TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 130 2e-038
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 121 4e-035
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 121 2e-034
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 121 2e-034
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 121 2e-034
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-034
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 65 8e-034
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 65 9e-034
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 65 9e-034
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 65 1e-033
gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressin... 121 5e-031
gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (ja... 79 1e-029
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-024
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 62 3e-024
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 62 3e-024
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 62 3e-024
gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) c... 58 6e-024
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 130 bits (279), Expect(3) = 2e-038
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GET RE++KRH+HF+ALQLGLKKGMKVLDVGCGIGGPL EIARFSS S+TGL NN Y
Sbjct: 169 RWQGETLRESLKRHEHFLALQLGLKKGMKVLDVGCGIGGPLREIARFSSASVTGLNNNAY 348
Query: 396 HVSRGK 413
+SRGK
Sbjct: 349 QISRGK 366
Score = 111 bits (237), Expect(2) = 1e-027
Identities = 45/74 (60%), Positives = 57/74 (77%)
Frame = -2 / -2
Query: 436 KKKAKMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCW 257
K K+ +LPL+ W +LL +PV + ELNLAIS+KGPP+PHPTSRTF+PFL P+C A KC
Sbjct: 389 KPTEKLSSLPLDIWYALLFSPVTDAELNLAISLKGPPMPHPTSRTFMPFLRPSCKARKCS 210
Query: 256 CRLMASREVSPGYL 215
RL SR+VSP +L
Sbjct: 209 *RLRLSRKVSPCHL 168
Score = 48.7 bits (100), Expect(3) = 2e-038
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHF 56
YDLVT FYEYGWG+SFHF
Sbjct: 109 YDLVTSFYEYGWGESFHF 162
Score = 37.3 bits (75), Expect(2) = 1e-027
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2 / -2
Query: 55 KWNESPHPYS*KPVTRS* 2
KWN+SP PYS*K VTRS*
Sbjct: 161 KWNDSPQPYS*KLVTRS* 108
Score = 24.4 bits (47), Expect(3) = 2e-038
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3 / +1
Query: 504 SAXLSEXCCXLXGDXXNXXXADNTFD 581
S LSE C + D N D TFD
Sbjct: 379 SVGLSETCNFVKADFMNMPIPDATFD 456
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 121 bits (259), Expect(3) = 4e-035
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 239 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 418
Query: 396 HVSRGK 413
++RGK
Sbjct: 419 QITRGK 436
Score = 97.7 bits (207), Expect(2) = 1e-022
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV E +LNLAIS+ GPPIP PTS+TFIP +P+ A KC CRLM
Sbjct: 447 RLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLM 268
Query: 244 ASREVSPGYL 215
SR SP +L
Sbjct: 267 LSRRDSPFHL 238
Score = 48.7 bits (100), Expect(3) = 4e-035
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 179 YDLATSFYEYGWGESFHFA 235
Score = 34.1 bits (68), Expect(2) = 1e-022
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 234 AKWKDSPQPYS*KLVARS* 178
Score = 21.7 bits (41), Expect(3) = 4e-035
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3 / +2
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A +S C + D +DNTFD
Sbjct: 452 AGVSGTCDFVKADFMKMPFSDNTFD 526
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 121 bits (259), Expect(3) = 2e-034
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 326 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 505
Query: 396 HVSRGK 413
++RGK
Sbjct: 506 QITRGK 523
Score = 97.7 bits (207), Expect(2) = 2e-022
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV E +LNLAIS+ GPPIP PTS+TFIP +P+ A KC CRLM
Sbjct: 534 RLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLM 355
Query: 244 ASREVSPGYL 215
SR SP +L
Sbjct: 354 LSRRDSPFHL 325
Score = 48.7 bits (100), Expect(3) = 2e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 266 YDLATSFYEYGWGESFHFA 322
Score = 34.1 bits (68), Expect(2) = 2e-022
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 321 AKWKDSPQPYS*KLVARS* 265
Score = 21.7 bits (41), Expect(3) = 2e-034
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3 / +2
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A +S C + D +DNTFD
Sbjct: 539 AGVSGTCDFVKADFMKMPFSDNTFD 613
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 121 bits (259), Expect(3) = 2e-034
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 326 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 505
Query: 396 HVSRGK 413
++RGK
Sbjct: 506 QITRGK 523
Score = 97.7 bits (207), Expect(2) = 2e-022
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV E +LNLAIS+ GPPIP PTS+TFIP +P+ A KC CRLM
Sbjct: 534 RLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLM 355
Query: 244 ASREVSPGYL 215
SR SP +L
Sbjct: 354 LSRRDSPFHL 325
Score = 48.7 bits (100), Expect(3) = 2e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 266 YDLATSFYEYGWGESFHFA 322
Score = 34.1 bits (68), Expect(2) = 2e-022
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 321 AKWKDSPQPYS*KLVARS* 265
Score = 21.7 bits (41), Expect(3) = 2e-034
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3 / +2
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A +S C + D +DNTFD
Sbjct: 539 AGVSGTCDFVKADFMKMPFSDNTFD 613
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase
mRNA, complete cds
Length = 1629
Score = 121 bits (259), Expect(3) = 2e-034
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 400 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 579
Query: 396 HVSRGK 413
++RGK
Sbjct: 580 QITRGK 597
Score = 97.7 bits (207), Expect(2) = 3e-022
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV E +LNLAIS+ GPPIP PTS+TFIP +P+ A KC CRLM
Sbjct: 608 RLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLM 429
Query: 244 ASREVSPGYL 215
SR SP +L
Sbjct: 428 LSRRDSPFHL 399
Score = 48.7 bits (100), Expect(3) = 2e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 340 YDLATSFYEYGWGESFHFA 396
Score = 34.1 bits (68), Expect(2) = 3e-022
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 395 AKWKDSPQPYS*KLVARS* 339
Score = 21.7 bits (41), Expect(3) = 2e-034
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3 / +1
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A +S C + D +DNTFD
Sbjct: 613 AGVSGTCDFVKADFMKMPFSDNTFD 687
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 121 bits (259), Expect(3) = 7e-034
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 1783 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 1962
Query: 396 HVSRGK 413
++RGK
Sbjct: 1963 QITRGK 1980
Score = 97.7 bits (207), Expect(2) = 4e-022
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV E +LNLAIS+ GPPIP PTS+TFIP +P+ A KC CRLM
Sbjct: 1991 RLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLM 1812
Query: 244 ASREVSPGYL 215
SR SP +L
Sbjct: 1811 LSRRDSPFHL 1782
Score = 48.7 bits (100), Expect(3) = 7e-034
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 1723 YDLATSFYEYGWGESFHFA 1779
Score = 34.1 bits (68), Expect(2) = 4e-022
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 1778 AKWKDSPQPYS*KLVARS* 1722
Score = 21.7 bits (41), Expect(3) = 7e-034
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3 / +1
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A +S C + D +DNTFD
Sbjct: 1996 AGVSGTCDFVKADFMKMPFSDNTFD 2070
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 65.2 bits (136), Expect(4) = 8e-034
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3 / -1
Query: 180 YSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
YS L L FR+ GET RE++KRH+HF+ALQLGLKKGMKV
Sbjct: 7170717 YSDFVFLR*LSFRWQGETLRESLKRHEHFLALQLGLKKGMKV 7170592
Score = 49.6 bits (102), Expect(4) = 8e-034
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 3 YDLVTGFYEYGWGDSFHFAGGS 68
YDLVT FYEYGWG+SFHF S
Sbjct: 7170846 YDLVTSFYEYGWGESFHFGSRS 7170781
Score = 44.1 bits (90), Expect(4) = 8e-034
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / -1
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 7170483 LQVLDVGCGIGGPLREIARF 7170424
Score = 43.7 bits (89), Expect(4) = 8e-034
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3 / -3
Query: 354 FSSTSITGLTNNDYHVSRGKVCILAFFL 437
+SS S+TGL NN Y +SRGKV AF+L
Sbjct: 7170343 YSSASVTGLNNNAYQISRGKVTSSAFYL 7170260
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 65.2 bits (136), Expect(4) = 9e-034
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3 / -2
Query: 180 YSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
YS L L FR+ GET RE++KRH+HF+ALQLGLKKGMKV
Sbjct: 111239 YSDFVFLR*LSFRWQGETLRESLKRHEHFLALQLGLKKGMKV 111114
Score = 49.6 bits (102), Expect(4) = 9e-034
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -2
Query: 3 YDLVTGFYEYGWGDSFHFAGGS 68
YDLVT FYEYGWG+SFHF S
Sbjct: 111368 YDLVTSFYEYGWGESFHFGSRS 111303
Score = 44.1 bits (90), Expect(4) = 9e-034
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / -2
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 111005 LQVLDVGCGIGGPLREIARF 110946
Score = 43.7 bits (89), Expect(4) = 9e-034
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3 / -1
Query: 354 FSSTSITGLTNNDYHVSRGKVCILAFFL 437
+SS S+TGL NN Y +SRGKV AF+L
Sbjct: 110865 YSSASVTGLNNNAYQISRGKVTSSAFYL 110782
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 65.2 bits (136), Expect(4) = 9e-034
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3 / +3
Query: 180 YSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
YS L L FR+ GET RE++KRH+HF+ALQLGLKKGMKV
Sbjct: 43317 YSDFVFLR*LSFRWQGETLRESLKRHEHFLALQLGLKKGMKV 43442
Score = 49.6 bits (102), Expect(4) = 9e-034
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFAGGS 68
YDLVT FYEYGWG+SFHF S
Sbjct: 43188 YDLVTSFYEYGWGESFHFGSRS 43253
Score = 44.1 bits (90), Expect(4) = 9e-034
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / +3
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 43551 LQVLDVGCGIGGPLREIARF 43610
Score = 43.7 bits (89), Expect(4) = 9e-034
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3 / +2
Query: 354 FSSTSITGLTNNDYHVSRGKVCILAFFL 437
+SS S+TGL NN Y +SRGKV AF+L
Sbjct: 43691 YSSASVTGLNNNAYQISRGKVTSSAFYL 43774
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 65.2 bits (136), Expect(4) = 1e-033
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3 / +2
Query: 180 YSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
YS L L FR+ GET RE++KRH+HF+ALQLGLKKGMKV
Sbjct: 6953 YSDFVFLR*LSFRWQGETLRESLKRHEHFLALQLGLKKGMKV 7078
Score = 49.6 bits (102), Expect(4) = 1e-033
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFAGGS 68
YDLVT FYEYGWG+SFHF S
Sbjct: 6824 YDLVTSFYEYGWGESFHFGSRS 6889
Score = 44.1 bits (90), Expect(4) = 1e-033
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 7187 LQVLDVGCGIGGPLREIARF 7246
Score = 43.7 bits (89), Expect(4) = 1e-033
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3 / +1
Query: 354 FSSTSITGLTNNDYHVSRGKVCILAFFL 437
+SS S+TGL NN Y +SRGKV AF+L
Sbjct: 7327 YSSASVTGLNNNAYQISRGKVTSSAFYL 7410
>gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-K15, mRNA sequence
Length = 619
Score = 121 bits (259), Expect(3) = 5e-031
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y
Sbjct: 361 RWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEY 540
Query: 396 HVSRGK 413
++RGK
Sbjct: 541 QITRGK 558
Score = 29.0 bits (57), Expect(3) = 5e-031
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWG 41
YDL T FYEYG G
Sbjct: 300 YDLATSFYEYGLG 338
Score = 27.2 bits (53), Expect(3) = 5e-031
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 33 GWGDSFHFA 59
GWG+SFHFA
Sbjct: 331 GWGESFHFA 357
>gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11423_1A, mRNA sequence
Length = 417
Score = 78.5 bits (165), Expect(3) = 1e-029
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 294 GMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDYHVSRGK 413
GMKVLDVGCGIGGPL EIA+FS S+TGL NN+Y ++RGK
Sbjct: 184 GMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGK 303
Score = 48.7 bits (100), Expect(3) = 1e-029
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 47 YDLATSFYEYGWGESFHFA 103
Score = 44.6 bits (91), Expect(3) = 1e-029
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKK 293
R+ GE+ RE+IKRH+HF+ALQLG+ +
Sbjct: 107 RWNGESLRESIKRHEHFLALQLGVNQ 184
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 62.5 bits (130), Expect(3) = 3e-024
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +3 / -3
Query: 207 LYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
L+FR+ GET RE++KR +HF+ALQLGLKKGMKV
Sbjct: 1964312 LFFRWHGETLRESLKRREHFLALQLGLKKGMKV 1964214
Score = 46.4 bits (95), Expect(3) = 3e-024
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3 / -1
Query: 345 IARFSSTSITGLTNNDYHVSRGKVCILAFFL 437
+ +FSS S+TGL NNDY +SRG+V FF+
Sbjct: 1963975 LPKFSSASVTGLNNNDYQISRGQVMSSCFFV 1963883
Score = 44.1 bits (90), Expect(3) = 3e-024
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / -1
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 1964113 LQVLDVGCGIGGPLREIARF 1964054
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 62.5 bits (130), Expect(3) = 3e-024
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +3 / -1
Query: 207 LYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
L+FR+ GET RE++KR +HF+ALQLGLKKGMKV
Sbjct: 8158 LFFRWHGETLRESLKRREHFLALQLGLKKGMKV 8060
Score = 46.4 bits (95), Expect(3) = 3e-024
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3 / -2
Query: 345 IARFSSTSITGLTNNDYHVSRGKVCILAFFL 437
+ +FSS S+TGL NNDY +SRG+V FF+
Sbjct: 7821 LPKFSSASVTGLNNNDYQISRGQVMSSCFFV 7729
Score = 44.1 bits (90), Expect(3) = 3e-024
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / -2
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 7959 LQVLDVGCGIGGPLREIARF 7900
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 62.5 bits (130), Expect(3) = 3e-024
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +3 / -1
Query: 207 LYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
L+FR+ GET RE++KR +HF+ALQLGLKKGMKV
Sbjct: 8158 LFFRWHGETLRESLKRREHFLALQLGLKKGMKV 8060
Score = 46.4 bits (95), Expect(3) = 3e-024
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3 / -2
Query: 345 IARFSSTSITGLTNNDYHVSRGKVCILAFFL 437
+ +FSS S+TGL NNDY +SRG+V FF+
Sbjct: 7821 LPKFSSASVTGLNNNDYQISRGQVMSSCFFV 7729
Score = 44.1 bits (90), Expect(3) = 3e-024
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / -2
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 7959 LQVLDVGCGIGGPLREIARF 7900
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 62.5 bits (130), Expect(3) = 3e-024
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +3 / +1
Query: 207 LYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
L+FR+ GET RE++KR +HF+ALQLGLKKGMKV
Sbjct: 2107 LFFRWHGETLRESLKRREHFLALQLGLKKGMKV 2205
Score = 46.4 bits (95), Expect(3) = 3e-024
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3 / +2
Query: 345 IARFSSTSITGLTNNDYHVSRGKVCILAFFL 437
+ +FSS S+TGL NNDY +SRG+V FF+
Sbjct: 2444 LPKFSSASVTGLNNNDYQISRGQVMSSCFFV 2536
Score = 44.1 bits (90), Expect(3) = 3e-024
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 297 MKVLDVGCGIGGPLIEIARF 356
++VLDVGCGIGGPL EIARF
Sbjct: 2306 LQVLDVGCGIGGPLREIARF 2365
>gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015390, whole
genome shotgun sequence
Length = 10237
Score = 57.9 bits (120), Expect(4) = 6e-024
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +3 / -1
Query: 213 FRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
FR+ GE+ RE+IKRH+HF+ALQLG+K GMKV
Sbjct: 8122 FRWNGESLRESIKRHEHFLALQLGVKPGMKV 8030
Score = 48.7 bits (100), Expect(4) = 6e-024
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 8298 YDLATSFYEYGWGESFHFA 8242
Score = 41.4 bits (84), Expect(4) = 6e-024
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3 / -3
Query: 303 VLDVGCGIGGPLIEIARF 356
VLDVGCGIGGPL EIA+F
Sbjct: 7937 VLDVGCGIGGPLREIAKF 7884
Score = 34.5 bits (69), Expect(4) = 6e-024
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 357 SSTSITGLTNNDYHVSRGKV 416
S S+TGL NN+Y ++RGKV
Sbjct: 7517 SLASVTGLNNNEYQITRGKV 7458
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,686,127,222
Number of Sequences: 438736
Number of extensions: 55390580
Number of successful extensions: 258795
Number of sequences better than 1.0e-020: 22
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 122583593295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)