TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.5
(545 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 88... 103 9e-022
gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip libra... 103 9e-022
gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clon... 103 9e-022
gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clon... 103 9e-022
gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clon... 103 9e-022
gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciat... 103 9e-022
gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciat... 103 9e-022
gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciat... 103 9e-022
gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciat... 103 9e-022
gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciat... 103 9e-022
gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciat... 103 9e-022
gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciat... 103 9e-022
gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compr... 103 9e-022
gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compr... 103 9e-022
gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side ... 103 9e-022
gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side ... 103 9e-022
gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side ... 103 9e-022
gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root ... 103 9e-022
gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root ... 103 9e-022
gb|BM493839.1|BM493839 NXLV_070_C06_F NXLV (Nsf Xylem Late ... 103 9e-022
gb|BQ197167.1|BQ197167 NXLV110_C11_F NXLV (Nsf Xylem Late w... 103 9e-022
gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side ... 103 9e-022
gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciat... 103 9e-022
gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clon... 103 9e-022
gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo lib... 103 9e-022
gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo lib... 103 9e-022
gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root ... 102 2e-021
gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo li... 101 3e-021
gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo lib... 100 6e-021
gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo lib... 100 6e-021
gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo lib... 100 6e-021
gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo lib... 100 6e-021
>gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 8831M 3', mRNA sequence
Length = 451
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 37 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 177
>gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36G02, mRNA sequence
Length = 556
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 60 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 200
>gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clone AS05C09 similar to RP L29,
mRNA sequence
Length = 192
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 41 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clone AS05D06 similar to RP L29,
mRNA sequence
Length = 525
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 41 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clone RN02E01 similar to RP L29,
mRNA sequence
Length = 506
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 49 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038E10 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 418
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 49 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077D12 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 49 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079F06, mRNA sequence
Length = 543
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 47 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085G02 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 526
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 47 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093G10, mRNA sequence
Length = 523
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 41 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098E06 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 47 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005B03 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 571
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 49 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_E06 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 519
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 24 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 164
>gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_151_B08 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 308
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 24 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 164
>gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_B08 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 42 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_A02 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 42 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_B12 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 54 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 194
>gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B01 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 376
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 52 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B07 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 52 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|BM493839.1|BM493839 NXLV_070_C06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_070_C06 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 600
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 78 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 218
>gb|BQ197167.1|BQ197167 NXLV110_C11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV110_C11 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 640
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 99 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 239
>gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_111_E05 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 42 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114H10 similar to 60S ribosomal protein L29,
mRNA sequence
Length = 563
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 51 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 191
>gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clone RN33A11, mRNA sequence
Length = 523
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 116 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 256
>gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAF47, mRNA sequence
Length = 394
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 71 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB75, mRNA sequence
Length = 399
Score = 103 bits (220), Expect = 9e-022
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / -1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 324 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 184
>gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_028_B03 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 102 bits (217), Expect = 2e-021
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHN+S+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 52 MAKSKNHTAHNESYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI65 3' end, mRNA sequence
Length = 571
Score = 101 bits (216), Expect = 3e-021
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = -1 / +1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 67 MAKSKNHTAHNQSHKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 207
>gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAD96, mRNA sequence
Length = 403
Score = 100 bits (214), Expect = 6e-021
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK++R TS KGMDPKFLRN RY+R
Sbjct: 80 MAKSKNHTAHNQSYKNHKNGIKKPKKYRHTSRKGMDPKFLRNQRYAR 220
>gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACQ17, mRNA sequence
Length = 394
Score = 100 bits (214), Expect = 6e-021
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTA+NQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 71 MAKSKNHTAYNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA52, mRNA sequence
Length = 394
Score = 100 bits (214), Expect = 6e-021
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTAHNQS+K HKNGIKKPK++R TS KGMDPKFLRN RY+R
Sbjct: 71 MAKSKNHTAHNQSYKNHKNGIKKPKKYRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADD68, mRNA sequence
Length = 393
Score = 100 bits (214), Expect = 6e-021
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -1 / -1
Query: 425 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
MAKSKNHTA+NQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 324 MAKSKNHTAYNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 184
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 245,049,371
Number of Sequences: 355925
Number of extensions: 3039424
Number of successful extensions: 39086
Number of sequences better than 1.0e-020: 46
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7055564100
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)