TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA 175 5e-061
dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA... 172 3e-060
gb|CV728274.1|CV728274 14Salt--06-O10.b1 Salt treated rice ... 126 3e-045
gb|AACV01018569.1| Oryza sativa (japonica cultivar-group) c... 84 3e-044
dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chro... 84 8e-042
dbj|AP004703.3| Oryza sativa (japonica cultivar-group) geno... 84 3e-041
dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA... 110 1e-030
ref|NM_191361.1| Oryza sativa (japonica cultivar-group), p... 110 1e-030
gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA ... 105 6e-029
dbj|AK101220.1| Oryza sativa (japonica cultivar-group) cDNA... 115 1e-028
ref|XM_464326.1| Oryza sativa (japonica cultivar-group), mRNA 115 1e-028
dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA... 97 3e-025
gb|AACV01003484.1| Oryza sativa (japonica cultivar-group) c... 65 8e-022
>ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1043
Score = 175 bits (376), Expect(2) = 5e-061
Identities = 76/130 (58%), Positives = 86/130 (66%)
Frame = +1 / +2
Query: 307 SAAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAA 486
+ G +ASF E+F+RESEAVQ+KAGRYQSLQEIPFF +RVP LAPPYNFT++LY AA
Sbjct: 278 AGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAA 457
Query: 487 XSVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVAXXXXX 666
VNVNDAIWSMYF+ELLP L K GDDGNYA S NY YVA
Sbjct: 458 ALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFI 637
Query: 667 XXXXXXTSLI 696
T+LI
Sbjct: 638 GDQQNYTTLI 667
Score = 116 bits (248), Expect(2) = 5e-037
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = -3 / -2
Query: 651 CYVXXVVXXX*XXXKXXKICIXSYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQ 472
C++ +V * + KI S +VAIIA L REQL+E+HAPYG+++++* G IQ
Sbjct: 622 CHIPPIVDPS*ECLQTYKI**NSCSIVAIIAILGQEREQLIEIHAPYGIIHIN*CGCRIQ 443
Query: 471 IACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 343
+ CEV+WR Q R+S EE NLL ALVPS LGLN LGLA E L
Sbjct: 442 LGCEVIWRCQCERHSEREERNLLQALVPSCLGLNRLGLAHEHL 314
Score = 111 bits (236), Expect(2) = 4e-034
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = -1 / -3
Query: 527 KYMLHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*TASDSRMK 348
KYMLHMAS TLT AA Y S+VKLYGGA +GTL K GISCRLWYLPAL *TASDSR
Sbjct: 498 KYMLHMASFTLTNAAAEYSSVVKLYGGANVKGTLKGKKGISCRLWYLPALA*TASDSRTN 319
Query: 347 SSTKEA 330
S KEA
Sbjct: 318 ISAKEA 301
Score = 84.0 bits (177), Expect(2) = 5e-061
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / +2
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLTREEDT+VF LIERAK+P
Sbjct: 65 QAAMAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHP 244
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 245 RNTPAYDPGYLAGG 286
Score = 62.5 bits (130), Expect(2) = 5e-037
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / -2
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 238 LGPLDEAEHDGVLLPREELPHRVQAQP 158
Score = 59.7 bits (124), Expect(3) = 2e-025
Identities = 27/40 (67%), Positives = 29/40 (72%)
Frame = +3 / +1
Query: 357 RVRGRSVQGRKVPKPTGDSILRLQSSFCSGASIQLHKRSV 476
RVRG S QGRKVPKP GDS L QS+F G SI LH R+V
Sbjct: 328 RVRGGSGQGRKVPKPAGDSFLPFQSAFHIGTSI*LHNRAV 447
Score = 58.3 bits (121), Expect(2) = 4e-034
Identities = 33/60 (55%), Positives = 35/60 (58%)
Frame = -1 / -3
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRPVSTTTMVHR 138
P A GS*AG L G LA SMR NT VSSS VR SLTVSRLSP + S + R
Sbjct: 285 PPAR*PGS*AGVLRGCLARSMRPNTTVSSSLVRNSLTVSRLSPLHSRSSSSASVALQMSR 106
Score = 55.1 bits (114), Expect(3) = 2e-025
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3 / +1
Query: 186 RRAQPGHGEGLPDAGGGHHCVQPHREGQ 269
+RA+PGHGEG+P GGGH V+PHR GQ
Sbjct: 154 QRAEPGHGEGVPHEGGGHRRVRPHRAGQ 237
Score = 42.8 bits (87), Expect(3) = 2e-025
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +3 / +1
Query: 510 HMEHVLRRAAPSAX*XWR*WQLRRSX*CRSCXSSXXFXXXQL 635
HMEHV + APS WR*WQL + RSC S+ QL
Sbjct: 481 HMEHVFQ*VAPSPGQEWR*WQLCCNCFIRSCMSAGTLKKDQL 606
>dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027D10, full
insert sequence
Length = 1043
Score = 172 bits (371), Expect(2) = 3e-060
Identities = 75/130 (57%), Positives = 86/130 (66%)
Frame = +1 / +2
Query: 307 SAAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAA 486
+ G +ASF E+F+RESEAVQ+KAGRYQSLQEIPFF +RVP LAPPYNFT++LY AA
Sbjct: 278 AGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAA 457
Query: 487 XSVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVAXXXXX 666
VNVNDAIWSMYF+ELLP L K G+DGNYA S NY YVA
Sbjct: 458 ALVNVNDAIWSMYFNELLPLLAKNGNDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFI 637
Query: 667 XXXXXXTSLI 696
T+LI
Sbjct: 638 GDQQNYTTLI 667
Score = 116 bits (248), Expect(2) = 5e-037
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = -3 / -2
Query: 651 CYVXXVVXXX*XXXKXXKICIXSYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQ 472
C++ +V * + KI S +VAIIA L REQL+E+HAPYG+++++* G IQ
Sbjct: 622 CHIPPIVDPS*ECLQTYKI**NSCSIVAIIAILGQEREQLIEIHAPYGIIHIN*CGCRIQ 443
Query: 471 IACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 343
+ CEV+WR Q R+S EE NLL ALVPS LGLN LGLA E L
Sbjct: 442 LGCEVIWRCQCERHSEREERNLLQALVPSCLGLNRLGLAHEHL 314
Score = 111 bits (236), Expect(2) = 4e-034
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = -1 / -3
Query: 527 KYMLHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*TASDSRMK 348
KYMLHMAS TLT AA Y S+VKLYGGA +GTL K GISCRLWYLPAL *TASDSR
Sbjct: 498 KYMLHMASFTLTNAAAEYSSVVKLYGGANVKGTLKGKKGISCRLWYLPALA*TASDSRTN 319
Query: 347 SSTKEA 330
S KEA
Sbjct: 318 ISAKEA 301
Score = 84.0 bits (177), Expect(2) = 3e-060
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / +2
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLTREEDT+VF LIERAK+P
Sbjct: 65 QAAMAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHP 244
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 245 RNTPAYDPGYLAGG 286
Score = 62.5 bits (130), Expect(2) = 5e-037
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / -2
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 238 LGPLDEAEHDGVLLPREELPHRVQAQP 158
Score = 59.7 bits (124), Expect(3) = 7e-025
Identities = 27/40 (67%), Positives = 29/40 (72%)
Frame = +3 / +1
Query: 357 RVRGRSVQGRKVPKPTGDSILRLQSSFCSGASIQLHKRSV 476
RVRG S QGRKVPKP GDS L QS+F G SI LH R+V
Sbjct: 328 RVRGGSGQGRKVPKPAGDSFLPFQSAFHIGTSI*LHNRAV 447
Score = 58.3 bits (121), Expect(2) = 4e-034
Identities = 33/60 (55%), Positives = 35/60 (58%)
Frame = -1 / -3
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRPVSTTTMVHR 138
P A GS*AG L G LA SMR NT VSSS VR SLTVSRLSP + S + R
Sbjct: 285 PPAR*PGS*AGVLRGCLARSMRPNTTVSSSLVRNSLTVSRLSPLHSRSSSSASVALQMSR 106
Score = 55.1 bits (114), Expect(3) = 7e-025
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3 / +1
Query: 186 RRAQPGHGEGLPDAGGGHHCVQPHREGQ 269
+RA+PGHGEG+P GGGH V+PHR GQ
Sbjct: 154 QRAEPGHGEGVPHEGGGHRRVRPHRAGQ 237
Score = 40.9 bits (83), Expect(3) = 7e-025
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3 / +1
Query: 510 HMEHVLRRAAPSAX*XWR*WQLRRSX*CRSCXSSXXFXXXQL 635
HMEHV + APS W+*WQL + RSC S+ QL
Sbjct: 481 HMEHVFQ*VAPSPGQEWQ*WQLCCNCFIRSCMSAGTLKKDQL 606
>gb|CV728274.1|CV728274 14Salt--06-O10.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-O10, mRNA sequence
Length = 539
Score = 126 bits (269), Expect(2) = 3e-045
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = +1 / +3
Query: 307 SAAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAA 486
+ G +ASF E+F+RESEAVQ+KAGRYQSLQEIPFF +RVP LAPPYNFT++LY AA
Sbjct: 327 AGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAA 506
Query: 487 XSVNVNDAIWS 519
VNVNDAIWS
Sbjct: 507 ALVNVNDAIWS 539
Score = 103 bits (219), Expect(2) = 4e-033
Identities = 46/63 (73%), Positives = 48/63 (76%)
Frame = -1 / -2
Query: 518 LHMASLTLTXXAAGYRSLVKLYGGARAEGTL*AKNGISCRLWYLPALD*TASDSRMKSST 339
LHMAS TLT AA Y S+VKLYGGA +GTL K GISCRLWYLPAL *TASDSR S
Sbjct: 538 LHMASFTLTNAAAEYSSVVKLYGGANVKGTLKGKKGISCRLWYLPALA*TASDSRTNISA 359
Query: 338 KEA 330
KEA
Sbjct: 358 KEA 350
Score = 82.6 bits (174), Expect(2) = 6e-026
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = -3 / -1
Query: 519 APYGVVNVD*XGSGIQIACEVVWRRQSRRNSVSEEWNLL*ALVPSGLGLNGLGLADEEL 343
APYG+++++* G IQ+ CEV+WR Q R+S EE NLL ALVPS LGLN LGLA E L
Sbjct: 539 APYGIIHIN*CGCRIQLGCEVIWRCQCERHSEREERNLLQALVPSCLGLNRLGLAHEHL 363
Score = 80.3 bits (169), Expect(2) = 3e-045
Identities = 39/74 (52%), Positives = 47/74 (63%)
Frame = +1 / +3
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLT EEDT+VF LIERAK+P
Sbjct: 114 QAAMAAAMILSCRYLLICSATLALLLLLLCSGLSLDTVREFLTGEEDTVVFGLIERAKHP 293
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 294 RNTPAYDPGYLAGG 335
Score = 62.5 bits (130), Expect(2) = 4e-033
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / -1
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 287 LGPLDEAEHDGVLLPREELPHRVQAQP 207
Score = 59.3 bits (123), Expect(2) = 6e-026
Identities = 33/60 (55%), Positives = 35/60 (58%)
Frame = -1 / -2
Query: 317 PAAEWRGS*AGRLSGYLALSMRLNTMVSSSRVRKSLTVSRLSPAVDGDTRPVSTTTMVHR 138
P A GS*AG L G LA SMR NT VSSS VR SLTVSRLSP + S + R
Sbjct: 334 PPAR*PGS*AGVLRGCLARSMRPNTTVSSSPVRNSLTVSRLSPLHSNSSSSASVALQMSR 155
>gb|AACV01018569.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018569, whole
genome shotgun sequence
Length = 14799
Score = 84.0 bits (177), Expect(4) = 3e-044
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / -1
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLTREEDT+VF LIERAK+P
Sbjct: 11796 QAAMAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHP 11617
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 11616 RNTPAYDPGYLAGG 11575
Score = 73.0 bits (153), Expect(4) = 3e-044
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +1 / -2
Query: 469 DLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYA 579
+LY AA VNVNDAIWSMYF+ELLP L K GDDGNYA
Sbjct: 10388 ELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYA 10278
Score = 63.4 bits (132), Expect(4) = 3e-044
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1 / -1
Query: 379 KAGRYQSLQEIPFFAYRVPSALAPPYNFTS 468
+AGRYQSLQEIPFF +RVP LAPPYNFT+
Sbjct: 10581 QAGRYQSLQEIPFFPFRVPFTLAPPYNFTT 10492
Score = 62.5 bits (130), Expect(3) = 9e-027
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / +1
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 11623 LGPLDEAEHDGVLLPREELPHRVQAQP 11703
Score = 57.9 bits (120), Expect(3) = 9e-027
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 470 SLVKLYGGARAEGTL*AKNGISCRLWYLPA 381
++VKLYGGA +GTL K GISCRLWYLPA
Sbjct: 10490 TVVKLYGGANVKGTLKGKKGISCRLWYLPA 10579
Score = 53.8 bits (111), Expect(3) = 9e-027
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = -3 / +3
Query: 585 SYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQI 469
S +VAIIA L REQL+E+HAPYG+++++* G IQ+
Sbjct: 10272 SCSIVAIIAILGQEREQLIEIHAPYGIIHIN*CGCRIQL 10388
Score = 35.4 bits (71), Expect(4) = 3e-044
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / -1
Query: 307 SAAGRRLNASFVELFIRESEAVQSK 381
+ G +ASF E+F+RESEAVQ+K
Sbjct: 11583 AGGGHGHDASFAEMFVRESEAVQAK 11509
>dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1244_D07,
*** SEQUENCING IN PROGRESS ***
Length = 104295
Score = 84.0 bits (177), Expect(4) = 8e-042
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / +2
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLTREEDT+VF LIERAK+P
Sbjct: 20381 QAAMAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHP 20560
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 20561 RNTPAYDPGYLAGG 20602
Score = 73.0 bits (153), Expect(4) = 8e-042
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +1 / +3
Query: 469 DLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYA 579
+LY AA VNVNDAIWSMYF+ELLP L K GDDGNYA
Sbjct: 21789 ELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYA 21899
Score = 63.4 bits (132), Expect(4) = 8e-042
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1 / +2
Query: 379 KAGRYQSLQEIPFFAYRVPSALAPPYNFTS 468
+AGRYQSLQEIPFF +RVP LAPPYNFT+
Sbjct: 21596 QAGRYQSLQEIPFFPFRVPFTLAPPYNFTT 21685
Score = 62.5 bits (130), Expect(3) = 4e-025
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / -3
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 20554 LGPLDEAEHDGVLLPREELPHRVQAQP 20474
Score = 57.9 bits (120), Expect(3) = 4e-025
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -1 / -1
Query: 470 SLVKLYGGARAEGTL*AKNGISCRLWYLPA 381
++VKLYGGA +GTL K GISCRLWYLPA
Sbjct: 21687 TVVKLYGGANVKGTLKGKKGISCRLWYLPA 21598
Score = 53.8 bits (111), Expect(3) = 4e-025
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = -3 / -2
Query: 585 SYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQI 469
S +VAIIA L REQL+E+HAPYG+++++* G IQ+
Sbjct: 21905 SCSIVAIIAILGQEREQLIEIHAPYGIIHIN*CGCRIQL 21789
Score = 35.4 bits (71), Expect(4) = 8e-042
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 307 SAAGRRLNASFVELFIRESEAVQSK 381
+ G +ASF E+F+RESEAVQ+K
Sbjct: 20594 AGGGHGHDASFAEMFVRESEAVQAK 20668
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0528B09
Length = 156897
Score = 84.0 bits (177), Expect(4) = 3e-041
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +1 / +1
Query: 97 ETAMAVRAIHTPLLLCTMVVVLTGLVSPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYP 276
+ AMA I + L L L+ +GLSLDTVR+FLTREEDT+VF LIERAK+P
Sbjct: 120292 QAAMAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHP 120471
Query: 277 LNRPAYDPLHSAAG 318
N PAYDP + A G
Sbjct: 120472 RNTPAYDPGYLAGG 120513
Score = 73.0 bits (153), Expect(4) = 3e-041
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 469 DLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYA 579
+LY AA VNVNDAIWSMYF+ELLP L K GDDGNYA
Sbjct: 121700 ELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYA 121810
Score = 63.4 bits (132), Expect(4) = 3e-041
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1 / +1
Query: 379 KAGRYQSLQEIPFFAYRVPSALAPPYNFTS 468
+AGRYQSLQEIPFF +RVP LAPPYNFT+
Sbjct: 121507 QAGRYQSLQEIPFFPFRVPFTLAPPYNFTT 121596
Score = 62.5 bits (130), Expect(3) = 9e-025
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / -1
Query: 270 LGPLDEAEHNGVLLPRQEVPHRVQAEP 190
LGPLDEAEH+GVLLPR+E+PHRVQA+P
Sbjct: 120465 LGPLDEAEHDGVLLPREELPHRVQAQP 120385
Score = 57.9 bits (120), Expect(3) = 9e-025
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -1 / -2
Query: 470 SLVKLYGGARAEGTL*AKNGISCRLWYLPA 381
++VKLYGGA +GTL K GISCRLWYLPA
Sbjct: 121598 TVVKLYGGANVKGTLKGKKGISCRLWYLPA 121509
Score = 53.8 bits (111), Expect(3) = 9e-025
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = -3 / -3
Query: 585 SYGVVAIIAXLXXPREQLVEVHAPYGVVNVD*XGSGIQI 469
S +VAIIA L REQL+E+HAPYG+++++* G IQ+
Sbjct: 121816 SCSIVAIIAILGQEREQLIEIHAPYGIIHIN*CGCRIQL 121700
Score = 35.4 bits (71), Expect(4) = 3e-041
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 307 SAAGRRLNASFVELFIRESEAVQSK 381
+ G +ASF E+F+RESEAVQ+K
Sbjct: 120505 AGGGHGHDASFAEMFVRESEAVQAK 120579
>dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N13, full
insert sequence
Length = 1250
Score = 110 bits (235), Expect(2) = 1e-030
Identities = 46/108 (42%), Positives = 59/108 (54%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + + GRY+S E PFF +P L PP + L+P A S+N+N
Sbjct: 418 DGSLVEFMVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININK 597
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW MYFDELLPRL K G DGNY S +Y +VA
Sbjct: 598 EIWKMYFDELLPRLVKEGSDGNYGSSALCDTICLQALSKRIHYGKFVA 741
Score = 46.9 bits (96), Expect(2) = 1e-030
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD +R L R+ED+I+FSL+ERA++ N YD
Sbjct: 286 LTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYD 390
>ref|NM_191361.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 885
Score = 110 bits (235), Expect(2) = 1e-030
Identities = 46/108 (42%), Positives = 59/108 (54%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + + GRY+S E PFF +P L PP + L+P A S+N+N
Sbjct: 271 DGSLVEFMVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININK 450
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW MYFDELLPRL K G DGNY S +Y +VA
Sbjct: 451 EIWKMYFDELLPRLVKEGSDGNYGSSALCDTICLQALSKRIHYGKFVA 594
Score = 46.9 bits (96), Expect(2) = 1e-030
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD +R L R+ED+I+FSL+ERA++ N YD
Sbjct: 139 LTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYD 243
>gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040012000_PLATE_H10_80_091.ab1 similar to putative
chorismate mutase precursor [Oryza sativa, mRNA sequence
Length = 653
Score = 105 bits (223), Expect(2) = 6e-029
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +1 / +2
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + + GRY+S E PFF +P L PP + L+P A S+N+N
Sbjct: 359 DGSLVEFMVRETEXLHQQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININX 538
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
IW MYFDELLPRL K G DG Y
Sbjct: 539 EIWXMYFDELLPRLVKEGSDGXY 607
Score = 46.9 bits (96), Expect(2) = 6e-029
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD +R L R+ED+I+FSL+ERA++ N YD
Sbjct: 227 LTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYD 331
>dbj|AK101220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C20, full
insert sequence
Length = 1435
Score = 115 bits (246), Expect(2) = 1e-028
Identities = 51/123 (41%), Positives = 68/123 (55%)
Frame = +1 / +3
Query: 283 RPAYDPLHSAAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNF 462
RP P ++AA S E F+RE+E + +KAG+YQ +++PFF +PS L P ++
Sbjct: 174 RPRNAPAYAAAAAAGGRSLAEFFVREAEVLHAKAGQYQKPEDVPFFPQDLPSPLFPTKDY 353
Query: 463 TSDLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXX 642
L+ A SV+VNDAIW MYF+ELLP GDDGNYA S +
Sbjct: 354 PKVLHSFASSVSVNDAIWKMYFNELLPLFTVDGDDGNYAETVALDFACLKALSRRIHIGK 533
Query: 643 YVA 651
YVA
Sbjct: 534 YVA 542
Score = 35.0 bits (70), Expect(2) = 1e-028
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3 / +2
Query: 159 ADRPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQ 269
ADR + A+PG G AGGG H ++PHR Q
Sbjct: 62 ADREIIDGRGGAEPGGGARRAGAGGGLHRLRPHRARQ 172
>ref|XM_464326.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1433
Score = 115 bits (246), Expect(2) = 1e-028
Identities = 51/123 (41%), Positives = 68/123 (55%)
Frame = +1 / +2
Query: 283 RPAYDPLHSAAGRRLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNF 462
RP P ++AA S E F+RE+E + +KAG+YQ +++PFF +PS L P ++
Sbjct: 173 RPRNAPAYAAAAAAGGRSLAEFFVREAEVLHAKAGQYQKPEDVPFFPQDLPSPLFPTKDY 352
Query: 463 TSDLYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXX 642
L+ A SV+VNDAIW MYF+ELLP GDDGNYA S +
Sbjct: 353 PKVLHSFASSVSVNDAIWKMYFNELLPLFTVDGDDGNYAETVALDFACLKALSRRIHIGK 532
Query: 643 YVA 651
YVA
Sbjct: 533 YVA 541
Score = 35.0 bits (70), Expect(2) = 1e-028
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3 / +1
Query: 159 ADRPRVPVHRRAQPGHGEGLPDAGGGHHCVQPHREGQ 269
ADR + A+PG G AGGG H ++PHR Q
Sbjct: 61 ADREIIDGRGGAEPGGGARRAGAGGGLHRLRPHRARQ 171
>dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E07, full
insert sequence
Length = 1348
Score = 96.8 bits (205), Expect(2) = 3e-025
Identities = 40/110 (36%), Positives = 59/110 (53%)
Frame = +1 / +3
Query: 322 RLNASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNV 501
R N S VE ++++E + ++ GRY+S E PFF + + P + + L+PAA ++N+
Sbjct: 450 RFNGSLVEFMVKKTEKMHARMGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANINI 629
Query: 502 NDAIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
N IW +YF +LLPRL K G DGN S +Y YVA
Sbjct: 630 NKRIWDVYFGDLLPRLVKEGSDGNCGSSACWDMLILQALSKRIHYGKYVA 779
Score = 42.8 bits (87), Expect(2) = 3e-025
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L++ ++R L + EDTI+F L+ER+++ N YDP
Sbjct: 324 LTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDTYDP 431
>gb|AACV01003484.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003484, whole
genome shotgun sequence
Length = 14108
Score = 64.8 bits (135), Expect(3) = 8e-022
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = +1 / -2
Query: 175 SPSTAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDPLHSAAGRRLNASFV 342
S A LSL VRD L REED+IVF+LIERA+ P N PAY +A GR L FV
Sbjct: 6010 SMGEAELSLAAVRDALVREEDSIVFALIERARRPRNAPAYAAAAAAGGRSLAEFFV 5843
Score = 60.6 bits (126), Expect(3) = 8e-022
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1 / -3
Query: 472 LYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNYA 579
L+ A SV+VNDAIW MYF+ELLP GDDGNYA
Sbjct: 4767 LHSFASSVSVNDAIWKMYFNELLPLFTVDGDDGNYA 4660
Score = 31.8 bits (63), Expect(3) = 8e-022
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1 / -3
Query: 382 AGRYQSLQEIPFFAYRVPSALAPPYNF 462
AG+YQ +++PFF +PS L P ++
Sbjct: 4944 AGQYQKPEDVPFFPQDLPSPLFPTKDY 4864
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,499,430,787
Number of Sequences: 438736
Number of extensions: 47009754
Number of successful extensions: 422641
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 178794812557
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)