TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.628
(1238 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed... 203 2e-051
gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 ... 203 2e-051
gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus ad... 203 2e-051
gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus adde... 203 2e-051
gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus ph... 203 2e-051
gb|AW754529.1|AW754529 PC03C03 Pine TriplEx pollen cone lib... 199 3e-050
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 198 7e-050
gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciat... 197 1e-049
gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip libra... 197 2e-049
gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine r... 197 2e-049
gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus pota... 197 2e-049
gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus pota... 197 2e-049
gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus ad... 197 2e-049
gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus... 197 2e-049
gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C fo... 197 2e-049
gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus adde... 197 2e-049
gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip libra... 196 2e-049
gb|BF778071.1|BF778071 NXSI_081_F02_F NXSI (Nsf Xylem Side ... 196 2e-049
gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control ... 195 4e-049
gb|AW043255.1|AW043255 ST31B10 Pine TriplEx shoot tip libra... 194 8e-049
gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control ... 194 8e-049
gb|AW042889.1|AW042889 ST26F06 Pine TriplEx shoot tip libra... 186 3e-046
gb|BE662331.1|BE662331 ST84/ST84F09 Pine TriplEx shoot tip ... 183 2e-045
gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip libra... 182 4e-045
gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo li... 144 1e-044
gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo li... 144 1e-044
gb|BG040859.1|BG040859 NXSI_116_A03_F NXSI (Nsf Xylem Side ... 180 2e-044
gb|AW010325.1|AW010325 ST04G01 Pine TriplEx shoot tip libra... 173 3e-042
gb|BM158718.1|BM158718 NXLV_039_C04_F NXLV (Nsf Xylem Late ... 169 4e-041
gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late ... 169 4e-041
gb|AW587778.1|AW587778 ST66G08 Pine TriplEx shoot tip libra... 165 8e-040
gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stresse... 159 5e-038
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 155 6e-037
gb|AW010688.1|AW010688 ST11A05 Pine TriplEx shoot tip libra... 139 1e-032
gb|BF777977.1|BF777977 NXSI_079_E05_F NXSI (Nsf Xylem Side ... 138 8e-032
gb|AW010529.1|AW010529 ST07H02 Pine TriplEx shoot tip libra... 121 2e-029
gb|BF609920.1|BF609920 NXSI_052_E11_F NXSI (Nsf Xylem Side ... 127 1e-028
gb|BQ700939.1|BQ700939 NXRV113_D09_F NXRV (Nsf Xylem Root w... 127 2e-028
gb|AW011371.1|AW011371 ST20A03 Pine TriplEx shoot tip libra... 61 2e-028
gb|AW056655.1|AW056655 ST54C03 Pine TriplEx shoot tip libra... 126 4e-028
gb|AW226271.1|AW226271 ST80D09 Pine TriplEx shoot tip libra... 126 4e-028
gb|AW056809.1|AW056809 ST56D12 Pine TriplEx shoot tip libra... 125 8e-028
gb|CO175700.1|CO175700 NDL1_56_A03.g1_A029 Needles control ... 124 1e-027
gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropis... 119 5e-026
gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clon... 111 1e-023
gb|AW226329.1|AW226329 ST81B04 Pine TriplEx shoot tip libra... 106 3e-022
gb|AW437935.1|AW437935 ST78E07 Pine TriplEx shoot tip libra... 105 7e-022
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 105 7e-022
>gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_D04_A015 5', mRNA sequence
Length = 695
Score = 203 bits (438), Expect = 2e-051
Identities = 81/98 (82%), Positives = 85/98 (86%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 170 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQ 349
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 350 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 463
>gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 5', mRNA sequence
Length = 479
Score = 203 bits (438), Expect = 2e-051
Identities = 81/98 (82%), Positives = 85/98 (86%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 102 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQ 281
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 282 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 395
>gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 3', mRNA sequence
Length = 677
Score = 203 bits (438), Expect = 2e-051
Identities = 81/98 (82%), Positives = 85/98 (86%)
Frame = -2 / -2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 538 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQ 359
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 358 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 245
>gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_27_C09_A029 3', mRNA sequence
Length = 634
Score = 203 bits (438), Expect = 2e-051
Identities = 81/98 (82%), Positives = 85/98 (86%)
Frame = -2 / -2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 525 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQ 346
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 345 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 232
>gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_4_D06_A029 3', mRNA sequence
Length = 681
Score = 203 bits (438), Expect = 2e-051
Identities = 81/98 (82%), Positives = 85/98 (86%)
Frame = -2 / -2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 563 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQ 384
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 383 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 270
>gb|AW754529.1|AW754529 PC03C03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03C03, mRNA sequence
Length = 494
Score = 199 bits (430), Expect = 3e-050
Identities = 80/98 (81%), Positives = 84/98 (85%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D R +AISAE+PEF+NKDKTLVLQFSVKHEQ
Sbjct: 156 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARSFAISAEFPEFNNKDKTLVLQFSVKHEQ 335
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 336 KLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 449
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 198 bits (427), Expect = 7e-050
Identities = 77/98 (78%), Positives = 84/98 (85%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ TSGKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 156 KDESLAGDWVHTSGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 335
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 336 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 449
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 41/74 (55%), Positives = 43/74 (58%)
Frame = +3 / -3
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP+V SPA SS
Sbjct: 337 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPDVCTQSPAKLSS 158
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 157 FFQSDCTQRLSQLS 116
Score = 37.3 bits (75), Expect(2) = 4e-021
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L VSP FFW
Sbjct: 445 PQMSGPNIILYGVSPLKFFW 386
>gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104C10, mRNA sequence
Length = 672
Score = 197 bits (425), Expect = 1e-049
Identities = 77/98 (78%), Positives = 84/98 (85%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 145 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 324
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G+VDQK F G+T YSIMFGPDICGY
Sbjct: 325 KLDCGGGYVKLLSGEVDQKNFSGETPYSIMFGPDICGY 438
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 326 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 147
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 146 FFQSDCTQRLSQLS 105
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 434 PQMSGPNIIL*GVSPLKFFW 375
>gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H08, mRNA sequence
Length = 601
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 173 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 352
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 353 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 466
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 354 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 175
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 174 FFQSDCTQRLSQLS 133
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 462 PQMSGPNIIL*GVSPLKFFW 403
>gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_12_D12_A021 5', mRNA
sequence
Length = 675
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 117 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 296
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 297 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 410
>gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_E10_A029 3', mRNA sequence
Length = 839
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / -3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 708 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 529
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 528 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 415
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / +2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 527 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 706
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 707 FFQSDCTQRLSQLS 748
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / +2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 419 PQMSGPNIIL*GVSPLKFFW 478
>gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 3', mRNA sequence
Length = 767
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / -2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 631 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 452
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 451 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 338
>gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 5', mRNA sequence
Length = 633
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 121 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 300
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 301 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 414
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 302 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 123
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 122 FFQSDCTQRLSQLS 81
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 410 PQMSGPNIIL*GVSPLKFFW 351
>gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 3', mRNA sequence
Length = 851
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / -1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 713 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 534
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 533 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 420
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / +1
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 532 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 711
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 712 FFQSDCTQRLSQLS 753
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / +1
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 424 PQMSGPNIIL*GVSPLKFFW 483
>gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 3', mRNA sequence
Length = 855
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / -1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 714 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 535
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 534 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 421
>gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_22_H09_A029 5', mRNA sequence
Length = 762
Score = 197 bits (424), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 131 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 310
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 311 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 424
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -1
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 312 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 133
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 132 FFQSDCTQRLSQLS 91
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -1
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 420 PQMSGPNIIL*GVSPLKFFW 361
>gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32B12, mRNA sequence
Length = 600
Score = 196 bits (423), Expect = 2e-049
Identities = 76/98 (77%), Positives = 84/98 (85%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 173 KDESLAGDWVHTAGKWNGDPNDKGIQTLTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 352
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 353 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 466
Score = 84.5 bits (178), Expect(2) = 1e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -1
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 354 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVSVWMPLSFGSPFHFPAVCTQSPAKLSS 175
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 174 FFQSDCTQRLSQLS 133
Score = 39.6 bits (80), Expect(2) = 1e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -1
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 462 PQMSGPNIIL*GVSPLKFFW 403
>gb|BF778071.1|BF778071 NXSI_081_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_F02 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 430
Score = 196 bits (423), Expect = 2e-049
Identities = 78/93 (83%), Positives = 82/93 (88%)
Frame = -2 / +2
Query: 1120 AGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCG 941
AGE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKHEQKLDCG
Sbjct: 5 AGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCG 184
Query: 940 GGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
GGYVKLL GDVDQKKFGGDT YSIMFGPDICGY
Sbjct: 185 GGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGY 283
>gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 5', mRNA sequence
Length = 651
Score = 195 bits (421), Expect = 4e-049
Identities = 75/98 (76%), Positives = 84/98 (85%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 124 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 303
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGY+KLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 304 KLDCGGGYLKLLSGEIDQKNFSGETPYSIMFGPDICGY 417
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 305 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 126
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 125 FFQSDCTQRLSQLS 84
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 413 PQMSGPNIIL*GVSPLKFFW 354
>gb|AW043255.1|AW043255 ST31B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST31B10, mRNA sequence
Length = 601
Score = 194 bits (419), Expect = 8e-049
Identities = 75/98 (76%), Positives = 84/98 (85%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 166 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 345
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGP+ICGY
Sbjct: 346 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPNICGY 459
Score = 83.5 bits (176), Expect(2) = 9e-022
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -3
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 347 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVCVWMPLSFGSPFHFPAVCTQSPAKLSS 168
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 167 FFQSDCTQRLSQLS 126
Score = 40.9 bits (83), Expect(2) = 9e-022
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3 / -3
Query: 840 MYPQISGPNIML*DVSPPNFFW 905
+YPQ+ GPNI+L* VSP FFW
Sbjct: 461 LYPQMFGPNIIL*GVSPLKFFW 396
>gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 3', mRNA sequence
Length = 570
Score = 194 bits (419), Expect = 8e-049
Identities = 75/98 (76%), Positives = 83/98 (84%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD D GI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 49 KDESLAGDRVHTAGKWNGDPNDMGIQTRTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 228
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 229 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 342
Score = 84.0 bits (177), Expect(2) = 2e-021
Identities = 41/74 (55%), Positives = 42/74 (56%)
Frame = +3 / -2
Query: 954 FCSCFTENCSTRVLSLLLNSGYSAEMA*NL*XXXXXXXXXXXXPFHFPEVXXXSPAMFSS 1133
FCSC TEN TRVLSLLLNSGY+AEMA NL* PFHFP V SPA SS
Sbjct: 230 FCSCLTEN*RTRVLSLLLNSGYAAEMAKNL*SVRVWMPMSFGSPFHFPAVCTRSPAKLSS 51
Query: 1134 FXXSXXXXXXXQXS 1175
F S Q S
Sbjct: 50 FFRSDCTQRLSQLS 9
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 846 PQISGPNIML*DVSPPNFFW 905
PQ+SGPNI+L* VSP FFW
Sbjct: 338 PQMSGPNIIL*GVSPLKFFW 279
>gb|AW042889.1|AW042889 ST26F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26F06, mRNA sequence
Length = 549
Score = 186 bits (401), Expect = 3e-046
Identities = 72/98 (73%), Positives = 81/98 (82%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVL FSVKHEQ
Sbjct: 172 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLXFSVKHEQ 351
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKL G++D K F G+T YSIMFGP+ICGY
Sbjct: 352 KLDCGGGYVKLXSGEIDXKNFXGETPYSIMFGPNICGY 465
>gb|BE662331.1|BE662331 ST84/ST84F09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84F09, mRNA sequence
Length = 519
Score = 183 bits (395), Expect = 2e-045
Identities = 72/96 (75%), Positives = 80/96 (83%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 340
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDIC 848
KLDCGGGYVKLL G++DQK F G+T YSIMF DIC
Sbjct: 341 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFXXDIC 448
>gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23A07, mRNA sequence
Length = 573
Score = 182 bits (392), Expect = 4e-045
Identities = 71/93 (76%), Positives = 79/93 (84%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 340
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGP 857
KLDCGGGYVKLL G++DQK F G+T YSIMFGP
Sbjct: 341 KLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGP 439
>gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF110 3' end, mRNA sequence
Length = 828
Score = 144 bits (309), Expect(2) = 1e-044
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = -2 / +2
Query: 1039 FYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFG 860
F+AISA YPEFSNKDKT VLQFSVKHEQKLDCGGGYVKLL G++DQK F G+T YSIMFG
Sbjct: 266 FFAISAAYPEFSNKDKTPVLQFSVKHEQKLDCGGGYVKLLSGEIDQKNFSGETPYSIMFG 445
Query: 859 PDICGY 842
PDICGY
Sbjct: 446 PDICGY 463
Score = 56.5 bits (117), Expect(2) = 1e-044
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFY 1034
KDE++AG+ T+GKWNGD DKGI DYRF+
Sbjct: 169 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFF 270
>gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA847 3' end, mRNA sequence
Length = 725
Score = 144 bits (309), Expect(2) = 1e-044
Identities = 56/66 (84%), Positives = 60/66 (90%)
Frame = -2 / +3
Query: 1039 FYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFG 860
F+AISA YPEFSNKDKT VLQFSVKHEQKLDCGGGYVKLL G++DQK F G+T YSIMFG
Sbjct: 258 FFAISAAYPEFSNKDKTPVLQFSVKHEQKLDCGGGYVKLLSGEIDQKNFSGETPYSIMFG 437
Query: 859 PDICGY 842
PDICGY
Sbjct: 438 PDICGY 455
Score = 56.5 bits (117), Expect(2) = 1e-044
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFY 1034
KDE++AG+ T+GKWNGD DKGI DYRF+
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFF 262
>gb|BG040859.1|BG040859 NXSI_116_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_116_A03 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 427
Score = 180 bits (387), Expect = 2e-044
Identities = 74/98 (75%), Positives = 77/98 (78%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE AGE T+GKWNGD EDKGI D RF+AISA P F+NKDKTLVLQFSVKHEQ
Sbjct: 123 KDEGAAGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAXXPXFNNKDKTLVLQFSVKHEQ 302
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
KLDCGGGYVKLL GDVDQK FGGDT YSI DICGY
Sbjct: 303 KLDCGGGYVKLLSGDVDQKXFGGDTPYSIXXXXDICGY 416
>gb|AW010325.1|AW010325 ST04G01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST04G01, mRNA sequence
Length = 775
Score = 173 bits (372), Expect = 3e-042
Identities = 68/92 (73%), Positives = 76/92 (82%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFS KDKTLVLQFSVKHEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSXKDKTLVLQFSVKHEQ 340
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFG 860
KLDCGGGYVKLL G++D K F G+T YSIMFG
Sbjct: 341 KLDCGGGYVKLLSGEIDXKNFSGETPYSIMFG 436
>gb|BM158718.1|BM158718 NXLV_039_C04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_C04 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 523
Score = 169 bits (363), Expect = 4e-041
Identities = 66/81 (81%), Positives = 70/81 (86%)
Frame = -2 / +2
Query: 1084 GDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVD 905
GD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLL G++D
Sbjct: 17 GDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGEID 196
Query: 904 QKKFGGDTSYSIMFGPDICGY 842
QK F G+T YSIMFGPDICGY
Sbjct: 197 QKNFSGETPYSIMFGPDICGY 259
>gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_C05 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 524
Score = 169 bits (363), Expect = 4e-041
Identities = 66/81 (81%), Positives = 70/81 (86%)
Frame = -2 / +2
Query: 1084 GDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVD 905
GD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLL G++D
Sbjct: 17 GDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGEID 196
Query: 904 QKKFGGDTSYSIMFGPDICGY 842
QK F G+T YSIMFGPDICGY
Sbjct: 197 QKNFSGETPYSIMFGPDICGY 259
>gb|AW587778.1|AW587778 ST66G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66G08, mRNA sequence
Length = 460
Score = 165 bits (354), Expect = 8e-040
Identities = 66/96 (68%), Positives = 73/96 (76%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 158 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQ 337
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDIC 848
KLDCGGGYVKL G+ QK F G+T Y M IC
Sbjct: 338 KLDCGGGYVKLXXGEXXQKNFSGETPYRXMXXXXIC 445
>gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_H06_A021 5', mRNA sequence
Length = 752
Score = 159 bits (341), Expect = 5e-038
Identities = 62/75 (82%), Positives = 66/75 (88%)
Frame = -2 / +1
Query: 1066 GIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGG 887
GI DYRF+AISA YPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLL G++DQK F G
Sbjct: 88 GIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGEIDQKNFSG 267
Query: 886 DTSYSIMFGPDICGY 842
+T YSIMFGPDICGY
Sbjct: 268 ETPYSIMFGPDICGY 312
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 155 bits (333), Expect = 6e-037
Identities = 59/69 (85%), Positives = 64/69 (92%)
Frame = -2 / +1
Query: 1048 DYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSI 869
DYRF+AISA YPEFSNKDKTLVLQFSVKHEQKLDCGGGY+KLL G++DQK F G+T YSI
Sbjct: 40 DYRFFAISAAYPEFSNKDKTLVLQFSVKHEQKLDCGGGYIKLLSGEIDQKNFSGETPYSI 219
Query: 868 MFGPDICGY 842
MFGPDICGY
Sbjct: 220 MFGPDICGY 246
>gb|AW010688.1|AW010688 ST11A05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST11A05, mRNA sequence
Length = 483
Score = 139 bits (298), Expect(3) = 1e-032
Identities = 54/72 (75%), Positives = 61/72 (84%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AIS YPEFSNKDKTLVLQFSVKHEQ
Sbjct: 169 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISTAYPEFSNKDKTLVLQFSVKHEQ 348
Query: 955 KLDCGGGYVKLL 920
KLDCGGGYVK++
Sbjct: 349 KLDCGGGYVKVV 384
Score = 21.7 bits (41), Expect(3) = 1e-032
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +3
Query: 877 YSIMFGPD 854
Y IMFGPD
Sbjct: 429 YXIMFGPD 452
Score = 21.7 bits (41), Expect(3) = 1e-032
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2 / +2
Query: 928 KLLGGDVDQKKFGGDT 881
KLL G++ F G+T
Sbjct: 377 KLLSGEIXXNNFNGET 424
>gb|BF777977.1|BF777977 NXSI_079_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_E05 5' similar to Arabidopsis thaliana
sequence At1g08450 calreticulin like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 465
Score = 138 bits (296), Expect = 8e-032
Identities = 55/95 (57%), Positives = 68/95 (71%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
+ E AG T+GKW GD +DKGI D R +AISA+ PEF+NK +TLVLQ+S+K EQ
Sbjct: 164 RSEGTAGSFKHTAGKWAGDHDDKGIQTYPDARHFAISAKIPEFNNKXRTLVLQYSIKFEQ 343
Query: 955 KLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDI 851
++CGGGY+KLL G +QKKF DT Y MFGPDI
Sbjct: 344 DIECGGGYIKLLXGYXNQKKFXXDTPYXXMFGPDI 448
>gb|AW010529.1|AW010529 ST07H02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07H02, mRNA sequence
Length = 763
Score = 121 bits (259), Expect(2) = 2e-029
Identities = 49/70 (70%), Positives = 54/70 (77%)
Frame = -2 / +3
Query: 1096 GKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLG 917
G G +GI DYRF+AISA YPEF+NK KTLVLQFSVKHEQKLDCGGGYVKLL
Sbjct: 243 GNGTGIQMTRGIQTHTDYRFFAISAAYPEFNNKXKTLVLQFSVKHEQKLDCGGGYVKLLS 422
Query: 916 GDVDQKKFGG 887
G++DQK F G
Sbjct: 423 GEIDQKNFSG 452
Score = 28.6 bits (56), Expect(2) = 2e-029
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2 / +1
Query: 889 GDTSYSIMFGPDICGY 842
G+T Y GP+ICGY
Sbjct: 451 GETPYKYYVGPNICGY 498
>gb|BF609920.1|BF609920 NXSI_052_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_052_E11 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 346
Score = 127 bits (273), Expect = 1e-028
Identities = 51/69 (73%), Positives = 55/69 (79%)
Frame = -2 / +1
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE GE T+GKWNGD EDKGI D RF+AISAE+PEF+NKDKTLVLQFSVKH
Sbjct: 130 KDEGAXGEWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHXX 309
Query: 955 KLDCGGGYV 929
KLDCGGGYV
Sbjct: 310 KLDCGGGYV 336
>gb|BQ700939.1|BQ700939 NXRV113_D09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV113_D09 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 370
Score = 127 bits (272), Expect = 2e-028
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -2 / +1
Query: 1090 WNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGD 911
WNGD DKGI DYRF+AISA YPEFSNKDKTLVLQFSVKH+QKLDCGGGYVKLL GD
Sbjct: 190 WNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLQFSVKHQQKLDCGGGYVKLLXGD 369
>gb|AW011371.1|AW011371 ST20A03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20A03, mRNA sequence
Length = 549
Score = 61.1 bits (127), Expect(5) = 2e-028
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = -2 / +3
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYP 1013
KDE++AG+ +GKWNGD DKGI DYRF+AIS+ P
Sbjct: 225 KDESLAGDWVHAAGKWNGDPNDKGIQTHTDYRFFAISSCVP 347
Score = 42.8 bits (87), Expect(5) = 2e-028
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 994 KTLVLQFSVKHEQKLDCGGGYVKLL 920
+ L +FSVKHEQKLDCGGG K++
Sbjct: 368 RPLFFKFSVKHEQKLDCGGGLRKVV 442
Score = 38.6 bits (78), Expect(5) = 2e-028
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 1039 FYAISAEYPEFSNKDKTLVLQ 977
F A YPEFSNKDKTLVLQ
Sbjct: 322 FLPSQAAYPEFSNKDKTLVLQ 384
Score = 28.1 bits (55), Expect(5) = 2e-028
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2 / +3
Query: 913 DVDQKKFGGDTSYSIMFGPDICGY 842
D ++ G DT + GPDICGY
Sbjct: 456 DQERISSGRDTL*VLCLGPDICGY 527
Score = 28.1 bits (55), Expect(5) = 2e-028
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2 / +3
Query: 937 GYVKLLGGDVDQKK 896
GYVKLL G++DQ++
Sbjct: 426 GYVKLLSGEIDQER 467
>gb|AW056655.1|AW056655 ST54C03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54C03, mRNA sequence
Length = 390
Score = 126 bits (269), Expect = 4e-028
Identities = 51/75 (68%), Positives = 57/75 (76%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTLVL FSVKHEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLVLXFSVKHEQ 340
Query: 955 KLDCGGGYVKLLGGD 911
KLD G Y L G+
Sbjct: 341 KLDXXGXYXXXLSGE 385
>gb|AW226271.1|AW226271 ST80D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST80D09, mRNA sequence
Length = 380
Score = 126 bits (269), Expect = 4e-028
Identities = 50/69 (72%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFS KDKTLVL FSV HEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSXKDKTLVLXFSVXHEQ 340
Query: 955 KLDCGGGYV 929
KLDCGG YV
Sbjct: 341 KLDCGGXYV 367
>gb|AW056809.1|AW056809 ST56D12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST56D12, mRNA sequence
Length = 389
Score = 125 bits (267), Expect = 8e-028
Identities = 50/76 (65%), Positives = 57/76 (75%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFS +DK LVLQFSVKHEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSXQDKXLVLQFSVKHEQ 340
Query: 955 KLDCGGGYVKLLGGDV 908
KLDCGG LL +
Sbjct: 341 KLDCGGXXXXLLSXXI 388
>gb|CO175700.1|CO175700 NDL1_56_A03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_56_A03_A029 5', mRNA sequence
Length = 758
Score = 124 bits (265), Expect = 1e-027
Identities = 47/68 (69%), Positives = 58/68 (85%)
Frame = -2 / +1
Query: 1048 DYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSI 869
D R +AISA+ PEF+NK +TLVLQ+S+K EQ ++CGGGY+KLL G V+QKKF GDT YS+
Sbjct: 7 DARHFAISAKIPEFNNKGRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFSGDTPYSV 186
Query: 868 MFGPDICG 845
MFGPDICG
Sbjct: 187 MFGPDICG 210
>gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_E10_A029 5', mRNA sequence
Length = 800
Score = 119 bits (254), Expect = 5e-026
Identities = 44/64 (68%), Positives = 56/64 (87%)
Frame = -2 / +1
Query: 1036 YAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGP 857
+AISA+ PEF+NK +T+VLQ+S+K EQ ++CGGGY+KLL G V+QKKF GDT YS+MFGP
Sbjct: 1 FAISAKIPEFNNKGRTVVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFSGDTPYSVMFGP 180
Query: 856 DICG 845
DICG
Sbjct: 181 DICG 192
>gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clone RN06A11 similar to
CALRETICULIN, mRNA sequence
Length = 676
Score = 111 bits (237), Expect = 1e-023
Identities = 43/49 (87%), Positives = 45/49 (91%)
Frame = -2 / +2
Query: 988 LVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
LVLQFSVKHEQKLDCGGGYVKLL G+VDQK F G+T YSIMFGPDICGY
Sbjct: 2 LVLQFSVKHEQKLDCGGGYVKLLSGEVDQKNFSGETPYSIMFGPDICGY 148
>gb|AW226329.1|AW226329 ST81B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST81B04, mRNA sequence
Length = 344
Score = 106 bits (226), Expect = 3e-022
Identities = 42/61 (68%), Positives = 47/61 (77%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AIS YPEFSN DK LVLQFSV HEQ
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISXAYPEFSNXDKXLVLQFSVXHEQ 340
Query: 955 K 953
K
Sbjct: 341 K 343
>gb|AW437935.1|AW437935 ST78E07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78E07, mRNA sequence
Length = 351
Score = 105 bits (224), Expect = 7e-022
Identities = 42/63 (66%), Positives = 47/63 (74%)
Frame = -2 / +2
Query: 1135 KDENMAGEXXXTSGKWNGDAEDKGIXXSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQ 956
KDE++AG+ T+GKWNGD DKGI DYRF+AISA YPEFSNKDKTL LQFS HE
Sbjct: 161 KDESLAGDWVHTAGKWNGDPNDKGIQTHTDYRFFAISAAYPEFSNKDKTLXLQFSXXHEX 340
Query: 955 KLD 947
D
Sbjct: 341 XXD 349
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 105 bits (224), Expect = 7e-022
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = -2 / -2
Query: 979 QFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTSYSIMFGPDICGY 842
QFSVKHEQKLDCGGGYVKLL G++DQK F G+T YSIMFGPDICGY
Sbjct: 796 QFSVKHEQKLDCGGGYVKLLSGEIDQKNFSGETPYSIMFGPDICGY 659
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 631,761,168
Number of Sequences: 355925
Number of extensions: 9707237
Number of successful extensions: 59178
Number of sequences better than 1.0e-020: 73
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 19228657480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)