TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 172 5e-053
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 172 4e-047
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 172 4e-047
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 172 4e-047
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 171 2e-046
gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side ... 167 2e-045
gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response R... 111 1e-042
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 129 5e-042
gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinu... 171 7e-042
gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood... 160 7e-039
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 120 5e-034
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 143 2e-033
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 143 2e-033
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 143 2e-033
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 143 2e-033
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 143 2e-033
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 143 2e-033
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 143 2e-033
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 143 2e-033
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 143 2e-033
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 139 3e-033
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 120 6e-033
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 141 6e-033
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 141 6e-033
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 141 6e-033
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 141 6e-033
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 138 3e-032
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 137 8e-032
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 134 1e-031
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 137 1e-031
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 119 2e-031
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 123 3e-031
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 123 3e-031
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 123 4e-031
gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered lo... 115 5e-031
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 123 2e-030
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 128 3e-029
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 128 3e-029
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 123 1e-027
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 117 1e-027
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 108 2e-027
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 116 2e-025
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 106 2e-024
gb|CF664010.1|CF664010 RTCNT1_6_E05.g1_A029 Root control Pi... 90 2e-023
gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus... 109 3e-023
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 106 2e-022
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 105 5e-022
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 105 5e-022
gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Plani... 104 7e-022
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 172 bits (370), Expect(3) = 5e-053
Identities = 66/105 (62%), Positives = 85/105 (80%)
Frame = +2 / +1
Query: 74 PDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSL 253
P NV PGT+VDS++CHP+NFDF++C AG IGT+RPTHYHVL DE F+ D++Q VH+L
Sbjct: 292 PGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHAL 471
Query: 254 SYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
SYVYQRSTTAIS VAP+ YAHLAA+Q+ FL+ E++S+ +S G
Sbjct: 472 SYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDLSETASRLSG 606
Score = 114 bits (243), Expect(2) = 2e-029
Identities = 60/101 (59%), Positives = 64/101 (63%)
Frame = -1 / -3
Query: 375 EDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPISSCR 196
E S+ SS LRN W AA+ A* GAT E+AVVLL YT*+ T C SS LK SS
Sbjct: 593 EAVSERSSALRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFSSSN 414
Query: 195 T**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSG 73
T**WVG VPI PA H KSKFLGWQ ST VPG TL G
Sbjct: 413 T**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPG 291
Score = 39.1 bits (79), Expect(3) = 5e-053
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +1
Query: 407 SAPVPELPRLHDKVRSSMFFC* 472
SAPVPELP LH V ++MFFC*
Sbjct: 643 SAPVPELPVLHRNVCNTMFFC* 708
Score = 35.4 bits (71), Expect(3) = 5e-053
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFF 61
+ PK T+IVAQKN HTK F
Sbjct: 220 YKPKITMIVAQKNHHTKLF 276
Score = 35.4 bits (71), Expect(2) = 2e-029
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -1 / -3
Query: 468 QKNMELLTLSCRRGSSGTGAL 406
QKNM L T C GSSGTGAL
Sbjct: 704 QKNMVLQTFRCSTGSSGTGAL 642
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 172 bits (370), Expect(2) = 4e-047
Identities = 67/110 (60%), Positives = 84/110 (76%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL DE F D++Q VH+LSY
Sbjct: 113 NVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSY 292
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
VYQRSTTAIS VAP+ YAHLAA Q+ FL+ +E+S+ +S G S S
Sbjct: 293 VYQRSTTAISSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTAS 442
Score = 36.3 bits (73), Expect(2) = 4e-047
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQT 67
+ PK T+IVAQKN HTK F T
Sbjct: 41 YRPKVTLIVAQKNHHTKLFPT 103
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 172 bits (370), Expect(2) = 4e-047
Identities = 67/110 (60%), Positives = 84/110 (76%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL DE F D++Q VH+LSY
Sbjct: 434 NVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSY 613
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
VYQRSTTAIS VAP+ YAHLAA Q+ FL+ +E+S+ +S G S S
Sbjct: 614 VYQRSTTAISSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTAS 763
Score = 36.3 bits (73), Expect(2) = 4e-047
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQT 67
+ PK T+IVAQKN HTK F T
Sbjct: 362 YRPKVTLIVAQKNHHTKLFPT 424
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 172 bits (370), Expect(2) = 4e-047
Identities = 67/110 (60%), Positives = 84/110 (76%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL DE F D++Q VH+LSY
Sbjct: 233 NVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSY 412
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
VYQRSTTAIS VAP+ YAHLAA Q+ FL+ +E+S+ +S G S S
Sbjct: 413 VYQRSTTAISSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTAS 562
Score = 36.3 bits (73), Expect(2) = 4e-047
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQT 67
+ PK T+IVAQKN HTK F T
Sbjct: 161 YRPKVTLIVAQKNHHTKLFPT 223
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 171 bits (367), Expect(2) = 2e-046
Identities = 66/105 (62%), Positives = 84/105 (80%)
Frame = +2 / +1
Query: 74 PDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSL 253
P NV PGT+VDS++CHP+NFDF++C AG IGT+RPTHYHVL DE F+ D++Q VH+L
Sbjct: 172 PGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHAL 351
Query: 254 SYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGG 388
SYVYQRSTTAIS VAP+ YAHLAA+Q+ FL+ E +S+ +S G
Sbjct: 352 SYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEXLSETASRLSG 486
Score = 115 bits (245), Expect = 5e-025
Identities = 60/101 (59%), Positives = 64/101 (63%)
Frame = -1 / -2
Query: 375 EDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPISSCR 196
E S+ SS LRN W AA+ A* GAT E+AVVLL YT*+ T C SS LK SS
Sbjct: 473 EAVSEXSSALRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFSSSN 294
Query: 195 T**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSG 73
T**WVG VPI PA H KSKFLGWQ ST VPG TL G
Sbjct: 293 T**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPG 171
Score = 35.4 bits (71), Expect(2) = 2e-046
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2 / +1
Query: 5 WSPKFTVIVAQKNXHTKFF 61
+ PK T+IVAQKN HTK F
Sbjct: 100 YKPKITMIVAQKNHHTKLF 156
>gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_A09 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 167 bits (359), Expect(2) = 2e-045
Identities = 65/104 (62%), Positives = 82/104 (78%)
Frame = +2 / +2
Query: 74 PDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSL 253
P NV PGT+VDS++CHP+NFDF++C AG IGT+RPTHYHVL DE F+ D++Q VH+L
Sbjct: 164 PGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHAL 343
Query: 254 SYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
SYVYQRSTTAIS VAP+ YAHLAA+Q+ FL +S+ +S G
Sbjct: 344 SYVYQRSTTAISSVAPINYAHLAASQMQQFLXXXXLSETASRXG 475
Score = 111 bits (236), Expect = 8e-024
Identities = 58/104 (55%), Positives = 62/104 (59%)
Frame = -1 / -1
Query: 384 PWLEDASDISSNLRNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPIS 205
P E S+ RN W AA+ A* GAT E+AVVLL YT*+ T C SS LK S
Sbjct: 474 PXREAVSEXXXXXRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFS 295
Query: 204 SCRT**WVGLVVPIIPACAHM*KSKFLGWQTLLSTTVPGRTLSG 73
S T**WVG VPI PA H KSKFLGWQ ST VPG TL G
Sbjct: 294 SSNT**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPG 163
Score = 35.4 bits (71), Expect(2) = 2e-045
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFF 61
+ PK T+IVAQKN HTK F
Sbjct: 92 YKPKITMIVAQKNHHTKLF 148
>gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_D11_A033 3', mRNA sequence
Length = 839
Score = 111 bits (238), Expect(3) = 1e-042
Identities = 40/61 (65%), Positives = 50/61 (81%)
Frame = +2 / -1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL DE F D++Q VH+LSY
Sbjct: 701 NVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSY 522
Query: 260 V 262
V
Sbjct: 521 V 519
Score = 63.4 bits (132), Expect(3) = 1e-042
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +2 / -1
Query: 263 YQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGS 409
YQRSTTAIS VAP+ YAHLAA Q+ FL+ +E+S+ +S G S S
Sbjct: 428 YQRSTTAISSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTAS 282
Score = 36.3 bits (73), Expect(3) = 1e-042
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / -1
Query: 5 WSPKFTVIVAQKNXHTKFFQT 67
+ PK T+IVAQKN HTK F T
Sbjct: 773 YRPKVTLIVAQKNHHTKLFPT 711
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 129 bits (277), Expect(3) = 5e-042
Identities = 48/69 (69%), Positives = 58/69 (84%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL DE F D++Q VH+LSY
Sbjct: 278 NVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSY 457
Query: 260 VYQRSTTAI 286
VYQRSTTAI
Sbjct: 458 VYQRSTTAI 484
Score = 43.7 bits (89), Expect(3) = 5e-042
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2 / +3
Query: 374 SSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
S + G T++G A VPELP LH V +MFFC*
Sbjct: 576 SGRAEGSTASGGAHVPELPALHQNVCHTMFFC* 674
Score = 36.3 bits (73), Expect(3) = 5e-042
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFFQT 67
+ PK T+IVAQKN HTK F T
Sbjct: 206 YRPKVTLIVAQKNHHTKLFPT 268
>gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H03_A029 5', mRNA sequence
Length = 441
Score = 171 bits (367), Expect = 7e-042
Identities = 66/117 (56%), Positives = 86/117 (73%)
Frame = +2 / +2
Query: 26 IVAQKNXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHD 205
++ +N H NV PGT+VD+++CHP+NFDFY+C AG IGT+RPTHYHVL D
Sbjct: 74 LIVAQNNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 253
Query: 206 EIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASS 376
E F D++Q VH+LSYVYQRSTTAIS VAP+ YAHLAA Q+ FL+ +E+S+ +S
Sbjct: 254 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADELSETAS 424
>gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_096_G04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 160 bits (345), Expect = 7e-039
Identities = 63/97 (64%), Positives = 77/97 (79%)
Frame = +2 / +1
Query: 74 PDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSL 253
P NV PGT+VDS++CHP+NFDF++C AG IGT+RPTHYHVL DE F+ D++Q VH+L
Sbjct: 22 PGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHAL 201
Query: 254 SYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMS 364
SYVYQRSTTAIS VAP YAHLAA+Q+ FL +S
Sbjct: 202 SYVYQRSTTAISSVAPXXYAHLAASQMQQFLXXXXLS 312
Score = 106 bits (227), Expect = 1e-022
Identities = 55/91 (60%), Positives = 58/91 (63%)
Frame = -1 / -2
Query: 345 RNVLTWAAARWA*HTGATTEMAVVLLWYT*ESE*TNSCISSALKPISSCRT**WVGLVVP 166
RN W AA+ A* GAT E+AVVLL YT*+ T C SS LK SS T**WVG VP
Sbjct: 293 RNCCIWLAAKCA*XIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFSSSNT**WVGRDVP 114
Query: 165 IIPACAHM*KSKFLGWQTLLSTTVPGRTLSG 73
I PA H KSKFLGWQ ST VPG TL G
Sbjct: 113 IGPA*GHKKKSKFLGWQIWESTIVPGCTLPG 21
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 120 bits (256), Expect(3) = 5e-034
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = +2 / -3
Query: 62 QTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEF 241
Q NV PGTVVD+ + HP+ FDFY+C+H G++GT++PTHYHVL D+ F++DE++
Sbjct: 483 QRTKSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETL 304
Query: 242 VHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLR 349
+++L Y + R T +S+ PV YA LAA + +L+
Sbjct: 303 INNLCYTFARCTKPVSLAPPVYYADLAAYRGRLYLQ 196
Score = 36.8 bits (74), Expect(3) = 5e-034
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2 / -3
Query: 344 LRLEEMSDASSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
L L+ ++ SS +S+ S+ P+LHD V+++MFFC*
Sbjct: 207 LYLQGLAFTSSETASTSSSSSSSAHLNFPKLHDGVKNAMFFC* 79
Score = 25.8 bits (50), Expect(3) = 5e-034
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / -3
Query: 5 WSPKFTVIVAQKNXHTKFF 61
++P + IVAQK HT+ F
Sbjct: 555 YNPPVSFIVAQKRHHTRLF 499
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 156 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 335
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 336 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 500
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +2
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 257 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 436
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 437 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 601
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 111 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 290
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 291 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 455
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +2
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 428 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 607
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 608 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 772
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +2
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 68 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 247
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 248 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 412
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 15 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 194
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 195 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 359
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +2
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 200 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 379
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 380 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 544
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 234 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 413
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 414 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 578
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 143 bits (306), Expect = 2e-033
Identities = 57/115 (49%), Positives = 72/115 (62%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 390 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 569
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 570 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 734
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 139 bits (298), Expect(2) = 3e-033
Identities = 54/109 (49%), Positives = 73/109 (66%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDS +CHP FDFY+C+HAG+ GT+RP HYHVL D+ F+AD +Q ++L Y
Sbjct: 151 NILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCY 330
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
Y R T ++S+V P YAHLAA + ++ E + S G +SAG
Sbjct: 331 TYARCTRSVSIVPPAYYAHLAAFRARFYIEPETSDNGSLHSGLRGSSAG 477
Score = 22.6 bits (43), Expect(2) = 3e-033
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1 / +3
Query: 403 WQCSCAGAASPA*QSQELHVLLL 471
W C C+ S + +E +VLLL
Sbjct: 516 WSCCCSAFTSY*GKCEESYVLLL 584
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 120 bits (256), Expect(3) = 6e-033
Identities = 44/96 (45%), Positives = 67/96 (69%)
Frame = +2 / +2
Query: 62 QTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEF 241
Q NV PGTVVD+ + HP+ FDFY+C+H G++GT++PTHYHVL D+ F++DE++
Sbjct: 68 QRTKSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETL 247
Query: 242 VHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLR 349
+++L Y + R T +S+ PV YA LAA + +L+
Sbjct: 248 INNLCYTFARCTKPVSLAPPVYYADLAAYRGRLYLQ 355
Score = 36.8 bits (74), Expect(3) = 6e-033
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2 / +2
Query: 344 LRLEEMSDASSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
L L+ ++ SS +S+ S+ P+LHD V+++MFFC*
Sbjct: 344 LYLQGLAFTSSETASTSSSSSSSAHLNFPKLHDGVKNAMFFC* 472
Score = 22.1 bits (42), Expect(3) = 6e-033
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2 / +2
Query: 26 IVAQKNXHTKFF 61
IVAQK HT+ F
Sbjct: 17 IVAQKRHHTRLF 52
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 141 bits (302), Expect = 6e-033
Identities = 54/102 (52%), Positives = 69/102 (67%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 74 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 253
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 254 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 379
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 141 bits (302), Expect = 6e-033
Identities = 54/102 (52%), Positives = 69/102 (67%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 23 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 202
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 203 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 328
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 141 bits (302), Expect = 6e-033
Identities = 56/115 (48%), Positives = 71/115 (61%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 6 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 185
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++ Y Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 186 ADGLQSLTNNFCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 350
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 141 bits (302), Expect = 6e-033
Identities = 54/102 (52%), Positives = 69/102 (67%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y
Sbjct: 31 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 210
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
Y R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 211 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSG 336
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 138 bits (297), Expect = 3e-032
Identities = 54/109 (49%), Positives = 72/109 (66%)
Frame = +2 / +3
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDS +CHP FDFY+C+HAG+ GT+RP HYHVL D+ F+AD +Q ++L Y
Sbjct: 192 NILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCY 371
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
Y R T ++S+V P YAHLAA + ++ E S G +SAG
Sbjct: 372 TYARCTRSVSIVPPAYYAHLAAFRARFYIEPETSDSGSLHSGLPGSSAG 518
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 137 bits (294), Expect = 8e-032
Identities = 53/102 (51%), Positives = 68/102 (66%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 492 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 671
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFL 346
AD +Q ++L Y Y R T ++S+V P YAHLAA + ++
Sbjct: 672 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM 797
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 134 bits (287), Expect(2) = 1e-031
Identities = 53/109 (48%), Positives = 70/109 (64%)
Frame = +2 / +2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDS +CHP DFY+C+HAG+ GT+ P HYHVL D+ F AD +Q ++L Y
Sbjct: 335 NILPGTVVDSTICHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFTADALQSLTNNLCY 514
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAG 406
Y R T ++S+V P YAHLAA + +L E + S G +SAG
Sbjct: 515 TYARCTRSVSIVPPAYYAHLAAFRARFYLEPETSDNGSLHSGLRGSSAG 661
Score = 22.6 bits (43), Expect(2) = 1e-031
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1 / +1
Query: 403 WQCSCAGAASPA*QSQELHVLLL 471
W C C+ S + +E +VLLL
Sbjct: 700 WSCCCSAFTSY*GKCEESYVLLL 768
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 137 bits (293), Expect = 1e-031
Identities = 55/115 (47%), Positives = 70/115 (60%)
Frame = +2 / +1
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTV DSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 73 NNHQDRNATDRSGNILPGTVXDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 252
Query: 221 ADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
AD +Q ++L Y Y R T ++S+V P YAHLAA + + + S S G
Sbjct: 253 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFXMEPQTPXSGSLSNG 417
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 119 bits (254), Expect(2) = 2e-031
Identities = 43/90 (47%), Positives = 66/90 (73%)
Frame = +2 / -2
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGTVVD+ + HP+ FDFY+C+H G++GT++PTHYHVL D+ F++DE++ +++L Y
Sbjct: 718 NVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCY 539
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFLR 349
+ R T +S+ PV YA LAA + +L+
Sbjct: 538 TFARCTKPVSLAPPVYYADLAAYRGRLYLQ 449
Score = 36.8 bits (74), Expect(2) = 2e-031
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2 / -2
Query: 344 LRLEEMSDASSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
L L+ ++ SS +S+ S+ P+LHD V+++MFFC*
Sbjct: 460 LYLQGLAFTSSETASTSSSSSSSAHLNFPKLHDGVKNAMFFC* 332
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 123 bits (264), Expect(2) = 3e-031
Identities = 49/107 (45%), Positives = 69/107 (64%)
Frame = +2 / +2
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+LPGTVVDS +C PK FDFY+C+HAG+ GT++P HY+VL DE GF +++Q
Sbjct: 386 TLKNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLT 565
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
+ L + Y R T ++S+V YAHLAA + +L S++ S G
Sbjct: 566 NDLCFTYARCTRSVSIVPACYYAHLAAKRARVWLDSGISSESGSFHG 706
Score = 31.8 bits (63), Expect(2) = 3e-031
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 8 SPKFTVIVAQKNXHTKFF 61
SPK T IV QK HT+FF
Sbjct: 308 SPKVTFIVVQKRHHTRFF 361
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 123 bits (264), Expect(2) = 3e-031
Identities = 49/107 (45%), Positives = 69/107 (64%)
Frame = +2 / +3
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+LPGTVVDS +C PK FDFY+C+HAG+ GT++P HY+VL DE GF +++Q
Sbjct: 186 TLKNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLT 365
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
+ L + Y R T ++S+V YAHLAA + +L S++ S G
Sbjct: 366 NDLCFTYARCTRSVSIVPACYYAHLAAKRARVWLDSGISSESGSFHG 506
Score = 31.8 bits (63), Expect(2) = 3e-031
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2 / +3
Query: 8 SPKFTVIVAQKNXHTKFF 61
SPK T IV QK HT+FF
Sbjct: 108 SPKVTFIVVQKRHHTRFF 161
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 123 bits (263), Expect(2) = 4e-031
Identities = 49/107 (45%), Positives = 69/107 (64%)
Frame = +2 / +1
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+LPGTVVDS +C PK FDFY+C+HAG+ GT++P HY+VL DE GF +++Q
Sbjct: 157 TLKNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLT 336
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
+ L + Y R T ++S+V YAHLAA + +L S++ S G
Sbjct: 337 NDLCFTYARCTRSVSIVPACYYAHLAAKRARVWLDSGINSESGSFHG 477
Score = 31.8 bits (63), Expect(2) = 4e-031
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2 / +1
Query: 8 SPKFTVIVAQKNXHTKFF 61
SPK T IV QK HT+FF
Sbjct: 79 SPKVTFIVVQKRHHTRFF 132
>gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 3', mRNA sequence
Length = 608
Score = 115 bits (246), Expect(2) = 5e-031
Identities = 47/75 (62%), Positives = 60/75 (80%)
Frame = +2 / +3
Query: 164 IGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTF 343
IGT+RPTHYHVL DE F+ D++Q VH+LSYVYQRSTTAIS VAP+ YAHLAA+Q+ F
Sbjct: 3 IGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQF 182
Query: 344 LRLEEMSDASSSQGG 388
L+ E++S+ +S G
Sbjct: 183 LKAEDLSETASRLSG 227
Score = 39.1 bits (79), Expect(2) = 5e-031
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +3
Query: 407 SAPVPELPRLHDKVRSSMFFC* 472
SAPVPELP LH V ++MFFC*
Sbjct: 264 SAPVPELPVLHRNVCNTMFFC* 329
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 123 bits (264), Expect(2) = 2e-030
Identities = 49/107 (45%), Positives = 69/107 (64%)
Frame = +2 / +1
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+LPGTVVDS +C PK FDFY+C+HAG+ GT++P HY+VL DE GF +++Q
Sbjct: 103 TLKNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLT 282
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
+ L + Y R T ++S+V YAHLAA + +L S++ S G
Sbjct: 283 NDLCFTYARCTRSVSIVPACYYAHLAAKRARVWLDSGISSESGSFHG 423
Score = 29.0 bits (57), Expect(2) = 2e-030
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / +1
Query: 8 SPKFTVIVAQKNXHTKFF 61
SPK T IV Q HT+FF
Sbjct: 25 SPKVTFIVVQXRHHTRFF 78
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 128 bits (275), Expect = 3e-029
Identities = 51/112 (45%), Positives = 73/112 (65%)
Frame = +2 / -3
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
DN+ PGTVVD+ + HP+ FDFY+C+H+G+ GT+RPTHYHVL DE F +DE+Q+ +++L
Sbjct: 435 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 256
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y + R T +S+V YAHLAA + +L +SS TS S+
Sbjct: 255 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLEKSGSISETSSSRSTSTSEASS 100
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 128 bits (275), Expect = 3e-029
Identities = 51/112 (45%), Positives = 73/112 (65%)
Frame = +2 / -3
Query: 77 DNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLS 256
DN+ PGTVVD+ + HP+ FDFY+C+H+G+ GT+RPTHYHVL DE F +DE+Q+ +++L
Sbjct: 566 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 387
Query: 257 YVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGHTSAGSA 412
Y + R T +S+V YAHLAA + +L +SS TS S+
Sbjct: 386 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLEKSGSISETSSSRSTSTSEASS 231
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 123 bits (264), Expect = 1e-027
Identities = 49/107 (45%), Positives = 69/107 (64%)
Frame = +2 / -3
Query: 65 TASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFV 244
T N+LPGTVVDS +C PK FDFY+C+HAG+ GT++P HY+VL DE GF +++Q
Sbjct: 611 TLKNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLT 432
Query: 245 HSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
+ L + Y R T ++S+V YAHLAA + +L S++ S G
Sbjct: 431 NDLCFTYARCTRSVSIVPACYYAHLAAKRARVWLDSGISSESGSFHG 291
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 117 bits (250), Expect(2) = 1e-027
Identities = 42/87 (48%), Positives = 62/87 (71%)
Frame = +2 / +2
Query: 62 QTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEF 241
Q NV PGTVVD+ + HP+ FDFY+C+H G++GT++PTHYHVL D+ F++DE++
Sbjct: 563 QRTKSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETL 742
Query: 242 VHSLSYVYQRSTTAISVVAPVCYAHLA 322
+++L Y + R T +S+ PV YA LA
Sbjct: 743 INNLCYTFARCTKPVSLAPPVYYADLA 823
Score = 25.8 bits (50), Expect(2) = 1e-027
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / +2
Query: 5 WSPKFTVIVAQKNXHTKFF 61
++P + IVAQK HT+ F
Sbjct: 491 YNPPVSFIVAQKRHHTRLF 547
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 108 bits (230), Expect(2) = 2e-027
Identities = 37/80 (46%), Positives = 57/80 (71%)
Frame = +2 / +1
Query: 62 QTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEF 241
Q NV PGTVVD+ + HP+ FDFY+C+H G++GT++PTHYHVL D+ F++DE++
Sbjct: 16 QRTKSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETL 195
Query: 242 VHSLSYVYQRSTTAISVVAP 301
+++L Y + R T +S+ P
Sbjct: 196 INNLCYTFARCTKPVSLAPP 255
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2 / +2
Query: 344 LRLEEMSDASSSQGGGHTSAGSAPVPELPRLHDKVRSSMFFC* 472
L L+ ++ S +S+ S+ P+LHD V+++MFFC*
Sbjct: 293 LYLQGLAFTSFETASTSSSSSSSAHLNFPKLHDGVKNAMFFC* 421
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 116 bits (247), Expect = 2e-025
Identities = 44/89 (49%), Positives = 60/89 (67%)
Frame = +2 / -1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
N+LPGTVVDS +C PK FDFY C+HAG+ GT++P HY+V DE GF +++Q + L +
Sbjct: 598 NLLPGTVVDSVICQPKIFDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTNDLCF 419
Query: 260 VYQRSTTAISVVAPVCYAHLAAAQVSTFL 346
Y R T +S+V YAHLAA + +L
Sbjct: 418 TYARCTRFVSIVPACYYAHLAAKRARVWL 332
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 106 bits (226), Expect(2) = 2e-024
Identities = 39/82 (47%), Positives = 59/82 (71%)
Frame = +2 / +1
Query: 80 NVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSY 259
NV PGTVVD+ + P+ FD Y+C+H G++GT++ THYHVL D+ F++DE++ +++L Y
Sbjct: 220 NVPPGTVVDTVIVRPRQFDGYLCSHNGLLGTSKRTHYHVLWDDNRFSSDELETLINNLCY 399
Query: 260 VYQRSTTAISVVAPVCYAHLAA 325
+ R T +S+ PV YA LAA
Sbjct: 400 TFARCTKPVSLAPPVYYADLAA 465
Score = 25.8 bits (50), Expect(2) = 2e-024
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2 / +1
Query: 398 SAGSAPVPELPRLHDKVRSSMFFC* 472
S+ S+ +P+LHD V++ +F C*
Sbjct: 532 SSXSSXHLNVPKLHDGVKNXVFXC* 606
>gb|CF664010.1|CF664010 RTCNT1_6_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_E05_A029 5', mRNA sequence
Length = 611
Score = 90.0 bits (190), Expect(2) = 2e-023
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = +2 / -3
Query: 215 FNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQGGGH 394
F+ D++Q VH+LSYVYQRSTTAIS VAP+ YAHLAA+Q+ FL+ E++S+ +S G G
Sbjct: 606 FSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDLSETASRSGKGE 427
Query: 395 TSAGS 409
S S
Sbjct: 426 GSVAS 412
Score = 39.1 bits (79), Expect(2) = 2e-023
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / -3
Query: 407 SAPVPELPRLHDKVRSSMFFC* 472
SAPVPELP LH V ++MFFC*
Sbjct: 399 SAPVPELPVLHRNVCNTMFFC* 334
>gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_G01_A029 5', mRNA sequence
Length = 652
Score = 109 bits (232), Expect = 3e-023
Identities = 46/78 (58%), Positives = 56/78 (71%)
Frame = +2 / -1
Query: 176 RPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCYAHLAAAQVSTFLRLE 355
RPTHYHVL DE F D++Q VH+LSYVYQRSTTAIS VAP+ YAHLAA Q+ FL+ +
Sbjct: 652 RPTHYHVLLDENSFIVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKAD 473
Query: 356 EMSDASSSQGGGHTSAGS 409
E+S+ +S G S S
Sbjct: 472 ELSETASRSGRAEGSTAS 419
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 106 bits (226), Expect = 2e-022
Identities = 44/99 (44%), Positives = 57/99 (57%)
Frame = +2 / +3
Query: 89 PGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQ 268
PG K HP DF +C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y Y
Sbjct: 330 PGMEWIPKFGHPTELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYA 509
Query: 269 RSTTAISVVAPVCYAHLAAAQVSTFLRLEEMSDASSSQG 385
R T ++S+V P YAHLAA + ++ E S S G
Sbjct: 510 RCTRSVSIVTPAYYAHLAAFRARFYMEPETSDSGSLSSG 626
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 105 bits (223), Expect = 5e-022
Identities = 40/71 (56%), Positives = 49/71 (69%)
Frame = +2 / +3
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 531 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 710
Query: 221 ADEMQEFVHSL 253
AD +Q ++L
Sbjct: 711 ADGLQSLTNNL 743
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 105 bits (223), Expect = 5e-022
Identities = 40/71 (56%), Positives = 49/71 (69%)
Frame = +2 / +1
Query: 41 NXHTKFFQTASPDNVLPGTVVDSKVCHPKNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFN 220
N H T N+LPGTVVDSK+CHP FDFY+C+HAG+ GT+RP HYHVL DE F
Sbjct: 565 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 744
Query: 221 ADEMQEFVHSL 253
AD +Q ++L
Sbjct: 745 ADGLQSLTNNL 777
>gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_C07 5' similar to Arabidopsis
thaliana sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 104 bits (222), Expect = 7e-022
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +2 / +3
Query: 131 FDFYMCAHAGMIGTTRPTHYHVLHDEIGFNADEMQEFVHSLSYVYQRSTTAISVVAPVCY 310
FDFY+C+HAG+ GT+RP HYHVL DE F AD +Q ++L Y Y R T ++S+V P Y
Sbjct: 6 FDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYY 185
Query: 311 AHLAAAQVSTFLRLEEMSDASSSQG 385
AHLAA + ++ E S S G
Sbjct: 186 AHLAAFRARFYMEPETSDSGSLSSG 260
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 460,817,723
Number of Sequences: 355925
Number of extensions: 7575493
Number of successful extensions: 55343
Number of sequences better than 1.0e-020: 59
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10513940775
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)