TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR694155.1|DR694155 EST1084245 Normalized pine embryo li... 80 2e-022
gb|BE451756.1|BE451756 NXCI_001_H01_F NXCI (Nsf Xylem Compr... 75 5e-013
gb|CV032807.1|CV032807 RTNACL1_18_A09.g1_A029 Roots plus ad... 74 6e-013
gb|BF186180.1|BF186180 NXCI_131_A07_F NXCI (Nsf Xylem Compr... 74 9e-013
gb|BF609491.1|BF609491 NXSI_043_C02_F NXSI (Nsf Xylem Side ... 57 1e-011
gb|BQ290728.1|BQ290728 NXRV048_H02_F NXRV (Nsf Xylem Root w... 61 9e-009
gb|BQ655183.1|BQ655183 NXRV091_B10_F NXRV (Nsf Xylem Root w... 61 9e-009
gb|CD016484.1|CD016484 NXCI_050_B03_F NXCI (Nsf Xylem Compr... 41 1e-006
gb|DR071505.1|DR071505 RTDK1_20_G05.b1_A029 Roots, dark Pin... 36 0.18
gb|AL749811.1|AL749811 AL749811 AS Pinus pinaster cDNA clon... 27 0.65
gb|BG040732.1|BG040732 NXSI_114_D10_F NXSI (Nsf Xylem Side ... 28 1.9
gb|AY634333.1| Pinus echinata putative LEA protein (ifg8612... 29 2.2
gb|BI397745.1|BI397745 NXPV_104_G10_F NXPV (Nsf Xylem Plani... 33 2.3
gb|DR100649.1|DR100649 STRR1_66_E06.b1_A033 Stem Response R... 33 2.3
gb|CF668932.1|CF668932 RTCNT1_39_C02.g1_A029 Root control P... 27 2.7
gb|CF395421.1|CF395421 RTDS2_11_B12.g1_A021 Drought-stresse... 29 3.0
gb|BQ290447.1|BQ290447 NXRV046_D05_F NXRV (Nsf Xylem Root w... 32 3.1
gb|CV032764.1|CV032764 RTNACL1_18_E06.b1_A029 Roots plus ad... 32 3.1
gb|DR160510.1|DR160510 RTFE1_6_A07.g1_A029 Roots minus iron... 32 3.1
gb|DR387382.1|DR387382 RTHG1_21_H06.b1_A029 Roots plus adde... 32 3.1
gb|CX652968.1|CX652968 COLD1_62_C11.g1_A029 Root cold Pinus... 27 3.3
gb|CF397774.1|CF397774 RTDS3_1_E09.g1_A022 Drought-stressed... 27 3.3
gb|DR012538.1|DR012538 HEAT1_13_B02.g1_A029 Root at 37 C fo... 27 3.3
gb|CO361072.1|CO361072 NDL2_2_C01.g1_A029 Needles control 2... 27 3.4
gb|CV031806.1|CV031806 RTNACL1_3_G04.g1_A029 Roots plus add... 27 3.4
gb|CX650284.1|CX650284 COLD1_44_E01.g1_A029 Root cold Pinus... 27 3.4
gb|CO361081.1|CO361081 NDL2_2_D01.g1_A029 Needles control 2... 27 3.4
gb|DR013618.1|DR013618 HEAT1_20_A03.g1_A029 Root at 37 C fo... 27 3.4
gb|DR057974.1|DR057974 RTNIT1_8_H10.g1_A029 Roots minus nit... 27 3.4
gb|CO366590.1|CO366590 RTK1_28_G01.g1_A029 Roots minus pota... 27 3.4
gb|DR181754.1|DR181754 RTMNUT1_40_G01.g2_A029 Roots minus m... 27 3.4
gb|CO368698.1|CO368698 RTK1_42_F05.b1_A029 Roots minus pota... 27 3.4
gb|CO366279.1|CO366279 RTK1_26_H10.g1_A029 Roots minus pota... 27 3.4
gb|DR060363.1|DR060363 RTNIT1_27_H04.b1_A029 Roots minus ni... 27 3.4
gb|CF474717.1|CF474717 RTWW2_7_H03.g1_A021 Well-watered lob... 27 3.4
gb|CF478408.1|CF478408 RTWW3_18_D06.g1_A022 Well-watered lo... 27 3.4
gb|CV033787.1|CV033787 RTNACL1_36_D04.g1_A029 Roots plus ad... 27 3.4
gb|CX652811.1|CX652811 COLD1_61_D04.g1_A029 Root cold Pinus... 27 3.4
gb|CF665034.1|CF665034 RTCNT1_13_A11.g1_A029 Root control P... 27 3.4
gb|DR058133.1|DR058133 RTNIT1_9_H12.g1_A029 Roots minus nit... 27 3.4
gb|CO175315.1|CO175315 NDL1_53_H01.g1_A029 Needles control ... 27 3.4
gb|CO201547.1|CO201547 RTCNT2_6_B08.g1_A029 Root control 2 ... 27 3.4
gb|CV036217.1|CV036217 RTNACL1_57_C03.g1_A029 Roots plus ad... 27 3.4
gb|DR012882.1|DR012882 HEAT1_15_C10.g1_A029 Root at 37 C fo... 27 3.4
gb|DR179684.1|DR179684 RTMNUT1_23_E10.g2_A029 Roots minus m... 27 3.4
gb|CF474084.1|CF474084 RTWW2_18_B02.g1_A021 Well-watered lo... 27 3.4
gb|CF477695.1|CF477695 RTWW3_9_G06.g1_A022 Well-watered lob... 27 3.4
gb|CV031558.1|CV031558 RTNACL1_2_G05.b1_A029 Roots plus add... 27 3.4
gb|CF388592.1|CF388592 RTDR2_4_D04.g1_A021 Loblolly pine ro... 27 3.4
gb|CX716092.1|CX716092 RTPQ1_40_C07.g1_A032 Roots treated w... 27 3.4
gb|AI725060.1|AI725060 959 PtIFG2 Pinus taeda cDNA clone 88... 27 3.4
gb|CF665681.1|CF665681 RTCNT1_17_E04.g1_A029 Root control P... 27 3.4
gb|DR179378.1|DR179378 RTMNUT1_21_F04.g2_A029 Roots minus m... 27 3.4
gb|CO159248.1|CO159248 FLD1_12_A03.g1_A029 Root flooded Pin... 27 3.4
gb|DR047511.1|DR047511 RTBOR1_1_B08.g1_A029 Roots plus adde... 27 3.4
gb|CO175316.1|CO175316 NDL1_53_H03.g1_A029 Needles control ... 27 3.4
gb|DR169083.1|DR169083 RTPHOS1_29_H10.g1_A029 Roots minus p... 27 3.4
gb|DR163284.1|DR163284 RTFE1_42_B04.b1_A029 Roots minus iro... 25 4.5
gb|CF392212.1|CF392212 RTDR3_8_F01.g1_A022 Loblolly pine ro... 31 8.1
gb|DR013179.1|DR013179 HEAT1_17_C05.g1_A029 Root at 37 C fo... 31 8.1
gb|DR018232.1|DR018232 STRS1_21_A02.g1_A034 Shoot tip pitch... 31 8.1
gb|DR018402.1|DR018402 STRS1_22_E12.g1_A034 Shoot tip pitch... 31 8.1
gb|DR051609.1|DR051609 RTBOR1_31_E07.b1_A029 Roots plus add... 31 8.1
gb|DR078160.1|DR078160 RTFEPL1_2_G02.b1_A029 Roots plus add... 31 8.1
gb|DR080949.1|DR080949 RTFEPL1_26_G10.b1_A029 Roots plus ad... 31 8.1
gb|DR081194.1|DR081194 RTFEPL1_28_C03.b1_A029 Roots plus ad... 31 8.1
gb|DR097235.1|DR097235 STRR1_33_A04.g3_A033 Stem Response R... 31 8.1
gb|DR097236.1|DR097236 STRR1_33_A05.g3_A033 Stem Response R... 31 8.1
gb|DR160720.1|DR160720 RTFE1_7_D11.g1_A029 Roots minus iron... 31 8.1
gb|DR168566.1|DR168566 RTPHOS1_26_H02.b1_A029 Roots minus p... 31 8.1
gb|DR387411.1|DR387411 RTHG1_21_C07.g2_A029 Roots plus adde... 31 8.1
gb|DR388829.1|DR388829 RTHG1_30_E10.g1_A029 Roots plus adde... 31 8.1
gb|DR682661.1|DR682661 EST1072736 Normalized pine embryo li... 31 8.1
gb|DR684156.1|DR684156 EST1074233 Normalized pine embryo li... 31 8.1
gb|DR691127.1|DR691127 EST1081213 Normalized pine embryo li... 31 8.1
gb|DR691875.1|DR691875 EST1081962 Normalized pine embryo li... 31 8.1
gb|DR694663.1|DR694663 EST1084755 Normalized pine embryo li... 31 8.1
gb|DR694691.1|DR694691 EST1084783 Normalized pine embryo li... 31 8.1
gb|DR695151.1|DR695151 EST1085244 Normalized pine embryo li... 31 8.1
gb|DT627784.1|DT627784 EST1156533 Subtracted pine embryo li... 31 8.1
gb|DT628860.1|DT628860 EST1155430 Subtracted pine embryo li... 31 8.1
gb|DT631755.1|DT631755 EST1146686 Normalized pine embryo li... 31 8.1
gb|DT635711.1|DT635711 EST1150642 Normalized pine embryo li... 31 8.1
gb|DT636522.1|DT636522 EST1151453 Normalized pine embryo li... 31 8.1
gb|DT638650.1|DT638650 EST1153581 Normalized pine embryo li... 31 8.1
gb|DT639006.1|DT639006 EST1153937 Normalized pine embryo li... 31 8.1
>gb|DR694155.1|DR694155 EST1084245 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE875 3' end, mRNA sequence
Length = 781
Score = 80.3 bits (169), Expect(2) = 2e-022
Identities = 35/65 (53%), Positives = 41/65 (63%)
Frame = +2 / +2
Query: 353 SGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFN 532
S S C+AFL+N D A+V G SY LP WSVSILPDC+ V FNTA+V QTS
Sbjct: 122 SKGSSLCAAFLSNKDLKHAATVQFNGNSYQLPAWSVSILPDCKNVVFNTAKVSVQTSLMG 301
Query: 533 VESGS 547
+E S
Sbjct: 302 MEQVS 316
Score = 49.2 bits (101), Expect(2) = 4e-012
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = -1 / -2
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
+VC T AVLK T QSG +LTD G *+FP T A S+L RKA
Sbjct: 291 EVCTLTFAVLKTTFLQSGKILTDQAGS**EFPLNCTVAACLRSLLLRKA 145
Score = 45.1 bits (92), Expect(2) = 2e-022
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2 / +2
Query: 194 QPKWGHLKDLHAAIKLCESAL 256
QPKWGHLK+LH AIKL E AL
Sbjct: 2 QPKWGHLKELHKAIKLSEPAL 64
Score = 41.4 bits (84), Expect(2) = 4e-012
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1 / -2
Query: 258 VRADSQSLIAACRSFKCPHLGC 193
+RA S S IA C SF+CPH GC
Sbjct: 66 IRAGSLSFIALCNSFRCPHFGC 1
Score = 33.1 bits (66), Expect = 1.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 427 WKIL*STTMVCEHTTRL*NCGF*YSQG 507
WK+L +T +VC++ T L CG *+ +G
Sbjct: 196 WKLLSATCLVCQYLT*LQKCGL*HCKG 276
>gb|BE451756.1|BE451756 NXCI_001_H01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_001_H01 5' similar to Arabidopsis
thaliana sequence At2g32810 putative beta-galactosidase
(BGAL9) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 299
Score = 74.8 bits (157), Expect = 5e-013
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFL+N D H +V G +Y+LP WSVSILPDC+ VAFNTA++ Q++
Sbjct: 4 CAAFLSNSDAHSDTTVNFXGLTYNLPAWSVSILPDCKNVAFNTAKINVQSN 156
Score = 41.4 bits (84), Expect = 0.005
Identities = 23/42 (54%), Positives = 25/42 (59%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL AT QSGSMLTDH GRL P T +S+ RKA
Sbjct: 134 AVLNATFLQSGSMLTDHAGRLYVKPXKLTVVSE*ASLFDRKA 9
>gb|CV032807.1|CV032807 RTNACL1_18_A09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_A09_A029 5', mRNA sequence
Length = 760
Score = 74.4 bits (156), Expect = 6e-013
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLANI+ A+V G SY LP WSVSIL DC+ VAFNTA++ +QT+
Sbjct: 60 CAAFLANINTQSDATVKFNGNSYHLPAWSVSILSDCKNVAFNTAKISSQTT 212
Score = 43.2 bits (88), Expect = 0.002
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL AT QS MLTDH G+ *+FP T A C +LAR A
Sbjct: 190 AVLNATFLQSERMLTDHAGK**EFPLNFTVASDCVLILARNA 65
Score = 33.1 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1 / +2
Query: 370 LLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NCGF*Y 498
+ S SCQ+* T C W++L MVC+H L CG Y
Sbjct: 59 MCSISCQY*YTVRCNCEVQWELLSFACMVCQHPL*LQKCGVQY 187
>gb|BF186180.1|BF186180 NXCI_131_A07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_131_A07 5' similar to Arabidopsis
thaliana sequence At2g28470 beta-galactosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 303
Score = 73.9 bits (155), Expect = 9e-013
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFL+N D H +V G +Y+LP WSVSILPDC+ VAFNTA++ Q++
Sbjct: 4 CAAFLSNSDAHSDTTVNFQGLTYNLPAWSVSILPDCKNVAFNTAKINVQSN 156
Score = 39.6 bits (80), Expect = 0.019
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL AT QSGSMLTDH GRL
Sbjct: 134 AVLNATFLQSGSMLTDHAGRL 72
>gb|BF609491.1|BF609491 NXSI_043_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_043_C02 5' similar to Arabidopsis thaliana
sequence At2g28470 beta-galactosidase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 57.0 bits (118), Expect(3) = 1e-011
Identities = 25/48 (52%), Positives = 27/48 (56%)
Frame = +2 / +2
Query: 89 YMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAA 232
Y + G +GGP I SYDYDAPIDEYG Q LKDLH A
Sbjct: 173 YYMYYGGTTFGRSGGPFVIPSYDYDAPIDEYGFXXQRXXXXLKDLHVA 316
Score = 41.8 bits (85), Expect(2) = 3e-005
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAG 130
+ F +T G+ NYYMY+GGT F R+ G
Sbjct: 128 YAVAQFFATQGTFVNYYMYYGGTTFGRSGG 217
Score = 40.5 bits (82), Expect(2) = 2e-006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -1 / -1
Query: 231 AACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPP 127
A C+S + C PYSSIGAS*S*L + +GPP
Sbjct: 315 ATCKSLRXXXXRCXXKPYSSIGAS*S*LGMTNGPP 211
Score = 38.2 bits (77), Expect = 0.050
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3 / -3
Query: 226 M*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCP 119
M*+F++ LS IF+ WCI+II Y +W + P
Sbjct: 310 M*IFKVXXXTLSXKAIFIYWCIVIITWYDEWPSRSP 203
Score = 29.9 bits (59), Expect(2) = 2e-006
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 129 PAVRSKLVPPKYM**FCKLPHVDKN 55
P R +VPP YM**F +P V KN
Sbjct: 216 PPDRPNVVPP*YM**FTNVPCVAKN 142
Score = 25.4 bits (49), Expect(3) = 1e-011
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1 / +1
Query: 58 FINVGKLTKLLHVFWWN 108
F N + KLLHV W N
Sbjct: 145 FCNTRNIRKLLHVLWRN 195
Score = 24.4 bits (47), Expect(2) = 3e-005
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3 / +3
Query: 120 GQLVVHFR*LAMIMMHQLTNMVS*DNLSGGI*KTY 224
G L H MI MHQ NM DN+ K Y
Sbjct: 204 GDLEGHSSYQVMITMHQ*MNMALXDNVXXXTLKIY 308
Score = 21.7 bits (41), Expect(3) = 1e-011
Identities = 5/8 (62%), Positives = 6/8 (75%)
Frame = +2 / +1
Query: 32 RQCFCCCS 55
R C CCC+
Sbjct: 118 RYCICCCT 141
>gb|BQ290728.1|BQ290728 NXRV048_H02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV048_H02 5' similar to Arabidopsis thaliana
sequence At2g28470 beta-galactosidase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 753
Score = 60.6 bits (126), Expect = 9e-009
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +2 / +3
Query: 428 GKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
G SY LP WSVSILPDC+ VAFNTA++ +QT+
Sbjct: 18 GNSYHLPAWSVSILPDCKNVAFNTAKISSQTT 113
Score = 39.6 bits (80), Expect = 0.019
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -1 / -3
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFP 427
AVL AT QSG MLTDH G+ *+FP
Sbjct: 91 AVLNATFLQSGRMLTDHAGK**EFP 17
>gb|BQ655183.1|BQ655183 NXRV091_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV091_B10 5' similar to Arabidopsis thaliana
sequence At2g28470 beta-galactosidase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 60.6 bits (126), Expect = 9e-009
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +2 / +3
Query: 428 GKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
G SY LP WSVSILPDC+ VAFNTA++ +QT+
Sbjct: 18 GNSYHLPAWSVSILPDCKNVAFNTAKISSQTT 113
Score = 39.6 bits (80), Expect = 0.019
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFP 427
AVL AT QSG MLTDH G+ *+FP
Sbjct: 91 AVLNATFLQSGRMLTDHAGK**EFP 17
>gb|CD016484.1|CD016484 NXCI_050_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_050_B03 5' similar to Arabidopsis
thaliana sequence At1g45130 putative beta-galactosidase
emb|CAB64741.1; similar to ESTs gb|N96096.1,
gb|AW096565.1, gb|AI994624.1, gb|T42360.1, gb|AI100297.1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 182
Score = 41.4 bits (84), Expect(2) = 1e-006
Identities = 17/29 (58%), Positives = 17/29 (58%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTA 127
F FL GS NYYMY G TNF RTA
Sbjct: 96 FAVARFLVXXGSFVNYYMYHGXTNFARTA 182
Score = 28.6 bits (56), Expect(2) = 1e-006
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARF 59
G + P P +D AFAVARF
Sbjct: 57 GGATPRXPVEDLAFAVARF 113
Score = 28.6 bits (56), Expect(2) = 0.27
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1 / -2
Query: 126 AVRSKLVPPKYM**FCKLPHVDKNEQQQK 40
AVR+K V P YM**F K P K K
Sbjct: 181 AVRAKFVXPWYM**FTKDPXFTKKRATAK 95
Score = 23.1 bits (44), Expect(2) = 0.27
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3 / -2
Query: 58 KRATAKALS*AGLCGNDSP 2
KRATAKA S GL G P
Sbjct: 112 KRATAKARSSTGLRGVAPP 56
>gb|DR071505.1|DR071505 RTDK1_20_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_20_G05_A029 3', mRNA sequence
Length = 698
Score = 36.3 bits (73), Expect = 0.18
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2 / +2
Query: 431 FQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHV 309
F + +++H + H W+ KL T N K FH H HW ++
Sbjct: 461 FNQLQVQHRHCHNGWKWKLVWTRNVSKYFHCI*HNHWCDYI 583
>gb|AL749811.1|AL749811 AL749811 AS Pinus pinaster cDNA clone AS01C12, mRNA sequence
Length = 402
Score = 26.7 bits (52), Expect(2) = 0.65
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2 / -1
Query: 329 FHWNTHVPPAWA 294
FHWNTH+ W+
Sbjct: 81 FHWNTHLALLWS 46
Score = 24.9 bits (48), Expect(2) = 0.65
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2 / -3
Query: 389 WQEKLSKTVNFLKCFHLCGHFHWNTH 312
W + N L C H H HW+ H
Sbjct: 220 WVLQRKNGKNSLHCCHYYCH*HWHPH 143
>gb|BG040732.1|BG040732 NXSI_114_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_114_D10 5' similar to Arabidopsis thaliana
sequence At3g09140 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 28.1 bits (55), Expect(2) = 1.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 415 CY*CCCTHNTWEELQXKEIQYGVCHWCRLWKPPLGLT 305
Score = 22.1 bits (42), Expect(2) = 1.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 264 LHALIKICDAA 232
>gb|AY634333.1| Pinus echinata putative LEA protein (ifg8612) gene, partial cds
Length = 1325
Score = 29.5 bits (58), Expect(2) = 2.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 5 RIIAT*ACSRQCFCCC 52
RI++T CS C CCC
Sbjct: 540 RILSTGLCSPNCVCCC 587
Score = 23.1 bits (44), Expect(2) = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2 / +2
Query: 221 LHAAIKLCESALTAVDGSPHYVKLGPMQEAHVYSSEN 331
+H + CE + + +V G Q+ H YSS++
Sbjct: 1079 IHNCLIYCEQRNSVWNNCRSWVSEGE*QDRHDYSSDS 1189
>gb|BI397745.1|BI397745 NXPV_104_G10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_G10 5' similar to Arabidopsis
thaliana sequence At5g63810 beta-galactosidase
(emb|CAB64746.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 32.7 bits (65), Expect = 2.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 473 DCETVAFNTARVGTQTSXFNVESGS 547
DC+ V +NTAR+ QTS +E S
Sbjct: 3 DCKNVVYNTARISIQTSVMGMEQVS 77
>gb|DR100649.1|DR100649 STRR1_66_E06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_E06_A033 3', mRNA sequence
Length = 504
Score = 32.7 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2 / -3
Query: 131 HQLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPM 18
HQ A+NW N + + F L+K +S T+L RP+
Sbjct: 472 HQYMAENW*CPNRVSGNIFFDILVKLISS*ITILHRPI 359
>gb|CF668932.1|CF668932 RTCNT1_39_C02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C02_A029 5', mRNA sequence
Length = 374
Score = 27.2 bits (53), Expect(2) = 2.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 212 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 102
Score = 22.1 bits (42), Expect(2) = 2.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 61 LHALIKICDAA 29
>gb|CF395421.1|CF395421 RTDS2_11_B12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_B12_A021 5', mRNA sequence
Length = 696
Score = 29.5 bits (58), Expect(2) = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 5 RIIAT*ACSRQCFCCC 52
RI++T CS C CCC
Sbjct: 56 RILSTGLCSPNCVCCC 103
Score = 21.7 bits (41), Expect(2) = 3.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2 / +3
Query: 221 LHAAIKLCESALTAVDGSPHYVKLGPMQEAHVYSSEN 331
+H + CE + + +V G Q+ H YSS++
Sbjct: 567 IHNWLIYCEQRNSVWNNCRSWVSEGE*QDRHDYSSDS 677
>gb|BQ290447.1|BQ290447 NXRV046_D05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV046_D05 5', mRNA sequence
Length = 553
Score = 32.2 bits (64), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTW 70
CFC CSF+STW
Sbjct: 275 CFCLCSFISTW 243
>gb|CV032764.1|CV032764 RTNACL1_18_E06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_E06_A029 3', mRNA sequence
Length = 820
Score = 32.2 bits (64), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 573 QRSRLKRMAPHKHWITEFSSLTNLGRRYHLGMIFHCN 463
>gb|DR160510.1|DR160510 RTFE1_6_A07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_6_A07_A029 5', mRNA sequence
Length = 921
Score = 32.2 bits (64), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 128 QLSAQNWFHQNTCNNFVSFPTL 63
QLSA +W N+C+ VS PT+
Sbjct: 80 QLSAASWLEDNSCSLLVSIPTI 15
>gb|DR387382.1|DR387382 RTHG1_21_H06.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_H06_A029 3', mRNA sequence
Length = 574
Score = 32.2 bits (64), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2 / -2
Query: 131 HQLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPM 18
HQ A+NW N + + F L+K +S T+L RP+
Sbjct: 519 HQYMAKNW*CPNRVSGNIFFDILVKLISS*ITILHRPI 406
>gb|CX652968.1|CX652968 COLD1_62_C11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_C11_A029 5', mRNA sequence
Length = 907
Score = 27.2 bits (53), Expect(2) = 3.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 472 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 362
Score = 22.1 bits (42), Expect(2) = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 321 LHALIKICDAA 289
>gb|CF397774.1|CF397774 RTDS3_1_E09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_E09_A022 5', mRNA sequence
Length = 875
Score = 27.2 bits (53), Expect(2) = 3.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 209 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 99
Score = 22.1 bits (42), Expect(2) = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 58 LHALIKICDAA 26
>gb|DR012538.1|DR012538 HEAT1_13_B02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_B02_A029 5', mRNA sequence
Length = 817
Score = 27.2 bits (53), Expect(2) = 3.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 215 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 105
Score = 22.1 bits (42), Expect(2) = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 64 LHALIKICDAA 32
>gb|CO361072.1|CO361072 NDL2_2_C01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_C01_A029 5', mRNA sequence
Length = 809
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 403 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 293
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 252 LHALIKICDAA 220
>gb|CV031806.1|CV031806 RTNACL1_3_G04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_G04_A029 5', mRNA sequence
Length = 808
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 413 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 303
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 262 LHALIKICDAA 230
>gb|CX650284.1|CX650284 COLD1_44_E01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_E01_A029 5', mRNA sequence
Length = 807
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 417 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 307
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 266 LHALIKICDAA 234
>gb|CO361081.1|CO361081 NDL2_2_D01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_D01_A029 5', mRNA sequence
Length = 798
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 403 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 293
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 252 LHALIKICDAA 220
>gb|DR013618.1|DR013618 HEAT1_20_A03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_A03_A029 5', mRNA sequence
Length = 798
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 410 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 300
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 259 LHALIKICDAA 227
>gb|DR057974.1|DR057974 RTNIT1_8_H10.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_H10_A029 5', mRNA sequence
Length = 796
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 401 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 291
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 250 LHALIKICDAA 218
>gb|CO366590.1|CO366590 RTK1_28_G01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_G01_A029 5', mRNA sequence
Length = 786
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 438 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 328
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 287 LHALIKICDAA 255
>gb|DR181754.1|DR181754 RTMNUT1_40_G01.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_G01_A029 5', mRNA sequence
Length = 787
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 380 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 270
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 229 LHALIKICDAA 197
>gb|CO368698.1|CO368698 RTK1_42_F05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_F05_A029 3', mRNA sequence
Length = 784
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 529 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 639
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 680 LHALIKICDAA 712
>gb|CO366279.1|CO366279 RTK1_26_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_H10_A029 5', mRNA sequence
Length = 781
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 379 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 269
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 228 LHALIKICDAA 196
>gb|DR060363.1|DR060363 RTNIT1_27_H04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_H04_A029 3', mRNA sequence
Length = 774
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 365 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 475
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 516 LHALIKICDAA 548
>gb|CF474717.1|CF474717 RTWW2_7_H03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_7_H03_A021 5', mRNA sequence
Length = 764
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 374 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 264
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 223 LHALIKICDAA 191
>gb|CF478408.1|CF478408 RTWW3_18_D06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_D06_A022 5', mRNA sequence
Length = 762
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 407 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 297
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 256 LHALIKICDAA 224
>gb|CV033787.1|CV033787 RTNACL1_36_D04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_D04_A029 5', mRNA sequence
Length = 761
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 420 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 310
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 269 LHALIKICDAA 237
>gb|CX652811.1|CX652811 COLD1_61_D04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_D04_A029 5', mRNA sequence
Length = 753
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 446 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 336
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 295 LHALIKICDAA 263
>gb|CF665034.1|CF665034 RTCNT1_13_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_A11_A029 5', mRNA sequence
Length = 741
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 398 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 288
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 247 LHALIKICDAA 215
>gb|DR058133.1|DR058133 RTNIT1_9_H12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_9_H12_A029 5', mRNA sequence
Length = 733
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 377 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 267
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 226 LHALIKICDAA 194
>gb|CO175315.1|CO175315 NDL1_53_H01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_H01_A029 5', mRNA sequence
Length = 728
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 405 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 295
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 254 LHALIKICDAA 222
>gb|CO201547.1|CO201547 RTCNT2_6_B08.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_B08_A029 5', mRNA sequence
Length = 727
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 387 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 277
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 236 LHALIKICDAA 204
>gb|CV036217.1|CV036217 RTNACL1_57_C03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_C03_A029 5', mRNA sequence
Length = 712
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 368 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 258
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 217 LHALIKICDAA 185
>gb|DR012882.1|DR012882 HEAT1_15_C10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C10_A029 5', mRNA sequence
Length = 710
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 375 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 265
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 224 LHALIKICDAA 192
>gb|DR179684.1|DR179684 RTMNUT1_23_E10.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_E10_A029 5', mRNA sequence
Length = 705
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 398 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 288
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 247 LHALIKICDAA 215
>gb|CF474084.1|CF474084 RTWW2_18_B02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_B02_A021 5', mRNA sequence
Length = 688
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 399 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 289
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 248 LHALIKICDAA 216
>gb|CF477695.1|CF477695 RTWW3_9_G06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_G06_A022 5', mRNA sequence
Length = 666
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 377 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 267
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 226 LHALIKICDAA 194
>gb|CV031558.1|CV031558 RTNACL1_2_G05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G05_A029 3', mRNA sequence
Length = 666
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / +3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 270 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 380
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 421 LHALIKICDAA 453
>gb|CF388592.1|CF388592 RTDR2_4_D04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_D04_A021 5', mRNA
sequence
Length = 664
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 420 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 310
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 269 LHALIKICDAA 237
>gb|CX716092.1|CX716092 RTPQ1_40_C07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_40_C07_A032 5', mRNA sequence
Length = 653
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 401 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 291
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 250 LHALIKICDAA 218
>gb|AI725060.1|AI725060 959 PtIFG2 Pinus taeda cDNA clone 8856r, mRNA sequence
Length = 648
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 381 CY*CCCTHNTWKELQVKEIQYGVCHWCRLWKPPLGLT 271
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 230 LHALIKICDAA 198
>gb|CF665681.1|CF665681 RTCNT1_17_E04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_17_E04_A029 5', mRNA sequence
Length = 635
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 377 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 267
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 226 LHALIKICDAA 194
>gb|DR179378.1|DR179378 RTMNUT1_21_F04.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_F04_A029 5', mRNA sequence
Length = 597
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 380 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 270
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 229 LHALIKICDAA 197
>gb|CO159248.1|CO159248 FLD1_12_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_A03_A029 5', mRNA sequence
Length = 593
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 448 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 338
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 297 LHALIKICDAA 265
>gb|DR047511.1|DR047511 RTBOR1_1_B08.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_1_B08_A029 5', mRNA sequence
Length = 590
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -3
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 408 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 298
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 257 LHALIKICDAA 225
>gb|CO175316.1|CO175316 NDL1_53_H03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_H03_A029 5', mRNA sequence
Length = 587
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -2
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 415 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 305
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 264 LHALIKICDAA 232
>gb|DR169083.1|DR169083 RTPHOS1_29_H10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_29_H10_A029 5', mRNA sequence
Length = 587
Score = 27.2 bits (53), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2 / -1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQIT 148
C+ CC +TW LQ + +G ++ R PL +T
Sbjct: 410 CY*CCCTHNTWEELQVKEIQYGVCHWCRLWKPPLGLT 300
Score = 22.1 bits (42), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 221 LHAAIKLCESA 253
LHA IK+C++A
Sbjct: 259 LHALIKICDAA 227
>gb|DR163284.1|DR163284 RTFE1_42_B04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_B04_A029 3', mRNA sequence
Length = 891
Score = 24.9 bits (48), Expect(2) = 4.5
Identities = 9/33 (27%), Positives = 12/33 (36%)
Frame = +2 / +1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTNFERTAGGP 136
C CCC W ++ N G +G P
Sbjct: 505 CCCCCRCCCCWAAILNLNKISGSHAVPLDSGEP 603
Score = 24.0 bits (46), Expect(2) = 4.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 23 ACSRQCFCCC 52
AC +C CCC
Sbjct: 481 ACCARCCCCC 510
>gb|CF392212.1|CF392212 RTDR3_8_F01.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_8_F01_A022 5', mRNA
sequence
Length = 403
Score = 30.9 bits (61), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2 / +3
Query: 329 NVHTNGSISGNSQFCSAFLANIDEHKYASVW 421
N++ NGS QF F +D H Y+ +W
Sbjct: 246 NIYVNGSADKEQQFYLWFDPTVDFHNYSILW 338
>gb|DR013179.1|DR013179 HEAT1_17_C05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_C05_A029 5', mRNA sequence
Length = 406
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 196 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 306
>gb|DR018232.1|DR018232 STRS1_21_A02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_21_A02_A034 5', mRNA sequence
Length = 751
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 174 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 284
>gb|DR018402.1|DR018402 STRS1_22_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_E12_A034 5', mRNA sequence
Length = 779
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 165 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 275
>gb|DR051609.1|DR051609 RTBOR1_31_E07.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_31_E07_A029 3', mRNA sequence
Length = 270
Score = 30.9 bits (61), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 131 HQLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPM 18
HQ A+NW + + + F L+K +S T+L RP+
Sbjct: 258 HQYMAENW*CPDRVSGNIFFDILVKLISS*ITILQRPI 145
>gb|DR078160.1|DR078160 RTFEPL1_2_G02.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_2_G02_A029 3', mRNA sequence
Length = 774
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 542 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 432
>gb|DR080949.1|DR080949 RTFEPL1_26_G10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_G10_A029 3', mRNA sequence
Length = 748
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 635 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 525
>gb|DR081194.1|DR081194 RTFEPL1_28_C03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_28_C03_A029 3', mRNA sequence
Length = 762
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 651 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 541
>gb|DR097235.1|DR097235 STRR1_33_A04.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_A04_A033 5', mRNA sequence
Length = 849
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 350 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 460
>gb|DR097236.1|DR097236 STRR1_33_A05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_A05_A033 5', mRNA sequence
Length = 827
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 350 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 460
>gb|DR160720.1|DR160720 RTFE1_7_D11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_7_D11_A029 5', mRNA sequence
Length = 873
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 182 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 292
>gb|DR168566.1|DR168566 RTPHOS1_26_H02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_26_H02_A029 3', mRNA sequence
Length = 705
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 468 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 358
>gb|DR387411.1|DR387411 RTHG1_21_C07.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_C07_A029 5', mRNA sequence
Length = 617
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 213 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 323
>gb|DR388829.1|DR388829 RTHG1_30_E10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_30_E10_A029 5', mRNA sequence
Length = 789
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 204 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 314
>gb|DR682661.1|DR682661 EST1072736 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB36 3' end, mRNA sequence
Length = 707
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 236 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 346
>gb|DR684156.1|DR684156 EST1074233 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP51 3' end, mRNA sequence
Length = 873
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 281 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 391
>gb|DR691127.1|DR691127 EST1081213 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD459 3' end, mRNA sequence
Length = 585
Score = 30.9 bits (61), Expect = 8.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -1
Query: 329 FHWNTHVPPAWA 294
F WNTH+ PAWA
Sbjct: 372 FFWNTHLAPAWA 337
>gb|DR691875.1|DR691875 EST1081962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADE94 3' end, mRNA sequence
Length = 702
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 242 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 352
>gb|DR694663.1|DR694663 EST1084755 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF32 3' end, mRNA sequence
Length = 755
Score = 30.9 bits (61), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -3
Query: 359 FLKCFHLCGHFHWNTHVPP 303
FL F+ C H H TH+PP
Sbjct: 699 FLLTFNSCHHLHLTTHLPP 643
>gb|DR694691.1|DR694691 EST1084783 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF64 3' end, mRNA sequence
Length = 756
Score = 30.9 bits (61), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -2
Query: 359 FLKCFHLCGHFHWNTHVPP 303
FL F+ C H H TH+PP
Sbjct: 701 FLLTFNSCHHLHLTTHLPP 645
>gb|DR695151.1|DR695151 EST1085244 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEL14 3' end, mRNA sequence
Length = 870
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 241 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 351
>gb|DT627784.1|DT627784 EST1156533 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ59 5' end, mRNA sequence
Length = 752
Score = 30.9 bits (61), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3 / -2
Query: 294 GPCRRHMCIPVKMSTQMEAFQEI 362
G CR+H C+PVK + F++I
Sbjct: 103 GSCRKHTCLPVKAKIA*QLFRKI 35
>gb|DT628860.1|DT628860 EST1155430 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD282 5' end, mRNA sequence
Length = 912
Score = 30.9 bits (61), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1 / -3
Query: 378 AEQNCEFPEMLPFVWTFSLEYTCASC 301
A NC PE LPF + ++C SC
Sbjct: 82 AHTNCRLPEPLPFYYARE*LFSCKSC 5
>gb|DT631755.1|DT631755 EST1146686 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFC32 3' end, mRNA sequence
Length = 837
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 289 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 399
>gb|DT635711.1|DT635711 EST1150642 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGJ76 3' end, mRNA sequence
Length = 819
Score = 30.9 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 428 QKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWN 318
Q+SRLK + H+ W + S N + +HL FH N
Sbjct: 267 QRSRLKRMAPHKHWITEFSSLRNLGRRYHLGMIFHCN 377
>gb|DT636522.1|DT636522 EST1151453 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS77 3' end, mRNA sequence
Length = 728
Score = 30.9 bits (61), Expect = 8.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 329 FHWNTHVPPAWA 294
F WNTH+ PAWA
Sbjct: 540 FFWNTHLAPAWA 505
>gb|DT638650.1|DT638650 EST1153581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH72 3' end, mRNA sequence
Length = 817
Score = 30.9 bits (61), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -3
Query: 359 FLKCFHLCGHFHWNTHVPP 303
FL F+ C H H TH+PP
Sbjct: 707 FLLTFNSCHHLHLTTHLPP 651
>gb|DT639006.1|DT639006 EST1153937 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHM01 3' end, mRNA sequence
Length = 847
Score = 30.9 bits (61), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -1
Query: 359 FLKCFHLCGHFHWNTHVPP 303
FL F+ C H H TH+PP
Sbjct: 709 FLLTFNSCHHLHLTTHLPP 653
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 362,538,018
Number of Sequences: 355925
Number of extensions: 5757939
Number of successful extensions: 59522
Number of sequences better than 10.0: 102
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7815394080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)