TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.458
(708 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX251621.1|BX251621 BX251621 Pinus pinaster differenciat... 234 4e-061
gb|BX252635.1|BX252635 BX252635 Pinus pinaster differenciat... 234 4e-061
gb|BX252831.1|BX252831 BX252831 Pinus pinaster differenciat... 234 4e-061
gb|BX253491.1|BX253491 BX253491 Pinus pinaster differenciat... 234 4e-061
gb|BX254291.1|BX254291 BX254291 Pinus pinaster differenciat... 234 4e-061
gb|BX254434.1|BX254434 BX254434 Pinus pinaster differenciat... 234 4e-061
gb|BX676879.1|BX676879 BX676879 RN Pinus pinaster cDNA clon... 234 4e-061
gb|BQ702520.1|BQ702520 NXSI_129_E08_F NXSI (Nsf Xylem Side ... 233 8e-061
gb|CF396144.1|CF396144 RTDS2_13_G06.g1_A021 Drought-stresse... 233 8e-061
gb|CO169111.1|CO169111 NDL1_4_F02.g1_A029 Needles control P... 233 8e-061
gb|CO170769.1|CO170769 NDL1_16_F07.g1_A029 Needles control ... 233 8e-061
gb|CO176729.1|CO176729 NDL1_63_G05.g1_A029 Needles control ... 233 8e-061
gb|CX714676.1|CX714676 RTPQ1_24_D12.g1_A032 Roots treated w... 233 8e-061
gb|DR048627.1|DR048627 RTBOR1_10_D09.b1_A029 Roots plus add... 233 8e-061
gb|DR054710.1|DR054710 RTCA1_19_B11.b1_A029 Roots minus cal... 233 8e-061
gb|DR054779.1|DR054779 RTCA1_19_B11.g1_A029 Roots minus cal... 233 8e-061
gb|DR117417.1|DR117417 RTMG1_6_G08.g1_A029 Roots minus magn... 233 8e-061
gb|AW289494.1|AW289494 NXNV001C06F Nsf Xylem Normal wood Ve... 233 1e-060
gb|CD028033.1|CD028033 NXNV001C06 Nsf Xylem Normal wood Ver... 233 1e-060
gb|AW043129.1|AW043129 ST29F11 Pine TriplEx shoot tip libra... 232 2e-060
gb|BE496435.1|BE496435 NXCI_018_A11_F NXCI (Nsf Xylem Compr... 230 1e-059
gb|DR020445.1|DR020445 STRS1_37_B12.b1_A034 Shoot tip pitch... 230 1e-059
gb|DR020520.1|DR020520 STRS1_37_B12.g1_A034 Shoot tip pitch... 230 1e-059
gb|DR743849.1|DR743849 RTCU1_18_B12.g1_A029 Roots plus adde... 230 1e-059
gb|DR744299.1|DR744299 RTCU1_21_C02.g1_A029 Roots plus adde... 230 1e-059
gb|AW981545.1|AW981545 PC13H05 Pine TriplEx pollen cone lib... 227 7e-059
gb|BQ703030.1|BQ703030 NXSI_135_F07_F NXSI (Nsf Xylem Side ... 213 9e-055
gb|BE761889.1|BE761889 NXCI_071_B07_F NXCI (Nsf Xylem Compr... 212 2e-054
gb|BF777568.1|BF777568 NXSI_070_A11_F NXSI (Nsf Xylem Side ... 201 5e-051
gb|BF610418.1|BF610418 NXSI_058_B09_F NXSI (Nsf Xylem Side ... 191 4e-048
gb|CX646028.1|CX646028 COLD1_6_G06.g1_A029 Root cold Pinus ... 189 1e-047
gb|AW225892.1|AW225892 ST72H10 Pine TriplEx shoot tip libra... 185 3e-046
gb|CX647783.1|CX647783 COLD1_20_E01.b1_A029 Root cold Pinus... 185 3e-046
gb|BF221323.1|BF221323 NXCI_157_D05_F NXCI (Nsf Xylem Compr... 183 9e-046
gb|BE996989.1|BE996989 NXCI_093_H03_F NXCI (Nsf Xylem Compr... 173 9e-043
gb|BF169412.1|BF169412 NXCI_120_F12_F NXCI (Nsf Xylem Compr... 173 1e-042
gb|BF517723.1|BF517723 NXSI_027_D10_F NXSI (Nsf Xylem Side ... 170 1e-041
gb|BE241265.1|BE241265 NXNV_183_F03_F Nsf Xylem Normal wood... 164 5e-040
gb|BE662414.1|BE662414 ST84/ST84H03 Pine TriplEx shoot tip ... 164 7e-040
gb|BF777579.1|BF777579 NXSI_070_B10_F NXSI (Nsf Xylem Side ... 162 2e-039
gb|AA557016.1|AA557016 858 Loblolly pine N Pinus taeda cDNA... 148 4e-035
gb|CO169034.1|CO169034 NDL1_4_F02.b1_A029 Needles control P... 147 7e-035
gb|BX678167.1|BX678167 BX678167 RN Pinus pinaster cDNA clon... 146 1e-034
gb|DR389038.1|DR389038 RTHG1_32_B10.b1_A029 Roots plus adde... 101 6e-034
gb|BX252657.1|BX252657 BX252657 Pinus pinaster differenciat... 136 1e-031
gb|BX254564.1|BX254564 BX254564 Pinus pinaster differenciat... 136 2e-031
gb|BF186376.1|BF186376 NXCI_141_D04_F NXCI (Nsf Xylem Compr... 130 1e-029
gb|DR385336.1|DR385336 RTHG1_8_C03.b1_A029 Roots plus added... 125 3e-028
gb|BX677173.1|BX677173 BX677173 RN Pinus pinaster cDNA clon... 122 3e-027
gb|BM903351.1|BM903351 NXRV_038_E04_F NXRV (Nsf Xylem Root ... 121 7e-027
gb|DR385418.1|DR385418 RTHG1_8_C03.g1_A029 Roots plus added... 116 1e-025
gb|BQ107315.1|BQ107315 NXLV092_B03_F NXLV (Nsf Xylem Late w... 104 2e-025
gb|CR394245.1|CR394245 CR394245 RN Pinus pinaster cDNA clon... 108 4e-023
gb|BQ197160.1|BQ197160 NXLV110_C04_F NXLV (Nsf Xylem Late w... 108 5e-023
gb|BF778979.1|BF778979 NXSI_091_F08_F NXSI (Nsf Xylem Side ... 105 2e-022
gb|BQ107825.1|BQ107825 NXLV101_A01_F NXLV (Nsf Xylem Late w... 105 3e-022
gb|BM158246.1|BM158246 NXLV_031_D04_F NXLV (Nsf Xylem Late ... 105 5e-022
>gb|BX251621.1|BX251621 BX251621 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP053B06 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 713
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 101 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 280
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 281 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 445
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 441 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 262
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 261 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 106
>gb|BX252635.1|BX252635 BX252635 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP068C04 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 681
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 106 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 285
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 286 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 450
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 446 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 267
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 266 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 111
>gb|BX252831.1|BX252831 BX252831 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP071D07 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 694
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 106 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 285
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 286 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 450
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 446 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 267
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 266 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 111
>gb|BX253491.1|BX253491 BX253491 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP084B07 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 695
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 111 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 290
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 291 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 455
Score = 138 bits (296), Expect = 4e-032
Identities = 64/112 (57%), Positives = 74/112 (66%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR T P + * VP *+*AI
Sbjct: 451 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTFPHIHL*LVPPFLVFAL*I*AIL 272
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 271 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 116
>gb|BX254291.1|BX254291 BX254291 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP096C08 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 679
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 47 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 226
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 227 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 391
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 387 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 208
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 207 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 52
>gb|BX254434.1|BX254434 BX254434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098E10 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 695
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 116 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 295
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 296 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 460
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 456 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 277
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 276 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 121
>gb|BX676879.1|BX676879 BX676879 RN Pinus pinaster cDNA clone RN13D02, mRNA sequence
Length = 585
Score = 234 bits (506), Expect = 4e-061
Identities = 93/115 (80%), Positives = 103/115 (89%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKSNQY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 117 INMVKGRQGERIRLYVRGIILGYKRSKSNQYPNTSLIQIEGVNTPEEVDWYLGKRMAYIY 296
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 297 KAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 461
Score = 140 bits (300), Expect = 1e-032
Identities = 65/112 (58%), Positives = 75/112 (66%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCGR TLP + * VP *+*AI
Sbjct: 457 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGRVTLPHIHL*LVPPFLVFAL*I*AIL 278
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y +TSS V TPSI +V YWFD D L PR +PRT +L R P RPFT+
Sbjct: 277 LPRYQSTSSGVLTPSI*IREVFGYWFDFDLL*PRMIPRTYNLIRSPWRPFTM 122
>gb|BQ702520.1|BQ702520 NXSI_129_E08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_E08 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 526
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 104 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 283
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 284 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 460
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 456 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 277
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 276 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 121
>gb|CF396144.1|CF396144 RTDS2_13_G06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_G06_A021 5', mRNA sequence
Length = 795
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / -1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 663 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 484
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 483 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 307
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / +2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 311 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 490
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 491 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 646
>gb|CO169111.1|CO169111 NDL1_4_F02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_4_F02_A029 5', mRNA sequence
Length = 729
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 55 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 234
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 235 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 411
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 407 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 228
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 227 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 72
>gb|CO170769.1|CO170769 NDL1_16_F07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_F07_A029 5', mRNA sequence
Length = 758
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 157 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 336
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 337 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 513
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 509 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 330
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 329 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 174
>gb|CO176729.1|CO176729 NDL1_63_G05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_G05_A029 5', mRNA sequence
Length = 745
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 67 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 246
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 247 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 423
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 419 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 240
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 239 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 84
>gb|CX714676.1|CX714676 RTPQ1_24_D12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_24_D12_A032 5', mRNA sequence
Length = 692
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 76 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 255
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 256 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 432
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 428 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 249
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 248 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 93
>gb|DR048627.1|DR048627 RTBOR1_10_D09.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_D09_A029 3', mRNA sequence
Length = 789
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 99 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 278
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 279 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 455
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 451 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 272
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 271 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 116
>gb|DR054710.1|DR054710 RTCA1_19_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_B11_A029 3', mRNA sequence
Length = 685
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 3 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 182
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 183 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 359
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 355 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 176
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 175 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 20
>gb|DR054779.1|DR054779 RTCA1_19_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_B11_A029 5', mRNA sequence
Length = 697
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 72 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 251
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 252 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 428
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 424 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 245
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 244 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 89
>gb|DR117417.1|DR117417 RTMG1_6_G08.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_G08_A029 5', mRNA sequence
Length = 776
Score = 233 bits (504), Expect = 8e-061
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 77 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 256
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 257 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 433
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 429 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 250
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 249 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 94
>gb|AW289494.1|AW289494 NXNV001C06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV001C06 5', mRNA sequence
Length = 502
Score = 233 bits (503), Expect = 1e-060
Identities = 92/118 (77%), Positives = 104/118 (88%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 81 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 260
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI
Sbjct: 261 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI 434
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 433 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 254
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 253 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 98
>gb|CD028033.1|CD028033 NXNV001C06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV001C06 5' similar to Arabidopsis thaliana sequence
At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 502
Score = 233 bits (503), Expect = 1e-060
Identities = 92/118 (77%), Positives = 104/118 (88%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 81 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 260
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI
Sbjct: 261 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI 434
Score = 134 bits (287), Expect = 7e-031
Identities = 64/112 (57%), Positives = 73/112 (65%)
Frame = -2 / -1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 433 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 254
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 253 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 98
>gb|AW043129.1|AW043129 ST29F11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29F11, mRNA sequence
Length = 601
Score = 232 bits (501), Expect = 2e-060
Identities = 92/119 (77%), Positives = 105/119 (88%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 116 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 295
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
AYIYKAKTK GT+YRCIWG+V RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 296 AYIYKAKTKKGGTNYRCIWGEVTRPHGNSGVVRAKFRTNLPPKSMGXRVRVFMYPSSI* 472
Score = 132 bits (282), Expect = 3e-030
Identities = 63/112 (56%), Positives = 72/112 (64%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG T PQ+ * VP *+*AI
Sbjct: 468 MLLGYINTLTLXPMDFGGKFVLNFALTTPLLPCGLVTSPQIHL*LVPPFLVFAL*I*AIL 289
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 288 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 133
>gb|BE496435.1|BE496435 NXCI_018_A11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_A11 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 230 bits (496), Expect = 1e-059
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 38 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 217
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 218 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 382
Score = 133 bits (286), Expect = 9e-031
Identities = 64/112 (57%), Positives = 72/112 (64%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 378 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 199
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 198 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 43
>gb|DR020445.1|DR020445 STRS1_37_B12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_B12_A034 3', mRNA sequence
Length = 622
Score = 230 bits (496), Expect = 1e-059
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = +1 / +1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 46 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 225
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 226 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 390
Score = 133 bits (286), Expect = 9e-031
Identities = 64/112 (57%), Positives = 72/112 (64%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 386 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 207
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 206 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 51
>gb|DR020520.1|DR020520 STRS1_37_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_B12_A034 5', mRNA sequence
Length = 597
Score = 230 bits (496), Expect = 1e-059
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 15 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 194
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 195 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 359
Score = 133 bits (286), Expect = 9e-031
Identities = 64/112 (57%), Positives = 72/112 (64%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 355 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 176
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 175 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 20
>gb|DR743849.1|DR743849 RTCU1_18_B12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_B12_A029 5', mRNA sequence
Length = 781
Score = 230 bits (496), Expect = 1e-059
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = +1 / -1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 667 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 488
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 487 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 323
Score = 133 bits (286), Expect = 9e-031
Identities = 64/112 (57%), Positives = 72/112 (64%)
Frame = -2 / +3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 327 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 506
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 507 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 662
>gb|DR744299.1|DR744299 RTCU1_21_C02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_C02_A029 5', mRNA sequence
Length = 725
Score = 230 bits (496), Expect = 1e-059
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 24 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 203
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 204 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 368
Score = 133 bits (286), Expect = 9e-031
Identities = 64/112 (57%), Positives = 72/112 (64%)
Frame = -2 / -2
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 364 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 185
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 184 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 29
>gb|AW981545.1|AW981545 PC13H05 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC13H05, mRNA sequence
Length = 596
Score = 227 bits (490), Expect = 7e-059
Identities = 88/113 (77%), Positives = 101/113 (89%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 71 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 250
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSS 429
KAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYP++
Sbjct: 251 KAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPAA 409
Score = 130 bits (279), Expect = 9e-030
Identities = 62/109 (56%), Positives = 70/109 (64%)
Frame = -2 / -3
Query: 422 GYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIRFPQ 243
GY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI P+
Sbjct: 402 GYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AILLPR 223
Query: 242 YHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 222 YQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 76
>gb|BQ703030.1|BQ703030 NXSI_135_F07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_135_F07 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 469
Score = 213 bits (460), Expect = 9e-055
Identities = 86/118 (72%), Positives = 97/118 (82%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 112 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 291
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
AYIYKAKTK GT+YRCIWGKV HGNSGVV AK NLPP+SMG +VRVFM PSSI
Sbjct: 292 AYIYKAKTKKGGTNYRCIWGKVTXXHGNSGVVXAKXXXNLPPKSMGGRVRVFMXPSSI 465
Score = 123 bits (264), Expect = 1e-027
Identities = 60/112 (53%), Positives = 69/112 (61%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLG +NTLTL PMD GG+ A TTP LPC TLPQ+ * VP *+*AI
Sbjct: 464 MLLGXINTLTLPPMDFGGKFXXXFAXTTPLLPCXXVTLPQIHL*LVPPFLVFAL*I*AIL 285
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y TSS V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 284 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 129
>gb|BE761889.1|BE761889 NXCI_071_B07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_071_B07 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 432
Score = 212 bits (457), Expect = 2e-054
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT V WY GKRM
Sbjct: 78 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPXXVNWYLGKRM 257
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
AYIYKAKTK GT+YRCIWGKV RPH NSGVVRAKF +NLPP+SM +V VFM P SI
Sbjct: 258 AYIYKAKTKXXGTNYRCIWGKVTRPHXNSGVVRAKFXTNLPPKSMXXRVXVFMXPXSI 431
Score = 115 bits (245), Expect = 4e-025
Identities = 59/112 (52%), Positives = 68/112 (60%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
ML G +NTLTL MD GG+ N A TTP L CG TLPQ+ * VP *+*AI
Sbjct: 430 MLXGXINTLTLXXMDFGGKFVXNFALTTPLLXCGLVTLPQIHL*LVPXXLVFAL*I*AIL 251
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
P+Y T V TPSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 250 LPRYQFTXXGVLTPSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 95
>gb|BF777568.1|BF777568 NXSI_070_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_070_A11 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 424
Score = 201 bits (433), Expect = 5e-051
Identities = 79/105 (75%), Positives = 89/105 (84%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 98 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 277
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESM 393
AYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAK NLPP+SM
Sbjct: 278 AYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKXXXNLPPKSM 412
Score = 104 bits (221), Expect = 9e-022
Identities = 51/99 (51%), Positives = 59/99 (59%)
Frame = -2 / -2
Query: 392 MDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIRFPQYHATSSLVFT 213
MD GG+ A TTP LPCG TLPQ+ * VP *+*AI P+Y TSS V T
Sbjct: 411 MDFGGKFXXXFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AILLPRYQFTSSGVLT 232
Query: 212 PSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
PSI +V YW D D L PR +PRT +L R P RPFT+
Sbjct: 231 PSI*IREVFGYWSDFDLL*PRMIPRTYNLIRSPWRPFTM 115
>gb|BF610418.1|BF610418 NXSI_058_B09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_B09 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 348
Score = 191 bits (412), Expect = 4e-048
Identities = 75/101 (74%), Positives = 85/101 (84%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +L YKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 45 INMVKGRQGERIRLYVRGIILXYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 224
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESM 393
KAKTK GT+YRCIWGKV PHGNSGVV AK +NLPP+SM
Sbjct: 225 KAKTKKKGTNYRCIWGKVTXPHGNSGVVXAKXXTNLPPKSM 347
Score = 101 bits (216), Expect = 4e-021
Identities = 51/99 (51%), Positives = 58/99 (58%)
Frame = -2 / -3
Query: 392 MDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIRFPQYHATSSLVFT 213
MD GG+ A TTP LPCG TLPQM * VP *+*AI P+Y TSS V T
Sbjct: 346 MDFGGKFVXXFAXTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AILLPRYQFTSSGVLT 167
Query: 212 PSICTSDVVSYWFDLDRLYPRTVPRT*SLTRCPVRPFTI 96
PSI +V YW D D L R +PRT +L R P RPFT+
Sbjct: 166 PSI*IREVFGYWSDFDLL*XRMIPRTYNLIRSPWRPFTM 50
>gb|CX646028.1|CX646028 COLD1_6_G06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_G06_A029 5', mRNA sequence
Length = 590
Score = 189 bits (408), Expect = 1e-047
Identities = 76/92 (82%), Positives = 83/92 (90%)
Frame = +1 / -1
Query: 160 KRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPHG 339
KRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIYKAKTK GT+YRCIWGKV RPHG
Sbjct: 590 KRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIYKAKTKKGGTNYRCIWGKVTRPHG 411
Query: 340 NSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
NSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 410 NSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 315
Score = 106 bits (227), Expect = 1e-022
Identities = 51/89 (57%), Positives = 57/89 (64%)
Frame = -2 / +1
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
MLLGY+NTLTL PMD GG+ LN A TTP LPCG TLPQ+ * VP *+*AI
Sbjct: 319 MLLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQIHL*LVPPFLVFAL*I*AIL 498
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLD 165
P+Y TSS V TPSI +V YW D D
Sbjct: 499 LPRYQFTSSGVLTPSI*IKEVFGYWSDFD 585
>gb|AW225892.1|AW225892 ST72H10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST72H10, mRNA sequence
Length = 361
Score = 185 bits (398), Expect = 3e-046
Identities = 73/101 (72%), Positives = 82/101 (81%)
Frame = +1 / +2
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM YIY
Sbjct: 59 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMXYIY 238
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESM 393
KAKTK GT+YRCIWGKV HGNSGVV AKF +NLP M
Sbjct: 239 KAKTKKKGTNYRCIWGKVTXXHGNSGVVXAKFXTNLPXXXM 361
>gb|CX647783.1|CX647783 COLD1_20_E01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_20_E01_A029 3', mRNA sequence
Length = 730
Score = 185 bits (398), Expect = 3e-046
Identities = 74/91 (81%), Positives = 81/91 (89%)
Frame = +1 / +1
Query: 163 RSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPHGN 342
RSKS+QY TSL+QIEGVNT E+V WY GKRMAYIYKAKTK GT+YRCIWGKV RPHGN
Sbjct: 106 RSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIYKAKTKKKGTNYRCIWGKVTRPHGN 285
Query: 343 SGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
SGVVRAKFR+NLPP+SMG +VRVFMYPS I*
Sbjct: 286 SGVVRAKFRTNLPPKSMGGRVRVFMYPSRI* 378
Score = 106 bits (227), Expect = 1e-022
Identities = 52/91 (57%), Positives = 57/91 (62%)
Frame = -2 / -3
Query: 431 MLLGYMNTLTLRPMDSGGRLDLNLARTTPELPCGRATLPQMQR*WVPXXXXXXX*M*AIR 252
M LGY+NTLTL PMD GG+ LN A TTP LPCG TLPQM * VP *+*AI
Sbjct: 374 MRLGYINTLTLPPMDFGGKFVLNFALTTPLLPCGLVTLPQMHL*LVPFFLVFAL*I*AIL 195
Query: 251 FPQYHATSSLVFTPSICTSDVVSYWFDLDRL 159
P+Y TSS V TPSI +V YW D D L
Sbjct: 194 LPRYQFTSSGVLTPSI*IREVFGYWSDFDLL 102
>gb|BF221323.1|BF221323 NXCI_157_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_D05 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 386
Score = 183 bits (395), Expect = 9e-046
Identities = 72/103 (69%), Positives = 82/103 (79%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 78 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 257
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPE 387
AYIYK KTK GT+YRCIWGKV HGN GVV AK NLPP+
Sbjct: 258 AYIYKXKTKKGGTNYRCIWGKVTXXHGNXGVVXAKXXXNLPPK 386
>gb|BE996989.1|BE996989 NXCI_093_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_093_H03 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 173 bits (373), Expect = 9e-043
Identities = 68/96 (70%), Positives = 77/96 (80%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GK M
Sbjct: 98 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKXM 277
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKF 366
YIYK KTK GT+YRCIWGKV HGNSGV RAKF
Sbjct: 278 XYIYKXKTKKGGTNYRCIWGKVTXXHGNSGVXRAKF 385
>gb|BF169412.1|BF169412 NXCI_120_F12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_120_F12 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 173 bits (372), Expect = 1e-042
Identities = 68/91 (74%), Positives = 76/91 (83%)
Frame = +1 / +1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYV G +L YKRSKS+QY TSL+QIEGVNT E+V WY GKRMAYIY
Sbjct: 46 INMVKGRQGERIRLYVXGIILXYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRMAYIY 225
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGVVRAK 363
KAKTK T+YRCIWGKV RPHGNSGVV AK
Sbjct: 226 KAKTKKXXTNYRCIWGKVTRPHGNSGVVXAK 318
>gb|BF517723.1|BF517723 NXSI_027_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_D10 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 387
Score = 170 bits (365), Expect = 1e-041
Identities = 67/92 (72%), Positives = 76/92 (82%)
Frame = +1 / +1
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 112 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 291
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVV 354
AYIYKAKTK T+YRCIWGKV HGNSGVV
Sbjct: 292 AYIYKAKTKXXXTNYRCIWGKVTXXHGNSGVV 387
>gb|BE241265.1|BE241265 NXNV_183_F03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_183_F03 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 285
Score = 164 bits (353), Expect = 5e-040
Identities = 64/87 (73%), Positives = 72/87 (82%)
Frame = +1 / +1
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT +V WY GKRMAYIY
Sbjct: 25 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPXEVNWYLGKRMAYIY 204
Query: 271 KAKTKSSGTHYRCIWGKVARPHGNSGV 351
KAKT GT+YRCIWGKV HGNSGV
Sbjct: 205 KAKTXXKGTNYRCIWGKVTXXHGNSGV 285
>gb|BE662414.1|BE662414 ST84/ST84H03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84H03, mRNA sequence
Length = 427
Score = 164 bits (352), Expect = 7e-040
Identities = 65/95 (68%), Positives = 74/95 (77%)
Frame = +1 / +3
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT E+V WY GKRM
Sbjct: 141 RAILINMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPEEVNWYLGKRM 320
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAK 363
YIYKAKTK GT+ RC WG V HGNSGV AK
Sbjct: 321 XYIYKAKTKKGGTNXRCXWGXVTXXHGNSGVXXAK 425
>gb|BF777579.1|BF777579 NXSI_070_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_070_B10 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 387
Score = 162 bits (349), Expect = 2e-039
Identities = 63/91 (69%), Positives = 72/91 (79%)
Frame = +1 / +2
Query: 79 RSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRM 258
R+ + MVKGR G+R+RLYVRG +LGYK KS+QY TSL+QIEGVNT E+V WY GK M
Sbjct: 113 RAILINMVKGRQGERIRLYVRGXILGYKXXKSDQYPNTSLIQIEGVNTPEEVNWYLGKXM 292
Query: 259 AYIYKAKTKSSGTHYRCIWGKVARPHGNSGV 351
AYIYK KTK GT+YRCIWGKV HGNSGV
Sbjct: 293 AYIYKXKTKKGGTNYRCIWGKVXXXHGNSGV 385
>gb|AA557016.1|AA557016 858 Loblolly pine N Pinus taeda cDNA clone 5N6D, mRNA sequence
Length = 634
Score = 148 bits (318), Expect = 4e-035
Identities = 58/70 (82%), Positives = 63/70 (90%)
Frame = +1 / +2
Query: 226 EDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKV 405
E+V WY GKRMAYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +V
Sbjct: 2 EEVNWYLGKRMAYIYKAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRV 181
Query: 406 RVFMYPSSI* 435
RVFMYPS I*
Sbjct: 182 RVFMYPSRI* 211
>gb|CO169034.1|CO169034 NDL1_4_F02.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_4_F02_A029 3', mRNA sequence
Length = 557
Score = 147 bits (316), Expect = 7e-035
Identities = 58/71 (81%), Positives = 63/71 (88%)
Frame = +1 / +3
Query: 223 KEDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRK 402
+ V WY GKRMAYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +
Sbjct: 27 QRXVNWYLGKRMAYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGR 206
Query: 403 VRVFMYPSSI* 435
VRVFMYPSSI*
Sbjct: 207 VRVFMYPSSI* 239
>gb|BX678167.1|BX678167 BX678167 RN Pinus pinaster cDNA clone RN57B10, mRNA sequence
Length = 437
Score = 146 bits (314), Expect = 1e-034
Identities = 57/66 (86%), Positives = 61/66 (92%)
Frame = +1 / +2
Query: 238 WYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFM 417
WY GKRMAYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFM
Sbjct: 2 WYLGKRMAYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFM 181
Query: 418 YPSSI* 435
YPSSI*
Sbjct: 182 YPSSI* 199
>gb|DR389038.1|DR389038 RTHG1_32_B10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_B10_A029 3', mRNA sequence
Length = 647
Score = 101 bits (215), Expect(2) = 6e-034
Identities = 40/71 (56%), Positives = 52/71 (73%)
Frame = +1 / +3
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYR 306
RLY +G VLG+KR+K N TSL+QIEGV +KE+ +Y GKR+AY+YKAK + G+ R
Sbjct: 204 RLYSKGRVLGHKRAKRNSRPNTSLLQIEGVGSKEEAQFYLGKRVAYVYKAKKERQGSKVR 383
Query: 307 CIWGKVARPHG 339
IWG+V RP G
Sbjct: 384 VIWGRVTRPTG 416
Score = 62.9 bits (131), Expect(2) = 6e-034
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +1 / +2
Query: 316 GKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
G HGNSGVV+ KFRSN+PP + G VRV +YPSSI*
Sbjct: 392 GSCHSSHGNSGVVKGKFRSNIPPHAFGASVRVMLYPSSI* 511
>gb|BX252657.1|BX252657 BX252657 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP068F09 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 551
Score = 136 bits (292), Expect = 1e-031
Identities = 54/63 (85%), Positives = 58/63 (92%)
Frame = +1 / +3
Query: 247 GKRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPS 426
GKRMAYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPS
Sbjct: 3 GKRMAYIYKAKTKKKGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPS 182
Query: 427 SI* 435
I*
Sbjct: 183 RI* 191
>gb|BX254564.1|BX254564 BX254564 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP100C10 similar to 60S RIBOSOMAL PROTEIN
L35A, mRNA sequence
Length = 530
Score = 136 bits (291), Expect = 2e-031
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +1 / +3
Query: 250 KRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSS 429
KRMAYIYKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSS
Sbjct: 3 KRMAYIYKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSS 182
Query: 430 I* 435
I*
Sbjct: 183 I* 188
>gb|BF186376.1|BF186376 NXCI_141_D04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_141_D04 5' similar to Arabidopsis
thaliana sequence At1g74270 putative ribosomal protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 211
Score = 130 bits (278), Expect = 1e-029
Identities = 51/69 (73%), Positives = 55/69 (79%)
Frame = +1 / +2
Query: 148 VLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVA 327
+LGYKRSKS+QY TSL+QIEGVNT V WY GKRMAYIYKAKTK GT+YRCIWGK
Sbjct: 5 ILGYKRSKSDQYPNTSLIQIEGVNTPXXVNWYLGKRMAYIYKAKTKKGGTNYRCIWGKXT 184
Query: 328 RPHGNSGVV 354
HGN GVV
Sbjct: 185 XXHGNXGVV 211
>gb|DR385336.1|DR385336 RTHG1_8_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_C03_A029 3', mRNA sequence
Length = 687
Score = 125 bits (268), Expect = 3e-028
Identities = 50/94 (53%), Positives = 69/94 (73%)
Frame = +1 / +1
Query: 157 YKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYRCIWGKVARPH 336
Y+RS++ + TSL++IEGV+ + +Y GK++A++Y+ + + GT R IWGKV RPH
Sbjct: 1 YQRSRNTTHSGTSLIKIEGVDDTKGANFYLGKKVAFVYRGQKEIRGTKIRVIWGKVTRPH 180
Query: 337 GNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI*R 438
GNSGVVRAKF S LP +S G VRV +YPSSI*+
Sbjct: 181 GNSGVVRAKFTSPLPTKSFGASVRVMLYPSSI*K 282
>gb|BX677173.1|BX677173 BX677173 RN Pinus pinaster cDNA clone RN18G06, mRNA sequence
Length = 404
Score = 122 bits (261), Expect = 3e-027
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 268 YKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI* 435
YKAKTK GT+YRCIWGKV RPHGNSGVVRAKFR+NLPP+SMG +VRVFMYPSSI*
Sbjct: 1 YKAKTKKGGTNYRCIWGKVTRPHGNSGVVRAKFRTNLPPKSMGGRVRVFMYPSSI* 168
>gb|BM903351.1|BM903351 NXRV_038_E04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_038_E04 5' similar to Arabidopsis thaliana
sequence At1g74270 putative ribosomal protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 315
Score = 121 bits (258), Expect = 7e-027
Identities = 48/71 (67%), Positives = 55/71 (77%)
Frame = +1 / +3
Query: 91 VEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIY 270
+ MVKGR G+R+RLYVRG +LGYKRSKS+QY TSL+QIEGVNT V WY GKR AYIY
Sbjct: 102 INMVKGRQGERIRLYVRGIILGYKRSKSDQYPNTSLIQIEGVNTPXXVNWYLGKRXAYIY 281
Query: 271 KAKTKSSGTHY 303
KTK T+Y
Sbjct: 282 XXKTKXXXTNY 314
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 321,367,559
Number of Sequences: 355925
Number of extensions: 3929430
Number of successful extensions: 33689
Number of sequences better than 1.0e-020: 87
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9866929035
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)