TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clon... 149 1e-035
gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciat... 149 1e-035
gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root w... 148 4e-035
gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stresse... 148 4e-035
gb|CO158567.1|CO158567 FLD1_7_F03.g1_A029 Root flooded Pinu... 148 4e-035
gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control ... 148 4e-035
gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control ... 148 4e-035
gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control ... 148 4e-035
gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo lib... 148 4e-035
gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo lib... 148 4e-035
gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pin... 148 4e-035
gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pin... 148 4e-035
gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone lib... 147 7e-035
gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Plani... 147 7e-035
gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root w... 147 7e-035
gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clon... 147 7e-035
gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clon... 147 7e-035
gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo lib... 147 7e-035
gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo lib... 147 7e-035
gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo lib... 147 7e-035
gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo lib... 147 7e-035
gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo lib... 147 7e-035
gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo lib... 147 7e-035
gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus mag... 147 7e-035
gb|AL750292.1|AL750292 AL750292 AS Pinus pinaster cDNA clon... 145 2e-034
gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo lib... 145 2e-034
gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo li... 145 2e-034
gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side ... 145 3e-034
gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo lib... 145 3e-034
gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side ... 144 5e-034
gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo lib... 144 6e-034
gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo lib... 144 6e-034
gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo li... 144 6e-034
gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo li... 143 1e-033
gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo lib... 143 2e-033
gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo li... 143 2e-033
gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side ... 139 2e-032
gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Ve... 135 4e-031
gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Ver... 135 4e-031
gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root ... 131 5e-030
gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side ... 126 2e-028
gb|CF398801.1|CF398801 RTDS3_16_F11.g1_A022 Drought-stresse... 118 5e-026
gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clon... 108 4e-023
gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side ... 107 7e-023
>gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clone RS44H08, mRNA sequence
Length = 535
Score = 149 bits (321), Expect = 1e-035
Identities = 64/76 (84%), Positives = 69/76 (90%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLLSE PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 117 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 296
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 297 SSQQIYTRATNT*STF 344
>gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129A02 similar to 40S ribosomal protein S25,
mRNA sequence
Length = 643
Score = 149 bits (321), Expect = 1e-035
Identities = 64/76 (84%), Positives = 69/76 (90%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLLSE PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 472 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 293
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 292 SSQQIYTRATNT*STF 245
>gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV051_E09 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 782
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 218 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 397
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 398 SSQQIYTRATNT*SAF 445
>gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_F11_A022 3', mRNA sequence
Length = 527
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 72 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 251
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 252 SSQQIYTRATNT*STF 299
>gb|CO158567.1|CO158567 FLD1_7_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_F03_A029 5', mRNA sequence
Length = 597
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 64 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 243
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 244 SSQQIYTRATNT*SAF 291
>gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_E06_A029 3', mRNA sequence
Length = 595
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 55 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 234
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 235 SSQQIYTRATNT*STF 282
>gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_37_C07_A029 3', mRNA sequence
Length = 663
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 202 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 381
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 382 SSQQIYTRATNT*STF 429
>gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_D06_A029 3', mRNA sequence
Length = 611
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 157 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 336
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 337 SSQQIYTRATNT*STF 384
>gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA247, mRNA sequence
Length = 672
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 236 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 415
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 416 SSQQIYTRATNT*STF 463
>gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAK25, mRNA sequence
Length = 690
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 257 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 436
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 437 SSQQIYTRATNT*STF 484
>gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 3', mRNA sequence
Length = 841
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 522 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 343
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 342 SSQQIYTRATNT*STF 295
>gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 5', mRNA sequence
Length = 764
Score = 148 bits (318), Expect = 4e-035
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 626 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 447
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 446 SSQQIYTRATNT*STF 399
>gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11H08, mRNA sequence
Length = 526
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 176 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 355
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 356 SSQQIYTRATNT* 394
>gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_H06 5' similar to Arabidopsis
thaliana sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 158 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 337
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 338 SSQQIYTRATNT* 376
>gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_F11 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 180 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 359
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 360 SSQQIYTRATNT* 398
>gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 180 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 359
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 360 SSQQIYTRATNT* 398
>gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV068_A07 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 563
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 145 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 324
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 325 SSQQIYTRATNT* 363
>gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV131_B10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 178 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 357
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 358 SSQQIYTRATNT* 396
>gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV114_G10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 181 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 360
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 361 SSQQIYTRATNT* 399
>gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clone RS09D07, mRNA sequence
Length = 544
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 32 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 211
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 212 SSQQIYTRATNT* 250
>gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clone RS43E12, mRNA sequence
Length = 623
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 223 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 402
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 403 SSQQIYTRATNT* 441
>gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA417, mRNA sequence
Length = 446
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 299 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
>gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA602, mRNA sequence
Length = 457
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 148 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 327
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 328 SSQQIYTRATNT* 366
>gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA763, mRNA sequence
Length = 458
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
>gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ69, mRNA sequence
Length = 457
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
>gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ92, mRNA sequence
Length = 458
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
>gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB645, mRNA sequence
Length = 446
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 299 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
>gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_G09_A029 5', mRNA sequence
Length = 666
Score = 147 bits (316), Expect = 7e-035
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 145 VNNMVLFDQATYDKLLVEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 324
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 325 SSQQIYTRATNT* 363
>gb|AL750292.1|AL750292 AL750292 AS Pinus pinaster cDNA clone AS07H03 similar to RP S25,
mRNA sequence
Length = 595
Score = 145 bits (312), Expect = 2e-034
Identities = 63/72 (87%), Positives = 67/72 (93%)
Frame = +2 / +3
Query: 209 NNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHS 388
NN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S HS
Sbjct: 3 NNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAHS 182
Query: 389 SQQIYTRATNT* 424
SQQIYTRATNT*
Sbjct: 183 SQQIYTRATNT* 218
>gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB53, mRNA sequence
Length = 457
Score = 145 bits (312), Expect = 2e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN LFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 310 VNNMALFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
>gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME934, mRNA sequence
Length = 475
Score = 145 bits (312), Expect = 2e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN LFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 330 VNNMALFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 151
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 150 SSQQIYTRATNT* 112
>gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_H01 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 145 bits (311), Expect = 3e-034
Identities = 62/76 (81%), Positives = 67/76 (88%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR IKDLMA+G IRM+S H
Sbjct: 204 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARXXIKDLMARGSIRMISAH 383
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTRATNT* F
Sbjct: 384 SSQQIYTRATNT*STF 431
>gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACP25, mRNA sequence
Length = 457
Score = 145 bits (311), Expect = 3e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 310 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SQQIYTRATNT*
Sbjct: 130 PSQQIYTRATNT* 92
>gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_H05 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 144 bits (310), Expect = 5e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 130 VNNMVLFDQATYDKLLVEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 309
Query: 386 SSQQIYTRATNT* 424
SSQ IYTRATNT*
Sbjct: 310 SSQXIYTRATNT* 348
>gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACY14, mRNA sequence
Length = 445
Score = 144 bits (309), Expect = 6e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDK L EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 148 VNNMVLFDQATYDKPLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 327
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 328 SSQQIYTRATNT* 366
>gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA74, mRNA sequence
Length = 443
Score = 144 bits (309), Expect = 6e-034
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDK L EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 299 VNNMVLFDQATYDKPLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 120
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 119 SSQQIYTRATNT* 81
>gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19 3' end, mRNA sequence
Length = 713
Score = 144 bits (309), Expect = 6e-034
Identities = 62/76 (81%), Positives = 68/76 (89%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 231 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 410
Query: 386 SSQQIYTRATNT*GVF 433
SSQ IYTRATNT* F
Sbjct: 411 SSQ*IYTRATNT*STF 458
>gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19, mRNA sequence
Length = 563
Score = 143 bits (307), Expect = 1e-033
Identities = 61/76 (80%), Positives = 68/76 (89%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+R+R+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 445 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRIRINGSLARKAIKDLMARGSIRMISAH 266
Query: 386 SSQQIYTRATNT*GVF 433
SSQ IYTRATNT* F
Sbjct: 265 SSQ*IYTRATNT*STF 218
>gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB488, mRNA sequence
Length = 457
Score = 143 bits (306), Expect = 2e-033
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
V+N VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+A KDLMAKG IRM+S H
Sbjct: 310 VSNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKATKDLMAKGSIRMISAH 131
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 130 SSQQIYTRATNT* 92
>gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME170, mRNA sequence
Length = 477
Score = 143 bits (306), Expect = 2e-033
Identities = 62/73 (84%), Positives = 67/73 (91%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
V+N VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+A KDLMAKG IRM+S H
Sbjct: 330 VSNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKATKDLMAKGSIRMISAH 151
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 150 SSQQIYTRATNT* 112
>gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_D10 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 139 bits (298), Expect = 2e-032
Identities = 61/73 (83%), Positives = 65/73 (89%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG IRM+S H
Sbjct: 222 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSIRMISAH 401
Query: 386 SSQQIYTRATNT* 424
SSQQIYT A T*
Sbjct: 402 SSQQIYTXAXXT* 440
>gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5', mRNA sequence
Length = 286
Score = 135 bits (289), Expect = 4e-031
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AI LMA+G IRM+S H
Sbjct: 53 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIXXLMARGSIRMISAH 232
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTR T* F
Sbjct: 233 SSQQIYTRXXXT*STF 280
>gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5' similar to Arabidopsis thaliana sequence
At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 286
Score = 135 bits (289), Expect = 4e-031
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AI LMA+G IRM+S H
Sbjct: 53 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIXXLMARGSIRMISAH 232
Query: 386 SSQQIYTRATNT*GVF 433
SSQQIYTR T* F
Sbjct: 233 SSQQIYTRXXXT*STF 280
>gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_022_E10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 131 bits (281), Expect = 5e-030
Identities = 58/73 (79%), Positives = 61/73 (83%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR IKDLMAK M+S H
Sbjct: 163 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARXXIKDLMAKXXXXMISAH 342
Query: 386 SSQQIYTRATNT* 424
SSQ YTRATNT*
Sbjct: 343 SSQXXYTRATNT* 381
>gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_055_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 445
Score = 126 bits (270), Expect = 2e-028
Identities = 54/76 (71%), Positives = 60/76 (78%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+ IK MA+ I + H
Sbjct: 198 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKXIKXXMARXXIXXIXAH 377
Query: 386 SSQQIYTRATNT*GVF 433
S QIYTRATNT* F
Sbjct: 378 SXXQIYTRATNT*STF 425
>gb|CF398801.1|CF398801 RTDS3_16_F11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_F11_A022 5', mRNA sequence
Length = 209
Score = 118 bits (252), Expect = 5e-026
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PKYK ITPSILS+RLR+NGSLAR+AIKDLMA+G IRM+S H
Sbjct: 30 VNNMVLFDQATYDKLLTEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 209
>gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clone RS36A12, mRNA sequence
Length = 262
Score = 108 bits (231), Expect = 4e-023
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLI 367
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMAKG I
Sbjct: 100 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAKGSI 261
>gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_A06 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 107 bits (229), Expect = 7e-023
Identities = 47/60 (78%), Positives = 50/60 (83%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL EVPKYK ITPSILS+RLR+NGSLAR+AIKDLMA M S H
Sbjct: 222 VNNMVLFDQATYDKLLLEVPKYKLITPSILSDRLRINGSLARKAIKDLMAXXXXXMXSAH 401
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 248,220,995
Number of Sequences: 355925
Number of extensions: 3059585
Number of successful extensions: 22003
Number of sequences better than 1.0e-020: 61
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9974764325
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)