), Positives = 52/69 (75%)
Frame = -1 / -2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC LE E I + PRAI+SL+ A EPLIL S++MEGV+ LYLG S SL
Sbjct: 421 HVLVALV*IC*LE*AEIILIEPRAIRSLIXXLASEPLILSLSDKMEGVMSLYLGASVRSL 242
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 241 S*VA*SNST 215
Score = 50.1 bits (103), Expect(2) = 4e-026
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SS CH +TW A PCPSS P
Sbjct: 204 PFPFAFLCSISSXXVCHRQTWQAWRMGGEPCPSSVP 97
>gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACP25, mRNA sequence
Length = 457
Score = 144 bits (309), Expect = 7e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SQQIYTRATNT*
Sbjct: 130 PSQQIYTRATNT* 92
Score = 90.4 bits (191), Expect(2) = 3e-023
Identities = 45/68 (66%), Positives = 51/68 (75%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC L E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LG*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 276 *VAWSKRT 299
Score = 38.2 bits (77), Expect(2) = 3e-023
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_H05 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 144 bits (308), Expect = 9e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 130 VNNMVLFDQATYDKLLVEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 309
Query: 357 SSQQIYTRATNT* 395
SSQ IYTRATNT*
Sbjct: 310 SSQXIYTRATNT* 348
Score = 85.4 bits (180), Expect(2) = 3e-021
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = -1 / -1
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS SLS
Sbjct: 344 VLVALVYXX*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSTRSLS 165
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 164 *VAWSKRT 141
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
PSP AF CS SSS A HH + A P P GP
Sbjct: 130 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGP 23
>gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACY14, mRNA sequence
Length = 445
Score = 143 bits (307), Expect = 1e-033
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDK L EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 148 VNNMVLFDQATYDKPLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 327
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 328 SSQQIYTRATNT* 366
Score = 101 bits (215), Expect = 6e-021
Identities = 46/109 (42%), Positives = 68/109 (62%)
Frame = +2 / +3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 39 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 218
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED CS+G+QG DG D L+ ++H +Q++
Sbjct: 219 YYTLNFIR*VED*WFTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 365
Score = 91.8 bits (194), Expect(2) = 1e-023
Identities = 45/68 (66%), Positives = 51/68 (75%)
Frame = -1 / -3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ LS
Sbjct: 362 VLVALVYIC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRGLS 183
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 182 *VAWSKRT 159
Score = 38.2 bits (77), Expect(2) = 1e-023
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 148 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 38
>gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19 3' end, mRNA sequence
Length = 713
Score = 143 bits (307), Expect = 1e-033
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 231 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 410
Query: 357 SSQQIYTRATNT* 395
SSQ IYTRATNT*
Sbjct: 411 SSQ*IYTRATNT* 449
Score = 114 bits (243), Expect = 9e-025
Identities = 52/110 (47%), Positives = 72/110 (65%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 122 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 301
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C +G+QG DG + D LK DLHQ N +++
Sbjct: 302 HHPFHFVRQAKD*WFTCQKGYQGSDGTRFNQDDFCSLKSVDLHQSN*HMK 451
Score = 85.4 bits (180), Expect(2) = 1e-025
Identities = 45/69 (65%), Positives = 52/69 (75%)
Frame = -1 / -2
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*I LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 448 HVLVALV*IY*LE*AEIILIEPRAIRSLIAFLASEPLILSLSDKMEGVMSLYLGASVRSL 269
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 268 S*VA*SNST 242
Score = 51.5 bits (106), Expect(2) = 1e-025
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 231 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 124
>gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19, mRNA sequence
Length = 563
Score = 142 bits (305), Expect = 2e-033
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +3 / -2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+R+RINGSLAR+AIKDLMARG IRM+S H
Sbjct: 445 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRIRINGSLARKAIKDLMARGSIRMISAH 266
Query: 357 SSQQIYTRATNT* 395
SSQ IYTRATNT*
Sbjct: 265 SSQ*IYTRATNT* 227
Score = 113 bits (242), Expect = 1e-024
Identities = 52/110 (47%), Positives = 71/110 (64%)
Frame = +2 / -1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 554 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 375
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R +D C +G+QG DG + D LK DLHQ N +++
Sbjct: 374 HHPFHFVRQDKD*WFTCQKGYQGSDGTRFNQDDFCSLKSVDLHQSN*HMK 225
Score = 84.5 bits (178), Expect(2) = 2e-025
Identities = 45/69 (65%), Positives = 52/69 (75%)
Frame = -1 / +3
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*I LE E I + PRAI+SL+A A EPLIL S++MEGV+ LYLG S SL
Sbjct: 228 HVLVALV*IY*LE*AEIILIEPRAIRSLIAFLASEPLILILSDKMEGVMSLYLGASVRSL 407
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 408 S*VA*SNST 434
Score = 51.5 bits (106), Expect(2) = 2e-025
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 445 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 552
>gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB488, mRNA sequence
Length = 457
Score = 142 bits (304), Expect = 3e-033
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
V+N VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+A KDLMA+G IRM+S H
Sbjct: 310 VSNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKATKDLMAKGSIRMISAH 131
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 419 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 240
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 239 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 93
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +3
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 96 VLVALVYIC*LE*AEIILIEPFAIKSLVAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 275
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 276 *VAWSKRT 299
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 310 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 420
>gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME170, mRNA sequence
Length = 477
Score = 142 bits (304), Expect = 3e-033
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +3 / -1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
V+N VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+A KDLMA+G IRM+S H
Sbjct: 330 VSNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKATKDLMAKGSIRMISAH 151
Query: 357 SSQQIYTRATNT* 395
SSQQIYTRATNT*
Sbjct: 150 SSQQIYTRATNT* 112
Score = 103 bits (219), Expect = 2e-021
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2 / -3
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
DGP++G+G A + RWW+A+EEE+EQ KA+GEG+Q G+ P LR A+L AQVQA
Sbjct: 439 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGEGEQHGSF*PSNLR*ASLRSAQVQA 260
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYI 394
+ + +R ED L CS+G+QG DG D L+ ++H +Q++
Sbjct: 259 YYTLNFIR*VED*WLTCSKGYQGFDGERFDQDDFCSLQSTNIH*SDQHL 113
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -1 / +2
Query: 391 VLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS 212
VLVALV IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS
Sbjct: 116 VLVALVYIC*LE*AEIILIEPFAIKSLVAFRASEPLILNLSDKIEGVISLYLGTSKRSLS 295
Query: 211 *VAWSNST 188
*VAWS T
Sbjct: 296 *VAWSKRT 319
Score = 38.2 bits (77), Expect(2) = 3e-024
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 330 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 440
>gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_D10 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 138 bits (296), Expect = 4e-032
Identities = 61/73 (83%), Positives = 65/73 (89%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G IRM+S H
Sbjct: 222 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 401
Query: 357 SSQQIYTRATNT* 395
SSQQIYT A T*
Sbjct: 402 SSQQIYTXAXXT* 440
Score = 84.5 bits (178), Expect(2) = 2e-021
Identities = 40/61 (65%), Positives = 46/61 (75%)
Frame = -1 / -2
Query: 370 ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSLS*VAWSNS 191
IC LE E I + P AIKSL+A RA EPLIL S+++EGVI LYLGTS+ SLS*VAWS
Sbjct: 415 IC*LE*AEIILIEPFAIKSLIAFRASEPLILNLSDKIEGVISLYLGTSKRSLS*VAWSKR 236
Query: 190 T 188
T
Sbjct: 235 T 233
Score = 38.2 bits (77), Expect(2) = 2e-021
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGPS 67
PSP AF CS SSS A HH + A P P GPS
Sbjct: 222 PSPSAFLCSISSSSAFHHLKTSLA*KRAPPFPFWGPS 112
>gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5', mRNA sequence
Length = 286
Score = 134 bits (287), Expect = 7e-031
Identities = 59/73 (80%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AI LMARG IRM+S H
Sbjct: 53 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIXXLMARGSIRMISAH 232
Query: 357 SSQQIYTRATNT* 395
SSQQIYTR T*
Sbjct: 233 SSQQIYTRXXXT* 271
>gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5' similar to Arabidopsis thaliana sequence
At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 286
Score = 134 bits (287), Expect = 7e-031
Identities = 59/73 (80%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AI LMARG IRM+S H
Sbjct: 53 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIXXLMARGSIRMISAH 232
Query: 357 SSQQIYTRATNT* 395
SSQQIYTR T*
Sbjct: 233 SSQQIYTRXXXT* 271
>gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_022_E10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 130 bits (279), Expect = 9e-030
Identities = 58/73 (79%), Positives = 61/73 (83%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR IKDLMA+ M+S H
Sbjct: 163 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARXXIKDLMAKXXXXMISAH 342
Query: 357 SSQQIYTRATNT* 395
SSQ YTRATNT*
Sbjct: 343 SSQXXYTRATNT* 381
>gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_055_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 445
Score = 125 bits (268), Expect = 3e-028
Identities = 55/73 (75%), Positives = 59/73 (80%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+ IK MAR I + H
Sbjct: 198 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKXIKXXMARXXIXXIXAH 377
Query: 357 SSQQIYTRATNT* 395
S QIYTRATNT*
Sbjct: 378 SXXQIYTRATNT* 416
Score = 104 bits (222), Expect = 7e-022
Identities = 49/110 (44%), Positives = 69/110 (62%)
Frame = +2 / +2
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGEGKQRGAVRPGYLRQAALGGAQVQA 247
+G EEGQG +++A QV WQ +EEE+EQ KAKG+G+Q GAV G L A+ AQ+QA
Sbjct: 89 NGTEEGQGSPPILQACQVWRWQTEEEEMEQRKAKGKGEQYGAV*SGNL**ASH*SAQIQA 268
Query: 248 NHPFHPLRASEDQRLPCSEGHQGLDGAWPHSDGLGPLKPADLHQGNQYIR 397
+HPFH +R ++D C + +Q DG + L ADLHQ N +++
Sbjct: 269 HHPFHFVRQAKD*WFTCQKXYQXXDGTXXNXXDXCSLXXADLHQSN*HMK 418
Score = 74.8 bits (157), Expect(2) = 1e-022
Identities = 40/69 (57%), Positives = 46/69 (66%)
Frame = -1 / -1
Query: 394 YVLVALV*ICWLEWTETIRMRPRAIKSLMALRAREPLILRRSERMEGVICLYLGTSESSL 215
+VLVALV*IC E + RAI L+ A EPLIL S++MEGV+ LYLG S SL
Sbjct: 415 HVLVALV*ICXXE*AXIXXIXXRAIXXLIXFLASEPLILSLSDKMEGVMSLYLGASVRSL 236
Query: 214 S*VAWSNST 188
S*VA SNST
Sbjct: 235 S*VA*SNST 209
Score = 51.5 bits (106), Expect(2) = 1e-022
Identities = 20/36 (55%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 177 PSPLAFPCSTSSSFACHHRTWPASTTAAGPCPSSGP 70
P P AF CS SSS CH +TW A PCPSS P
Sbjct: 198 PFPFAFLCSISSSSVCHRQTWQAWRMGGEPCPSSVP 91
>gb|CF398801.1|CF398801 RTDS3_16_F11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_F11_A022 5', mRNA sequence
Length = 209
Score = 120 bits (256), Expect = 1e-026
Identities = 51/60 (85%), Positives = 55/60 (91%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLRINGSLAR+AIKDLMARG IRM+S H
Sbjct: 30 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 209
>gb|AW754567.1|AW754567 PC03G03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03G03, mRNA sequence
Length = 509
Score = 78.5 bits (165), Expect(2) = 2e-023
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = +3 / +2
Query: 270 ERLRINGSLARRAIKDLMARGLIRMVSVHSSQQIYTRATNT* 395
++ +INGSLAR+AIKDLMA+G IRM+S HSSQQIYTRATNT*
Sbjct: 236 QKEKINGSLARKAIKDLMAKGSIRMISAHSSQQIYTRATNT* 361
Score = 50.6 bits (104), Expect(2) = 2e-023
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 68 DGPEEGQGPAAVVEAGQVRWWQAKEEEVEQGKAKGE 175
DGP++G+G A + RWW+A+EEE+EQ KA+GE
Sbjct: 139 DGPQKGKGGALF*ASEVFRWWKAEEEEMEQRKAEGE 246
>gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_A06 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 108 bits (230), Expect = 5e-023
Identities = 48/60 (80%), Positives = 50/60 (83%)
Frame = +3 / +3
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLIRMVSVH 356
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA M S H
Sbjct: 222 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAXXXXXMXSAH 401
>gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clone RS36A12, mRNA sequence
Length = 262
Score = 107 bits (229), Expect = 7e-023
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = +3 / +1
Query: 177 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRINGSLARRAIKDLMARGLI 338
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLRINGSLAR+AIKDLMA+G I
Sbjct: 100 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSI 261
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 328,093,592
Number of Sequences: 355925
Number of extensions: 4481882
Number of successful extensions: 35776
Number of sequences better than 1.0e-020: 63
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10675693710
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)