TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131554.2.6
(761 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW289562.1|AW289562 NXNV002C03F Nsf Xylem Normal wood Ve... 179 2e-044
gb|AL750508.1|AL750508 AL750508 RN Pinus pinaster cDNA clon... 179 2e-044
gb|BX249832.1|BX249832 BX249832 Pinus pinaster differenciat... 179 2e-044
gb|BX254626.1|BX254626 BX254626 Pinus pinaster differenciat... 179 2e-044
gb|BX255101.1|BX255101 BX255101 Pinus pinaster differenciat... 179 2e-044
gb|CD028120.1|CD028120 NXNV002C03 Nsf Xylem Normal wood Ver... 179 2e-044
gb|CF470949.1|CF470949 RTDS1_15_A11.g1_A015 Drought-stresse... 179 2e-044
gb|CO409817.1|CO409817 EST840202 Sequencing ESTs from loblo... 179 2e-044
gb|CO369332.1|CO369332 RTK1_46_H12.b1_A029 Roots minus pota... 179 2e-044
gb|CV035136.1|CV035136 RTNACL1_13_G08.g1_A029 Roots plus ad... 179 2e-044
gb|CV138874.1|CV138874 EST850083 Sequencing ESTs from loblo... 179 2e-044
gb|CV146683.1|CV146683 EST857892 Sequencing ESTs from loblo... 179 2e-044
gb|CX652743.1|CX652743 COLD1_61_E04.b1_A029 Root cold Pinus... 179 2e-044
gb|CX652822.1|CX652822 COLD1_61_E04.g1_A029 Root cold Pinus... 179 2e-044
gb|CX652935.1|CX652935 COLD1_62_H12.b1_A029 Root cold Pinus... 179 2e-044
gb|CX653021.1|CX653021 COLD1_62_H12.g1_A029 Root cold Pinus... 179 2e-044
gb|DR015433.1|DR015433 STRS1_3_B05.g1_A034 Shoot tip pitch ... 179 2e-044
gb|DR021241.1|DR021241 STRS1_43_G06.b1_A034 Shoot tip pitch... 179 2e-044
gb|DR021318.1|DR021318 STRS1_43_G06.g1_A034 Shoot tip pitch... 179 2e-044
gb|DR093926.1|DR093926 STRR1_11_G02.b1_A033 Stem Response R... 179 2e-044
gb|DR094004.1|DR094004 STRR1_11_G02.g1_A033 Stem Response R... 179 2e-044
gb|DR689263.1|DR689263 EST1079349 Normalized pine embryo li... 179 2e-044
gb|DR695094.1|DR695094 EST1085187 Normalized pine embryo li... 179 2e-044
gb|DT625715.1|DT625715 EST1157639 Sequencing ESTs from lobl... 179 2e-044
gb|DT626552.1|DT626552 EST1158476 Sequencing ESTs from lobl... 179 2e-044
gb|DT624924.1|DT624924 EST1159199 Sequencing ESTs from lobl... 179 2e-044
gb|DT635603.1|DT635603 EST1150534 Normalized pine embryo li... 179 2e-044
gb|BX253498.1|BX253498 BX253498 Pinus pinaster differenciat... 178 4e-044
gb|BM367468.1|BM367468 NXLV_049_F09_F NXLV (Nsf Xylem Late ... 178 4e-044
gb|CF476378.1|CF476378 RTWW2_22_C03.g1_A021 Well-watered lo... 178 4e-044
gb|BX677355.1|BX677355 BX677355 RN Pinus pinaster cDNA clon... 178 4e-044
gb|CX715301.1|CX715301 RTPQ1_33_F02.b1_A032 Roots treated w... 178 4e-044
gb|DR089686.1|DR089686 RTAL1_10_E09.b1_A029 Roots plus adde... 178 4e-044
gb|DR089771.1|DR089771 RTAL1_10_E09.g1_A029 Roots plus adde... 178 4e-044
gb|DR682322.1|DR682322 EST1072397 Normalized pine embryo li... 178 4e-044
gb|DR687391.1|DR687391 EST1077473 Normalized pine embryo li... 178 4e-044
gb|DR692290.1|DR692290 EST1082378 Normalized pine embryo li... 178 4e-044
gb|DT630968.1|DT630968 EST1145899 Normalized pine embryo li... 178 4e-044
gb|DT634048.1|DT634048 EST1148979 Normalized pine embryo li... 178 4e-044
gb|DT637326.1|DT637326 EST1152257 Normalized pine embryo li... 178 4e-044
gb|CV035056.1|CV035056 RTNACL1_13_G08.b1_A029 Roots plus ad... 177 6e-044
gb|AW697692.1|AW697692 ST65E08 Pine TriplEx shoot tip libra... 177 8e-044
gb|CF388178.1|CF388178 RTDR2_1_G07.g1_A021 Loblolly pine ro... 175 3e-043
gb|DR694482.1|DR694482 EST1084574 Normalized pine embryo li... 175 3e-043
gb|DN611308.1|DN611308 EST964358 Subtracted pine embryo lib... 175 4e-043
gb|DT628140.1|DT628140 EST1156889 Subtracted pine embryo li... 175 4e-043
gb|BX254770.1|BX254770 BX254770 Pinus pinaster differenciat... 174 5e-043
gb|BQ702461.1|BQ702461 NXSI_128_H07_F NXSI (Nsf Xylem Side ... 171 7e-042
gb|BX250390.1|BX250390 BX250390 Pinus pinaster differenciat... 169 2e-041
gb|AW697623.1|AW697623 ST64F01 Pine TriplEx shoot tip libra... 166 2e-040
gb|CX651136.1|CX651136 COLD1_50_H10.b1_A029 Root cold Pinus... 166 2e-040
gb|BQ634147.1|BQ634147 NXRV064_D02_F NXRV (Nsf Xylem Root w... 165 4e-040
gb|DT639072.1|DT639072 EST1154003 Normalized pine embryo li... 162 2e-039
gb|DT638657.1|DT638657 EST1153588 Normalized pine embryo li... 158 4e-038
gb|AW043330.1|AW043330 ST32A12 Pine TriplEx shoot tip libra... 116 1e-037
gb|DN457774.1|DN457774 EST953573 Sequencing ESTs from loblo... 155 3e-037
gb|DT625321.1|DT625321 EST1159596 Sequencing ESTs from lobl... 155 3e-037
gb|AA739509.1|AA739509 274 PtIFG2 Pinus taeda cDNA clone 84... 120 3e-036
gb|BE656925.1|BE656925 NXCI_058_C02_F NXCI (Nsf Xylem Compr... 148 5e-035
gb|BX679616.1|BX679616 BX679616 RS Pinus pinaster cDNA clon... 140 9e-033
gb|BG319305.1|BG319305 NXPV_026_D08_F NXPV (Nsf Xylem Plani... 140 1e-032
gb|CD016501.1|CD016501 NXCI_050_H04_F NXCI (Nsf Xylem Compr... 140 1e-032
gb|AW981775.1|AW981775 PC18E11 Pine TriplEx pollen cone lib... 90 5e-031
gb|BQ634072.1|BQ634072 NXRV065_D12_F NXRV (Nsf Xylem Root w... 133 2e-030
gb|AW290666.1|AW290666 NXNV044G07F Nsf Xylem Normal wood Ve... 116 2e-025
gb|BF169847.1|BF169847 NXCI_127_B02_F NXCI (Nsf Xylem Compr... 116 2e-025
gb|CD027332.1|CD027332 NXNV044G07 Nsf Xylem Normal wood Ver... 116 2e-025
gb|CF666624.1|CF666624 RTCNT1_24_F01.g1_A029 Root control P... 75 1e-024
gb|AW064813.1|AW064813 ST36B01 Pine TriplEx shoot tip libra... 101 5e-021
>gb|AW289562.1|AW289562 NXNV002C03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV002C03 5', mRNA sequence
Length = 462
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 300
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 301 VTAMDVVYALKRQGRTLY 354
>gb|AL750508.1|AL750508 AL750508 RN Pinus pinaster cDNA clone RN03C09 similar to HISTONE
H4, mRNA sequence
Length = 592
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 126 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 305
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 306 VTAMDVVYALKRQGRTLY 359
>gb|BX249832.1|BX249832 BX249832 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029C01 similar to HISTONE H4, mRNA sequence
Length = 694
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 132 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 311
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 312 VTAMDVVYALKRQGRTLY 365
>gb|BX254626.1|BX254626 BX254626 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP101E08 similar to HISTONE H4, mRNA sequence
Length = 669
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 144 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 323
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 324 VTAMDVVYALKRQGRTLY 377
Score = 106 bits (226), Expect = 2e-022
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = +1 / -3
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 349 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 170
Query: 595 MPWMLS 612
+PWMLS
Sbjct: 169 IPWMLS 152
>gb|BX255101.1|BX255101 BX255101 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110H01 similar to HISTONE H4, mRNA sequence
Length = 494
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 135 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 314
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 315 VTAMDVVYALKRQGRTLY 368
>gb|CD028120.1|CD028120 NXNV002C03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV002C03 5' similar to Arabidopsis thaliana sequence
At5g59970 histone H4 - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 462
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 300
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 301 VTAMDVVYALKRQGRTLY 354
>gb|CF470949.1|CF470949 RTDS1_15_A11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_A11_A015 5', mRNA sequence
Length = 680
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 133 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 312
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 313 VTAMDVVYALKRQGRTLY 366
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -1
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 338 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 159
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 158 IPWILS 141
>gb|CO409817.1|CO409817 EST840202 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKU91 5' end, mRNA sequence
Length = 742
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 155 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 334
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 335 VTAMDVVYALKRQGRTLY 388
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -2
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 366 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 187
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 186 LVMP*MLS 163
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 409 SMLTAKAVEGSALPLERIDDIH 344
>gb|CO369332.1|CO369332 RTK1_46_H12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_H12_A029 3', mRNA sequence
Length = 842
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / -3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 720 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 541
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 540 VTAMDVVYALKRQGRTLY 487
>gb|CV035136.1|CV035136 RTNACL1_13_G08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G08_A029 5', mRNA sequence
Length = 633
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 104 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 283
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 284 VTAMDVVYALKRQGRTLY 337
>gb|CV138874.1|CV138874 EST850083 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB830 5' end, mRNA sequence
Length = 749
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 153 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 332
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 333 VTAMDVVYALKRQGRTLY 386
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -2
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 364 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 185
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 184 LVMP*MLS 161
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 407 SMLTAKAVEGSALPLERIDDIH 342
>gb|CV146683.1|CV146683 EST857892 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDZ16 5' end, mRNA sequence
Length = 651
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 29 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 208
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 209 VTAMDVVYALKRQGRTLY 262
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -1
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 234 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 55
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 54 IPWILS 37
>gb|CX652743.1|CX652743 COLD1_61_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_E04_A029 3', mRNA sequence
Length = 778
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 145 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 324
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 325 VTAMDVVYALKRQGRTLY 378
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -3
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 350 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 171
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 170 IPWILS 153
>gb|CX652822.1|CX652822 COLD1_61_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_E04_A029 5', mRNA sequence
Length = 751
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 122 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 301
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 302 VTAMDVVYALKRQGRTLY 355
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -2
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 327 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 148
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 147 IPWILS 130
>gb|CX652935.1|CX652935 COLD1_62_H12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_H12_A029 3', mRNA sequence
Length = 768
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 147 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 326
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 327 VTAMDVVYALKRQGRTLY 380
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -3
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 352 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 173
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 172 IPWILS 155
>gb|CX653021.1|CX653021 COLD1_62_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_H12_A029 5', mRNA sequence
Length = 770
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 127 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 306
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 307 VTAMDVVYALKRQGRTLY 360
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -1
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 332 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 153
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 152 IPWILS 135
>gb|DR015433.1|DR015433 STRS1_3_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_B05_A034 5', mRNA sequence
Length = 904
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / -2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 507 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 328
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 327 VTAMDVVYALKRQGRTLY 274
Score = 95.0 bits (201), Expect(2) = 3e-022
Identities = 48/66 (72%), Positives = 50/66 (75%)
Frame = +1 / +2
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTV ACSV VTAS MTFSR I TP VSS*M P +RLTPPLLA +AG V
Sbjct: 302 A*TTSMAVTVFLLACSVYVTASLMTFSRNIFKTPLVSS*MRPLIRLTPPLLARRLMAGFV 481
Query: 595 MPWMLS 612
MP MLS
Sbjct: 482 MP*MLS 499
Score = 30.4 bits (60), Expect(2) = 3e-022
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
+ L ++ +EG+ALSL+ ++DIH
Sbjct: 253 ASLTSKPIEGSALSLQSINDIH 318
>gb|DR021241.1|DR021241 STRS1_43_G06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_43_G06_A034 3', mRNA sequence
Length = 745
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 154 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 333
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 334 VTAMDVVYALKRQGRTLY 387
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -3
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 365 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 186
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 185 LVMP*MLS 162
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 408 SMLTAKAVEGSALPLERIDDIH 343
>gb|DR021318.1|DR021318 STRS1_43_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_43_G06_A034 5', mRNA sequence
Length = 515
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 117 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 296
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 297 VTAMDVVYALKRQGRTLY 350
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -2
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 328 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 149
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 148 LVMP*MLS 125
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 371 SMLTAKAVEGSALPLERIDDIH 306
>gb|DR093926.1|DR093926 STRR1_11_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_G02_A033 3', mRNA sequence
Length = 808
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / -1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 700 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 521
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 520 VTAMDVVYALKRQGRTLY 467
>gb|DR094004.1|DR094004 STRR1_11_G02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_G02_A033 5', mRNA sequence
Length = 905
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / -3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 846 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 667
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 666 VTAMDVVYALKRQGRTLY 613
>gb|DR689263.1|DR689263 EST1079349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACG16 3' end, mRNA sequence
Length = 600
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 327
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 328 VTAMDVVYALKRQGRTLY 381
>gb|DR695094.1|DR695094 EST1085187 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK40 3' end, mRNA sequence
Length = 573
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 152 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 331
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 332 VTAMDVVYALKRQGRTLY 385
Score = 117 bits (251), Expect(2) = 8e-032
Identities = 56/68 (82%), Positives = 60/68 (88%)
Frame = +1 / -1
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS +TFSRKI +TP VSS*MSP MRLTPPLLA +AG
Sbjct: 363 LSA*TTSMAVTVLRLACSV*VTASLITFSRKIFNTPLVSS*MSPLMRLTPPLLARRLMAG 184
Query: 589 LVMPWMLS 612
LV+PWMLS
Sbjct: 183 LVIPWMLS 160
Score = 39.6 bits (80), Expect(2) = 8e-032
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3 / -3
Query: 372 LAAEAVEGAALSLERVDDIH 431
L AEA+EG+AL LER+DDIH
Sbjct: 400 LTAEAIEGSALPLERIDDIH 341
>gb|DT625715.1|DT625715 EST1157639 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA292 5' end, mRNA sequence
Length = 746
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 155 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 334
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 335 VTAMDVVYALKRQGRTLY 388
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -3
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 366 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 187
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 186 LVMP*MLS 163
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 409 SMLTAKAVEGSALPLERIDDIH 344
>gb|DT626552.1|DT626552 EST1158476 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC06 5' end, mRNA sequence
Length = 745
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 153 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 332
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 333 VTAMDVVYALKRQGRTLY 386
Score = 109 bits (232), Expect(2) = 6e-029
Identities = 54/68 (79%), Positives = 57/68 (83%)
Frame = +1 / -1
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS MTFS+KI TP VSS*MSP +R TPPLLA +AG
Sbjct: 364 LSA*TTSMAVTVLRLACSV*VTASLMTFSKKIFKTPLVSS*MSPLIRFTPPLLARRLMAG 185
Query: 589 LVMPWMLS 612
LVMP MLS
Sbjct: 184 LVMP*MLS 161
Score = 38.6 bits (78), Expect(2) = 6e-029
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -3
Query: 366 SDLAAEAVEGAALSLERVDDIH 431
S L A+AVEG+AL LER+DDIH
Sbjct: 407 SMLTAKAVEGSALPLERIDDIH 342
>gb|DT624924.1|DT624924 EST1159199 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAK02 5' end, mRNA sequence
Length = 651
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 29 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 208
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 209 VTAMDVVYALKRQGRTLY 262
Score = 104 bits (222), Expect = 7e-022
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1 / -1
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR ACSV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 234 A*TTSMAVTVLRLACSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 55
Query: 595 MPWMLS 612
+PW+LS
Sbjct: 54 IPWILS 37
>gb|DT635603.1|DT635603 EST1150534 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGI61 3' end, mRNA sequence
Length = 605
Score = 179 bits (386), Expect = 2e-044
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 156 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 335
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 336 VTAMDVVYALKRQGRTLY 389
>gb|BX253498.1|BX253498 BX253498 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP084C08, mRNA sequence
Length = 653
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 278
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 279 VTAMDVVYSLKRQGRTLY 332
>gb|BM367468.1|BM367468 NXLV_049_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_F09 5' similar to Arabidopsis thaliana
sequence At5g59970 histone H4 - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 634
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 151 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 330
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 331 VTAMDVVYSLKRQGRTLY 384
Score = 99.1 bits (210), Expect(2) = 3e-024
Identities = 50/68 (73%), Positives = 54/68 (79%)
Frame = +1 / -3
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LS *TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP MRLTPPLLA IAG
Sbjct: 362 LSE*TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPLMRLTPPLLARRLIAG 183
Query: 589 LVMPWMLS 612
LV+P MLS
Sbjct: 182 LVIP*MLS 159
Score = 32.7 bits (65), Expect(2) = 3e-024
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3 / -2
Query: 375 AAEAVEGAALSLERVDDIH 431
A+E VEG+AL LERV++IH
Sbjct: 396 ASETVEGSALPLERVNNIH 340
>gb|CF476378.1|CF476378 RTWW2_22_C03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_C03_A021 5', mRNA sequence
Length = 699
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 49 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 228
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 229 VTAMDVVYSLKRQGRTLY 282
>gb|BX677355.1|BX677355 BX677355 RN Pinus pinaster cDNA clone RN21E11, mRNA sequence
Length = 545
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 278
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 279 VTAMDVVYSLKRQGRTLY 332
Score = 99.6 bits (211), Expect(2) = 4e-023
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / -2
Query: 418 *TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLVM 597
*TTS+AVTV ACSV VTAS MTFS+KI TP VSS*+ P MRLTPPLLA +AGLVM
Sbjct: 301 *TTSIAVTVFLLACSVYVTASLMTFSKKIFKTPLVSS*IRPLMRLTPPLLAKRLMAGLVM 122
Query: 598 PWMLS 612
PW+LS
Sbjct: 121 PWILS 107
Score = 28.6 bits (56), Expect(2) = 4e-023
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 375 AAEAVEGAALSLERVDDIH 431
A++AV+ +ALS + VDDIH
Sbjct: 344 ASKAVKSSALSFQGVDDIH 288
>gb|CX715301.1|CX715301 RTPQ1_33_F02.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_F02_A032 3', mRNA sequence
Length = 639
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / -1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 528 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 349
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 348 VTAMDVVYSLKRQGRTLY 295
Score = 98.7 bits (209), Expect(2) = 8e-024
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = +1 / +2
Query: 412 SA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGL 591
S *TTSMAVTV ACSV*VTAS MTFS+KI TP VSS*M P MRLTPPLLA IAG
Sbjct: 320 SE*TTSMAVTVFLLACSV*VTASLMTFSKKIFRTPLVSS*MRPLMRLTPPLLARRLIAGF 499
Query: 592 VMPWMLS 612
VMP +LS
Sbjct: 500 VMP*ILS 520
Score = 31.8 bits (63), Expect(2) = 8e-024
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 375 AAEAVEGAALSLERVDDIH 431
A+E V+G+AL L+RVD+IH
Sbjct: 283 ASETVKGSALPLQRVDNIH 339
>gb|DR089686.1|DR089686 RTAL1_10_E09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_E09_A029 3', mRNA sequence
Length = 666
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 110 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 289
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 290 VTAMDVVYSLKRQGRTLY 343
>gb|DR089771.1|DR089771 RTAL1_10_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_E09_A029 5', mRNA sequence
Length = 611
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 88 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 267
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 268 VTAMDVVYSLKRQGRTLY 321
>gb|DR682322.1|DR682322 EST1072397 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA913 3' end, mRNA sequence
Length = 774
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 125 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 304
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 305 VTAMDVVYSLKRQGRTLY 358
Score = 94.5 bits (200), Expect(2) = 2e-021
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / -1
Query: 418 *TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLVM 597
*TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP +RLTPPLLA +AGLVM
Sbjct: 327 *TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPLIRLTPPLLARRLMAGLVM 148
Query: 598 PWMLS 612
P MLS
Sbjct: 147 P*MLS 133
Score = 27.6 bits (54), Expect(2) = 2e-021
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 375 AAEAVEGAALSLERVDDIH 431
A+EAV+G+AL L VD+IH
Sbjct: 370 ASEAVKGSALPL*GVDNIH 314
>gb|DR687391.1|DR687391 EST1077473 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABR89 3' end, mRNA sequence
Length = 499
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 135 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 314
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 315 VTAMDVVYSLKRQGRTLY 368
Score = 96.8 bits (205), Expect(2) = 1e-022
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +1 / -1
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
L *TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP MRLTPPLLA IAG
Sbjct: 346 LRE*TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPLMRLTPPLLARRLIAG 167
Query: 589 LVMPWMLS 612
LV+P MLS
Sbjct: 166 LVIP*MLS 143
Score = 29.5 bits (58), Expect(2) = 1e-022
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 375 AAEAVEGAALSLERVDDIH 431
A+E VEG+AL LE V++IH
Sbjct: 380 ASETVEGSALPLEGVNNIH 324
>gb|DR692290.1|DR692290 EST1082378 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADK45 3' end, mRNA sequence
Length = 577
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 300
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 301 VTAMDVVYSLKRQGRTLY 354
>gb|DT630968.1|DT630968 EST1145899 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF323 3' end, mRNA sequence
Length = 730
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 133 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 312
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 313 VTAMDVVYSLKRQGRTLY 366
Score = 94.5 bits (200), Expect(2) = 2e-021
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +1 / -3
Query: 418 *TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLVM 597
*TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP +RLTPPLLA +AGLVM
Sbjct: 335 *TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPLIRLTPPLLARRLMAGLVM 156
Query: 598 PWMLS 612
P MLS
Sbjct: 155 P*MLS 141
Score = 27.6 bits (54), Expect(2) = 2e-021
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 375 AAEAVEGAALSLERVDDIH 431
A+EAV+G+AL L VD+IH
Sbjct: 378 ASEAVKGSALPL*GVDNIH 322
>gb|DT634048.1|DT634048 EST1148979 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG167 3' end, mRNA sequence
Length = 506
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 143 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 322
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 323 VTAMDVVYSLKRQGRTLY 376
Score = 96.8 bits (205), Expect(2) = 1e-022
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +1 / -3
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
L *TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP MRLTPPLLA IAG
Sbjct: 354 LRE*TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPLMRLTPPLLARRLIAG 175
Query: 589 LVMPWMLS 612
LV+P MLS
Sbjct: 174 LVIP*MLS 151
Score = 29.5 bits (58), Expect(2) = 1e-022
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 375 AAEAVEGAALSLERVDDIH 431
A+E VEG+AL LE V++IH
Sbjct: 388 ASETVEGSALPLEGVNNIH 332
>gb|DT637326.1|DT637326 EST1152257 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH231 3' end, mRNA sequence
Length = 478
Score = 178 bits (383), Expect = 4e-044
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 201
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 202 VTAMDVVYSLKRQGRTLY 255
>gb|CV035056.1|CV035056 RTNACL1_13_G08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G08_A029 3', mRNA sequence
Length = 820
Score = 177 bits (382), Expect = 6e-044
Identities = 77/78 (98%), Positives = 77/78 (98%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPA RRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 30 VLRDNIQGITKPAFRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 209
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 210 VTAMDVVYALKRQGRTLY 263
>gb|AW697692.1|AW697692 ST65E08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST65E08, mRNA sequence
Length = 365
Score = 177 bits (381), Expect = 8e-044
Identities = 77/78 (98%), Positives = 77/78 (98%)
Frame = -1 / +3
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKR SGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 54 VLRDNIQGITKPAIRRLARRGGVKRTSGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 233
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 234 VTAMDVVYALKRQGRTLY 287
>gb|CF388178.1|CF388178 RTDR2_1_G07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_G07_A021 5', mRNA
sequence
Length = 559
Score = 175 bits (377), Expect = 3e-043
Identities = 75/78 (96%), Positives = 78/78 (100%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLE+VIRDAVTYTEHARRKT
Sbjct: 110 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEHVIRDAVTYTEHARRKT 289
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQG+TLY
Sbjct: 290 VTAMDVVYALKRQGKTLY 343
Score = 113 bits (242), Expect(2) = 5e-027
Identities = 53/68 (77%), Positives = 57/68 (83%)
Frame = +1 / -2
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA TTSMAVTV RRACSV VTASRMT SR L TPRVSS*++PEMRLTPP A R+AG
Sbjct: 321 LSAYTTSMAVTVFRRACSVYVTASRMTCSRNTLRTPRVSS*INPEMRLTPPRRARRRMAG 142
Query: 589 LVMPWMLS 612
LV+PWMLS
Sbjct: 141 LVIPWMLS 118
Score = 27.6 bits (54), Expect(2) = 5e-027
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3 / -1
Query: 372 LAAEAVEGAALSLERVDDIH 431
L E+V+G L+ ERV D+H
Sbjct: 358 LTTESVQGLTLTFERVYDVH 299
>gb|DR694482.1|DR694482 EST1084574 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAED11 3' end, mRNA sequence
Length = 726
Score = 175 bits (377), Expect = 3e-043
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRI GLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 68 VLRDNIQGITKPAIRRLARRGGVKRIIGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 247
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 248 VTAMDVVYSLKRQGRTLY 301
Score = 98.2 bits (208), Expect(2) = 2e-023
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = +1 / -1
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LS *TTS+AVTV ACSV VTAS +TFS+KI TP VSS*MSP MRLTPPLLA +AG
Sbjct: 279 LSE*TTSIAVTVFLLACSVYVTASLITFSKKIFKTPLVSS*MSPMMRLTPPLLARRLMAG 100
Query: 589 LVMPWMLS 612
LV+P MLS
Sbjct: 99 LVIP*MLS 76
Score = 30.9 bits (61), Expect(2) = 2e-023
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3 / -3
Query: 375 AAEAVEGAALSLERVDDIH 431
A++AVEG+AL LE VD+IH
Sbjct: 313 ASKAVEGSALPLE*VDNIH 257
>gb|DN611308.1|DN611308 EST964358 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB044, mRNA sequence
Length = 510
Score = 175 bits (376), Expect = 4e-043
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVI DAVTYTEHARRKT
Sbjct: 131 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIGDAVTYTEHARRKT 310
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 311 VTAMDVVYSLKRQGRTLY 364
>gb|DT628140.1|DT628140 EST1156889 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCU71 5' end, mRNA sequence
Length = 510
Score = 175 bits (376), Expect = 4e-043
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = -1 / -2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVI DAVTYTEHARRKT
Sbjct: 380 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIGDAVTYTEHARRKT 201
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVY+LKRQGRTLY
Sbjct: 200 VTAMDVVYSLKRQGRTLY 147
>gb|BX254770.1|BX254770 BX254770 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104C04 similar to HISTONE H4, mRNA sequence
Length = 377
Score = 174 bits (375), Expect = 5e-043
Identities = 77/78 (98%), Positives = 77/78 (98%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE ARRKT
Sbjct: 61 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTELARRKT 240
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALKRQGRTLY
Sbjct: 241 VTAMDVVYALKRQGRTLY 294
Score = 101 bits (216), Expect = 5e-021
Identities = 49/66 (74%), Positives = 54/66 (81%)
Frame = +1 / -1
Query: 415 A*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLV 594
A*TTSMAVTVLR A SV*VTASR+TFS+KI TP VSS*+SP +R TPP LA IAG V
Sbjct: 266 A*TTSMAVTVLRLASSV*VTASRITFSKKIFRTPLVSS*ISPLIRFTPPRLARRLIAGFV 87
Query: 595 MPWMLS 612
+PWMLS
Sbjct: 86 IPWMLS 69
>gb|BQ702461.1|BQ702461 NXSI_128_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_H07 5' similar to Arabidopsis thaliana
sequence At5g59970 histone H4 - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 171 bits (367), Expect = 7e-042
Identities = 75/78 (96%), Positives = 75/78 (96%)
Frame = -1 / +2
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 313
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALK RTLY
Sbjct: 314 VTAMDVVYALKXXXRTLY 367
Score = 117 bits (251), Expect(2) = 2e-030
Identities = 56/68 (82%), Positives = 60/68 (88%)
Frame = +1 / -3
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS +TFSRKI +TP VSS*MSP MRLTPPLLA +AG
Sbjct: 345 LSA*TTSMAVTVLRLACSV*VTASLITFSRKIFNTPLVSS*MSPLMRLTPPLLARRLMAG 166
Query: 589 LVMPWMLS 612
LV+PWMLS
Sbjct: 165 LVIPWMLS 142
Score = 35.0 bits (70), Expect(2) = 2e-030
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3 / -2
Query: 372 LAAEAVEGAALSLERVDDIH 431
L AEA+E +A LER+DDIH
Sbjct: 382 LTAEAIESSAXXLERIDDIH 323
>gb|BX250390.1|BX250390 BX250390 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP036D02, mRNA sequence
Length = 470
Score = 169 bits (364), Expect = 2e-041
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = -1 / +2
Query: 608 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAM 429
NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAM
Sbjct: 2 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAM 181
Query: 428 DVVYALKRQGRTLY 387
DVVY+LKRQGRTLY
Sbjct: 182 DVVYSLKRQGRTLY 223
Score = 97.7 bits (207), Expect(2) = 1e-022
Identities = 46/64 (71%), Positives = 51/64 (79%)
Frame = +1 / -3
Query: 418 *TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAGLVM 597
*TTS+AVTV ACSV VTAS MTFS+KI TP VSS*+ P MRLTPPLLA +AGLVM
Sbjct: 192 *TTSIAVTVFLLACSVYVTASLMTFSKKIFKTPLVSS*IRPLMRLTPPLLAKRLMAGLVM 13
Query: 598 PWML 609
PW+L
Sbjct: 12 PWIL 1
Score = 28.6 bits (56), Expect(2) = 1e-022
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 375 AAEAVEGAALSLERVDDIH 431
A++AV+ +ALS + VDDIH
Sbjct: 235 ASKAVKSSALSFQGVDDIH 179
>gb|AW697623.1|AW697623 ST64F01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST64F01, mRNA sequence
Length = 393
Score = 166 bits (357), Expect = 2e-040
Identities = 73/78 (93%), Positives = 73/78 (93%)
Frame = -1 / +1
Query: 620 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 441
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA RKT
Sbjct: 151 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAXRKT 330
Query: 440 VTAMDVVYALKRQGRTLY 387
VTAMDVVYALK G LY
Sbjct: 331 VTAMDVVYALKXXGXXLY 384
Score = 118 bits (252), Expect(2) = 1e-027
Identities = 56/68 (82%), Positives = 60/68 (88%)
Frame = +1 / -2
Query: 409 LSA*TTSMAVTVLRRACSV*VTASRMTFSRKILSTPRVSS*MSPEMRLTPPLLASLRIAG 588
LSA*TTSMAVTVLR ACSV*VTAS +TFSRKI +TP VSS*MSP MRLTPPLLA +AG
Sbjct: 362 LSA*TTSMAVTVLRXACSV*VTASLITFSRKIFNTPLVSS*MSPLMRLTPPLLARRLMAG 183
Query: 589 LVMPWMLS 612
LV+PWMLS
Sbjct: 182 LVIPWMLS 159
Score = 24.9 bits (48), Expect(2) = 1e-027
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3 / -1
Query: 384 AVEGAALSLERVDDIH 431
A+E A LER+D IH
Sbjct: 387 AIEXXAXXLERIDXIH 340
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 320,097,744
Number of Sequences: 355925
Number of extensions: 4144222
Number of successful extensions: 158081
Number of sequences better than 1.0e-020: 89
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10837446645
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)