TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131555.2.3
         (622 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR018063.1|DR018063  STRS1_20_F06.b1_A034 Shoot tip pitch...   104   7e-022
gb|DR018147.1|DR018147  STRS1_20_F06.g1_A034 Shoot tip pitch...   103   1e-021

>gb|DR018063.1|DR018063 STRS1_20_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_20_F06_A034 3', mRNA sequence
          Length = 770

 Score =  104 bits (221), Expect = 7e-022
 Identities = 41/82 (50%), Positives = 61/82 (74%)
 Frame = -3 / +3

                                                                       
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
           SS I+++   GD E  EN  R +VDVRDVA A +LAYE P A+GRY+C++H++K  ++++
Sbjct: 147 SSLILVKLLNGDLERCENKARVIVDVRDVAKAHILAYEIPSAAGRYLCTAHSVKTKELVD 326

                                 
Query: 440 ILKTLYPSYPYPKNFVEDDVNS 375
           ILK LYP Y YPK++V+  ++S
Sbjct: 327 ILKRLYPQYNYPKDYVDVGLDS 392



>gb|DR018147.1|DR018147 STRS1_20_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_20_F06_A034 5', mRNA sequence
          Length = 620

 Score =  103 bits (219), Expect = 1e-021
 Identities = 40/77 (51%), Positives = 58/77 (75%)
 Frame = -3 / +3

                                                                       
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
           SS I+++   GD E  EN  R +VDVRDVA A +LAYE P A+GRY+C++H++K  ++++
Sbjct: 387 SSLILVKLLNGDLERCENKARVIVDVRDVAKAHILAYEIPSAAGRYLCTAHSVKTKELVD 566

                            
Query: 440 ILKTLYPSYPYPKNFVE 390
           ILK LYP Y YPK++V+
Sbjct: 567 ILKRLYPQYNYPKDYVD 617



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 334,471,301
Number of Sequences: 355925
Number of extensions: 4443134
Number of successful extensions: 40772
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8412403350
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)