TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 206 1e-051
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 138 3e-048
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 138 3e-048
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 123 9e-040
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 123 9e-040
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 122 2e-039
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 69 8e-033
dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA... 95 1e-031
ref|NM_187463.1| Oryza sativa (japonica cultivar-group), p... 95 1e-031
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 68 4e-031
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 68 8e-031
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 69 1e-030
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 68 2e-030
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 69 2e-030
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 68 4e-030
gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda pha... 95 2e-029
gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cD... 80 4e-027
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 69 5e-026
dbj|AK102383.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-025
gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) c... 63 2e-025
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 63 5e-025
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 69 6e-025
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 68 7e-025
gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressin... 95 6e-024
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 63 4e-022
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 63 2e-021
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 206 bits (445), Expect = 1e-051
Identities = 89/139 (64%), Positives = 93/139 (66%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL +YHKTCF HCKG LS +YSSM LYCKTH
Sbjct: 4 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTH 183
Query: 251 FEQLFKETGSFSKNFTPXXKSSDKXXLTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
FEQLFKETGSFSK F+ KSS+K RAPSKLSS FSGT ACQKTVYPLE LTL
Sbjct: 184 FEQLFKETGSFSKKFSQGGKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLTL 363
Query: 431 EXXSYHKXXXXXSHGGXXL 487
E SYHK SHGG L
Sbjct: 364 EGESYHKSCFKCSHGGCIL 420
Score = 172 bits (370), Expect = 2e-041
Identities = 80/139 (57%), Positives = 87/139 (62%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDDXXXXXXXXXXXSEDX 307
R PPCE L LLW*D SRV+ S+GYTVFWQA L *VPE +D SED
Sbjct: 419 RMQPPCEHLKQLLW*DSPSRVSFSNGYTVFWQAAHLS*VPENAEDSLLGALPWSLFSEDL 240
Query: 306 XXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRS 127
F EKLPVSLKSCSK VLQY S+EE*L IER+PLQW KHVLW* S RRS
Sbjct: 239 PPCENFFEKLPVSLKSCSKCVLQYRTPSIEE*LHIERVPLQWLHLKHVLW*ETPSAVRRS 60
Query: 126 MXXXXLSHSAHXSXVPVKE 70
M LSH+ H S VPV +
Sbjct: 59 MKWTVLSHALHLSCVPVND 3
Score = 108 bits (231), Expect = 3e-022
Identities = 57/137 (41%), Positives = 62/137 (45%)
Frame = +3 / +2
Query: 75 SPAXRXXARSATRXXXSSTSSXXXXXPTIRHASXXATAKGSSRXXATLPWXXXCXXXXXX 254
SPA R AR ATR SSTSS PT RHAS ATA+G SR TL W C
Sbjct: 8 SPARRTSARRATRPSISSTSSPPTASPTTRHASSAATARGPSRCVTTLRWMVSCTARRTL 187
Query: 255 XXXXXXXXXXXXXXXXXXSLQTRXN*QGPPASYHLXFLVLXIXXQLARKQCTRWXS*LWK 434
+LQ R + ASY L L I Q A+K CT W S*LW+
Sbjct: 188 SSSSKRRGASQRNSRKVVNLQRRATREELLASYLQHSLELKINVQPAKKLCTHWRS*LWR 367
Query: 435 XSPTTRXXXXXRTGAXS 485
S TTR R GA S
Sbjct: 368 VSLTTRVASSARMGAAS 418
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 138 bits (295), Expect(2) = 3e-048
Identities = 56/84 (66%), Positives = 58/84 (69%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL YHKTCF HCKGILS SYSSM LYCKTH
Sbjct: 68 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 247
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETGSFSK F P +S+DK
Sbjct: 248 FEQLFKETGSFSKKFAPGCRSTDK 319
Score = 111 bits (238), Expect(2) = 3e-035
Identities = 51/81 (62%), Positives = 54/81 (66%)
Frame = -2 / -2
Query: 312 DXXXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXR 133
D G FLEKLPVSLKSCSKWVLQ SM+E*L IERIPLQW K VLW S R
Sbjct: 309 DLQPGANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHIERIPLQWLHLKQVLWYGTPSAVR 130
Query: 132 RSMXXXXLSHSAHXSXVPVKE 70
RSM LSH+ H S VPVK+
Sbjct: 129 RSMKWTVLSHAVHLSCVPVKD 67
Score = 77.6 bits (163), Expect(2) = 3e-048
Identities = 34/53 (64%), Positives = 35/53 (66%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
L RAPSK+ S FSGT ACQKTVYPLE LTLE SYHK SHGG L
Sbjct: 323 LARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCIL 481
Score = 60.2 bits (125), Expect(2) = 3e-035
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXD 355
R PP E L LLW D S+V+ SSGYTVFWQA L *VPE +
Sbjct: 480 RMQPP*EHLKQLLWYDSPSKVSFSSGYTVFWQAAHLS*VPENAE 349
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 138 bits (295), Expect(2) = 3e-048
Identities = 56/84 (66%), Positives = 58/84 (69%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SFTGTQ C CDK IDLL YHKTCF HCKGILS SYSSM LYCKTH
Sbjct: 4 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 183
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETGSFSK F P +S+DK
Sbjct: 184 FEQLFKETGSFSKKFAPGCRSTDK 255
Score = 111 bits (238), Expect(2) = 3e-035
Identities = 51/81 (62%), Positives = 54/81 (66%)
Frame = -2 / -2
Query: 312 DXXXGVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXR 133
D G FLEKLPVSLKSCSKWVLQ SM+E*L IERIPLQW K VLW S R
Sbjct: 245 DLQPGANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHIERIPLQWLHLKQVLWYGTPSAVR 66
Query: 132 RSMXXXXLSHSAHXSXVPVKE 70
RSM LSH+ H S VPVK+
Sbjct: 65 RSMKWTVLSHAVHLSCVPVKD 3
Score = 77.6 bits (163), Expect(2) = 3e-048
Identities = 34/53 (64%), Positives = 35/53 (66%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
L RAPSK+ S FSGT ACQKTVYPLE LTLE SYHK SHGG L
Sbjct: 259 LARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCIL 417
Score = 60.2 bits (125), Expect(2) = 3e-035
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXD 355
R PP E L LLW D S+V+ SSGYTVFWQA L *VPE +
Sbjct: 416 RMQPP*EHLKQLLWYDSPSKVSFSSGYTVFWQAAHLS*VPENAE 285
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 123 bits (263), Expect(2) = 9e-040
Identities = 49/87 (56%), Positives = 56/87 (64%)
Frame = +2 / +1
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYC 241
T +F+GTQ C CDK IDLL YHK+CF HCKG LS SYSSM LYC
Sbjct: 172 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYC 351
Query: 242 KTHFEQLFKETGSFSKNFTPXXKSSDK 322
KTHFEQLFKETG+F KNF K++ +
Sbjct: 352 KTHFEQLFKETGTFKKNFPSGTKANSE 432
Score = 88.1 bits (186), Expect(2) = 2e-023
Identities = 41/72 (56%), Positives = 45/72 (62%)
Frame = -2 / -1
Query: 294 KFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRSMXXX 115
KF K+PVSL SCSKWVLQ SM+E*L IE +PLQW K LW* S RRSM
Sbjct: 404 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 225
Query: 114 XLSHSAHXSXVP 79
LS + H S VP
Sbjct: 224 VLSQALHLSCVP 189
Score = 63.8 bits (133), Expect(2) = 9e-040
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+ PSKLSS F GT AC+KTVYPLE +T+E YH+ +HGG L
Sbjct: 439 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLL 591
Score = 44.1 bits (90), Expect(2) = 2e-023
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2 / -1
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PP L +LW* S V S+GYTVF QA L VP+ +D
Sbjct: 590 RRQPPWAHLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQNTED 456
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 123 bits (263), Expect(2) = 9e-040
Identities = 49/87 (56%), Positives = 56/87 (64%)
Frame = +2 / +1
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYC 241
T +F+GTQ C CDK IDLL YHK+CF HCKG LS SYSSM LYC
Sbjct: 55 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYC 234
Query: 242 KTHFEQLFKETGSFSKNFTPXXKSSDK 322
KTHFEQLFKETG+F KNF K++ +
Sbjct: 235 KTHFEQLFKETGTFKKNFPSGTKANSE 315
Score = 88.1 bits (186), Expect(2) = 2e-023
Identities = 41/72 (56%), Positives = 45/72 (62%)
Frame = -2 / -3
Query: 294 KFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRSMXXX 115
KF K+PVSL SCSKWVLQ SM+E*L IE +PLQW K LW* S RRSM
Sbjct: 287 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 108
Query: 114 XLSHSAHXSXVP 79
LS + H S VP
Sbjct: 107 VLSQALHLSCVP 72
Score = 63.8 bits (133), Expect(2) = 9e-040
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+ PSKLSS F GT AC+KTVYPLE +T+E YH+ +HGG L
Sbjct: 322 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLL 474
Score = 44.1 bits (90), Expect(2) = 2e-023
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2 / -3
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PP L +LW* S V S+GYTVF QA L VP+ +D
Sbjct: 473 RRQPPWAHLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQNTED 339
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 122 bits (260), Expect(2) = 2e-039
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F+GTQ C CDK IDLL YHK+CF HCKG LS SYSSM LYCKTH
Sbjct: 202 TFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTH 381
Query: 251 FEQLFKETGSFSKNFTPXXKSSDK 322
FEQLFKETG+F KNF K++ +
Sbjct: 382 FEQLFKETGTFKKNFPSGTKANSE 453
Score = 88.1 bits (186), Expect(2) = 2e-023
Identities = 41/72 (56%), Positives = 45/72 (62%)
Frame = -2 / -3
Query: 294 KFLEKLPVSLKSCSKWVLQYXXXSMEE*LXIERIPLQWXXXKHVLW*VXXSXXRRSMXXX 115
KF K+PVSL SCSKWVLQ SM+E*L IE +PLQW K LW* S RRSM
Sbjct: 425 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 246
Query: 114 XLSHSAHXSXVP 79
LS + H S VP
Sbjct: 245 VLSQALHLSCVP 210
Score = 63.8 bits (133), Expect(2) = 2e-039
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+ PSKLSS F GT AC+KTVYPLE +T+E YH+ +HGG L
Sbjct: 460 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLL 612
Score = 44.1 bits (90), Expect(2) = 2e-023
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2 / -3
Query: 486 RXXPPCEXLXXLLW*DXXSRVNXSSGYTVFWQAXXLX*VPEXXDD 352
R PP L +LW* S V S+GYTVF QA L VP+ +D
Sbjct: 611 RRQPPWAHLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQNTED 477
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 69.3 bits (145), Expect(4) = 8e-033
Identities = 27/44 (61%), Positives = 27/44 (61%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
SFTGTQ C CDK IDLL YHKTCF HCKGILS
Sbjct: 8196 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILS 8327
Score = 66.1 bits (138), Expect(4) = 8e-033
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNFTP 301
SYSSM LYCKTHFEQLFKETGSFSK F P
Sbjct: 8451 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 8543
Score = 57.4 bits (119), Expect(4) = 6e-024
Identities = 25/44 (56%), Positives = 27/44 (61%)
Frame = -2 / -2
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ERIPLQW K VLW S RRSM LSH+ H S VPVK+
Sbjct: 8326 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKD 8195
Score = 56.5 bits (117), Expect(4) = 6e-024
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -2 / -2
Query: 300 GVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXI 202
G FLEKLPVSLKSCSKWVLQ SM+E*L I
Sbjct: 8542 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 8444
Score = 49.2 bits (101), Expect(4) = 8e-033
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSK+ S FSGT ACQKTVYPLE
Sbjct: 8754 RAPSKICSAFSGTQDKCAACQKTVYPLE 8837
Score = 44.6 bits (91), Expect(4) = 6e-024
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -3 / -3
Query: 443 RTXLPESTXPAGTLFSGKLXXYXEYQKXXMIACWGPLSV 327
+T L GTLFSG+L Y E+QK I+C GPL V
Sbjct: 8862 KTALQRVPFLVGTLFSGRLHTYPEFQKTLNISCLGPLPV 8746
Score = 29.9 bits (59), Expect(4) = 8e-033
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / +3
Query: 422 LTLEXXSYHKXXXXXSHGGXXL 487
LTLE SYHK SHGG L
Sbjct: 9156 LTLEGESYHKSCFKCSHGGCIL 9221
Score = 25.4 bits (49), Expect(4) = 6e-024
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVN 421
R PP E L LLW D S+V+
Sbjct: 9220 RMQPP*EHLKQLLWYDSPSKVS 9155
>dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full
insert sequence
Length = 962
Score = 95.5 bits (202), Expect(2) = 1e-031
Identities = 37/83 (44%), Positives = 49/83 (59%)
Frame = +2 / +3
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H++CF HCK LS +YSS+ YCK HF
Sbjct: 180 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 359
Query: 254 EQLFKETGSFSKNFTPXXKSSDK 322
EQLFKETGS++K+F K + +
Sbjct: 360 EQLFKETGSYNKSFQSPAKPASE 428
Score = 64.8 bits (135), Expect(2) = 1e-031
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
LTR+PSK + FSGT C KT YPLE +T+E +YHK SHGG
Sbjct: 444 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGG 593
>ref|NM_187463.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 591
Score = 95.5 bits (202), Expect(2) = 1e-031
Identities = 37/83 (44%), Positives = 49/83 (59%)
Frame = +2 / +1
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H++CF HCK LS +YSS+ YCK HF
Sbjct: 4 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 183
Query: 254 EQLFKETGSFSKNFTPXXKSSDK 322
EQLFKETGS++K+F K + +
Sbjct: 184 EQLFKETGSYNKSFQSPAKPASE 252
Score = 64.8 bits (135), Expect(2) = 1e-031
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
LTR+PSK + FSGT C KT YPLE +T+E +YHK SHGG
Sbjct: 268 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGG 417
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 68.4 bits (143), Expect(4) = 4e-031
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSY 214
SFTGTQ C CDK IDLL +YHKTCF HCKG LS Y
Sbjct: 76470 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 76613
Score = 62.5 bits (130), Expect(4) = 4e-031
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2 / +1
Query: 197 LSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNFT 298
L +YSSM LYCKTHFEQLFKETGSFSK F+
Sbjct: 76699 LQMCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 76800
Score = 60.6 bits (126), Expect(4) = 6e-023
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ER+PLQW KHVLW* S RRSM LSH+ H S VPV +
Sbjct: 76600 ERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVND 76469
Score = 52.4 bits (108), Expect(4) = 4e-031
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSKLSS FSGT ACQKTVYPLE
Sbjct: 77040 RAPSKLSSAFSGTQDKCAACQKTVYPLE 77123
Score = 51.0 bits (105), Expect(4) = 6e-023
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / -2
Query: 291 FLEKLPVSLKSCSKWVLQYXXXSMEE*LXIER 196
F EKLPVSLKSCSK VLQY S+EE*L I R
Sbjct: 76793 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHICR 76698
Score = 39.6 bits (80), Expect(4) = 6e-023
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2 / -3
Query: 417 SSGYTVFWQAXXLX*VPEXXDD 352
S+GYTVFWQA L *VPE +D
Sbjct: 77122 SNGYTVFWQAAHLS*VPENAED 77057
Score = 35.0 bits (70), Expect(4) = 6e-023
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 486 RXXPPCEXLXXLLW*DXXSRVN 421
R PPCE L LLW*D SRV+
Sbjct: 77597 RMQPPCEHLKQLLW*DSPSRVS 77532
Score = 31.3 bits (62), Expect(4) = 4e-031
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 404 VYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+Y LTLE SYHK SHGG L
Sbjct: 77515 IYFFVQLTLEGESYHKSCFKCSHGGCIL 77598
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 68.4 bits (143), Expect(4) = 8e-031
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSY 214
SFTGTQ C CDK IDLL +YHKTCF HCKG LS Y
Sbjct: 6148 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 6005
Score = 62.5 bits (130), Expect(4) = 8e-031
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2 / -1
Query: 197 LSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNFT 298
L +YSSM LYCKTHFEQLFKETGSFSK F+
Sbjct: 5919 LQMCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 5818
Score = 60.6 bits (126), Expect(4) = 1e-022
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -2 / +3
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ER+PLQW KHVLW* S RRSM LSH+ H S VPV +
Sbjct: 6018 ERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVND 6149
Score = 52.4 bits (108), Expect(4) = 8e-031
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / -3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSKLSS FSGT ACQKTVYPLE
Sbjct: 5578 RAPSKLSSAFSGTQDKCAACQKTVYPLE 5495
Score = 51.0 bits (105), Expect(4) = 1e-022
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / +2
Query: 291 FLEKLPVSLKSCSKWVLQYXXXSMEE*LXIER 196
F EKLPVSLKSCSK VLQY S+EE*L I R
Sbjct: 5825 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHICR 5920
Score = 39.6 bits (80), Expect(4) = 1e-022
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 417 SSGYTVFWQAXXLX*VPEXXDD 352
S+GYTVFWQA L *VPE +D
Sbjct: 5496 SNGYTVFWQAAHLS*VPENAED 5561
Score = 35.0 bits (70), Expect(4) = 1e-022
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2 / +2
Query: 486 RXXPPCEXLXXLLW*DXXSRVN 421
R PPCE L LLW*D SRV+
Sbjct: 5021 RMQPPCEHLKQLLW*DSPSRVS 5086
Score = 31.3 bits (62), Expect(4) = 8e-031
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2 / -1
Query: 404 VYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+Y LTLE SYHK SHGG L
Sbjct: 5103 IYFFVQLTLEGESYHKSCFKCSHGGCIL 5020
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 69.3 bits (145), Expect(4) = 1e-030
Identities = 27/44 (61%), Positives = 27/44 (61%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
SFTGTQ C CDK IDLL YHKTCF HCKGILS
Sbjct: 35509 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILS 35378
Score = 66.1 bits (138), Expect(4) = 1e-030
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -3
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNFTP 301
SYSSM LYCKTHFEQLFKETGSFSK F P
Sbjct: 35254 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 35162
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 25/44 (56%), Positives = 27/44 (61%)
Frame = -2 / +3
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ERIPLQW K VLW S RRSM LSH+ H S VPVK+
Sbjct: 35379 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKD 35510
Score = 56.5 bits (117), Expect(3) = 3e-021
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -2 / +3
Query: 300 GVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXI 202
G FLEKLPVSLKSCSKWVLQ SM+E*L I
Sbjct: 35163 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 35261
Score = 49.2 bits (101), Expect(4) = 1e-030
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / -3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSK+ S FSGT ACQKTVYPLE
Sbjct: 34951 RAPSKICSAFSGTQDKCAACQKTVYPLE 34868
Score = 44.6 bits (91), Expect(3) = 3e-021
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -3 / +1
Query: 443 RTXLPESTXPAGTLFSGKLXXYXEYQKXXMIACWGPLSV 327
+T L GTLFSG+L Y E+QK I+C GPL V
Sbjct: 34843 KTALQRVPFLVGTLFSGRLHTYPEFQKTLNISCLGPLPV 34959
Score = 29.9 bits (59), Expect(4) = 1e-030
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -3
Query: 422 LTLEXXSYHKXXXXXSHGGXXL 487
LTLE SYHK SHGG L
Sbjct: 34549 LTLEGESYHKSCFKCSHGGCIL 34484
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 68.4 bits (143), Expect(4) = 2e-030
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSY 214
SFTGTQ C CDK IDLL +YHKTCF HCKG LS Y
Sbjct: 77844 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 77987
Score = 62.5 bits (130), Expect(4) = 2e-030
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2 / +1
Query: 197 LSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNFT 298
L +YSSM LYCKTHFEQLFKETGSFSK F+
Sbjct: 78073 LQMCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 78174
Score = 60.6 bits (126), Expect(4) = 3e-022
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -2 / -1
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ER+PLQW KHVLW* S RRSM LSH+ H S VPV +
Sbjct: 77974 ERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVND 77843
Score = 52.4 bits (108), Expect(4) = 2e-030
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSKLSS FSGT ACQKTVYPLE
Sbjct: 78414 RAPSKLSSAFSGTQDKCAACQKTVYPLE 78497
Score = 51.0 bits (105), Expect(4) = 3e-022
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / -3
Query: 291 FLEKLPVSLKSCSKWVLQYXXXSMEE*LXIER 196
F EKLPVSLKSCSK VLQY S+EE*L I R
Sbjct: 78167 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHICR 78072
Score = 39.6 bits (80), Expect(4) = 3e-022
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2 / -1
Query: 417 SSGYTVFWQAXXLX*VPEXXDD 352
S+GYTVFWQA L *VPE +D
Sbjct: 78496 SNGYTVFWQAAHLS*VPENAED 78431
Score = 35.0 bits (70), Expect(4) = 3e-022
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 486 RXXPPCEXLXXLLW*DXXSRVN 421
R PPCE L LLW*D SRV+
Sbjct: 78971 RMQPPCEHLKQLLW*DSPSRVS 78906
Score = 31.3 bits (62), Expect(4) = 2e-030
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 404 VYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+Y LTLE SYHK SHGG L
Sbjct: 78889 IYFFVQLTLEGESYHKSCFKCSHGGCIL 78972
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 69.3 bits (145), Expect(4) = 2e-030
Identities = 27/44 (61%), Positives = 27/44 (61%)
Frame = +2 / -1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
SFTGTQ C CDK IDLL YHKTCF HCKGILS
Sbjct: 132837 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILS 132706
Score = 66.1 bits (138), Expect(4) = 2e-030
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNFTP 301
SYSSM LYCKTHFEQLFKETGSFSK F P
Sbjct: 132582 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 132490
Score = 57.4 bits (119), Expect(3) = 4e-021
Identities = 25/44 (56%), Positives = 27/44 (61%)
Frame = -2 / +2
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ERIPLQW K VLW S RRSM LSH+ H S VPVK+
Sbjct: 132707 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKD 132838
Score = 56.5 bits (117), Expect(3) = 4e-021
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -2 / +2
Query: 300 GVKFLEKLPVSLKSCSKWVLQYXXXSMEE*LXI 202
G FLEKLPVSLKSCSKWVLQ SM+E*L I
Sbjct: 132491 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 132589
Score = 49.2 bits (101), Expect(4) = 2e-030
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / -1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSK+ S FSGT ACQKTVYPLE
Sbjct: 132279 RAPSKICSAFSGTQDKCAACQKTVYPLE 132196
Score = 44.6 bits (91), Expect(3) = 4e-021
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -3 / +3
Query: 443 RTXLPESTXPAGTLFSGKLXXYXEYQKXXMIACWGPLSV 327
+T L GTLFSG+L Y E+QK I+C GPL V
Sbjct: 132171 KTALQRVPFLVGTLFSGRLHTYPEFQKTLNISCLGPLPV 132287
Score = 29.9 bits (59), Expect(4) = 2e-030
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -1
Query: 422 LTLEXXSYHKXXXXXSHGGXXL 487
LTLE SYHK SHGG L
Sbjct: 131877 LTLEGESYHKSCFKCSHGGCIL 131812
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 68.4 bits (143), Expect(4) = 4e-030
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / -1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSY 214
SFTGTQ C CDK IDLL +YHKTCF HCKG LS Y
Sbjct: 162218 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 162075
Score = 62.5 bits (130), Expect(4) = 4e-030
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2 / -2
Query: 197 LSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNFT 298
L +YSSM LYCKTHFEQLFKETGSFSK F+
Sbjct: 161989 LQMCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 161888
Score = 60.6 bits (126), Expect(4) = 7e-022
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -2 / +1
Query: 201 ERIPLQWXXXKHVLW*VXXSXXRRSMXXXXLSHSAHXSXVPVKE 70
ER+PLQW KHVLW* S RRSM LSH+ H S VPV +
Sbjct: 162088 ERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVND 162219
Score = 52.4 bits (108), Expect(4) = 4e-030
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / -1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSKLSS FSGT ACQKTVYPLE
Sbjct: 161648 RAPSKLSSAFSGTQDKCAACQKTVYPLE 161565
Score = 51.0 bits (105), Expect(4) = 7e-022
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / +3
Query: 291 FLEKLPVSLKSCSKWVLQYXXXSMEE*LXIER 196
F EKLPVSLKSCSK VLQY S+EE*L I R
Sbjct: 161895 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHICR 161990
Score = 39.6 bits (80), Expect(4) = 7e-022
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 417 SSGYTVFWQAXXLX*VPEXXDD 352
S+GYTVFWQA L *VPE +D
Sbjct: 161566 SNGYTVFWQAAHLS*VPENAED 161631
Score = 35.0 bits (70), Expect(4) = 7e-022
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 486 RXXPPCEXLXXLLW*DXXSRVN 421
R PPCE L LLW*D SRV+
Sbjct: 161091 RMQPPCEHLKQLLW*DSPSRVS 161156
Score = 31.3 bits (62), Expect(4) = 4e-030
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2 / -2
Query: 404 VYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
+Y LTLE SYHK SHGG L
Sbjct: 161173 IYFFVQLTLEGESYHKSCFKCSHGGCIL 161090
>gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E17, mRNA sequence
Length = 482
Score = 95.5 bits (202), Expect(2) = 2e-029
Identities = 37/83 (44%), Positives = 49/83 (59%)
Frame = +2 / +3
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H++CF HCK LS +YSS+ YCK HF
Sbjct: 93 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 272
Query: 254 EQLFKETGSFSKNFTPXXKSSDK 322
EQLFKETGS++K+F K + +
Sbjct: 273 EQLFKETGSYNKSFQSPAKPASE 341
Score = 56.5 bits (117), Expect(2) = 2e-029
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
LTR+PSK + FSGT C KT YPLE +T+E +YHK
Sbjct: 357 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHK 479
>gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 612
Score = 79.9 bits (168), Expect(2) = 4e-027
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +2 / +1
Query: 101 ECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQLFKETGS 280
E K +D L +H++CF HCK LS +YSS+ YCK HFEQLFKETGS
Sbjct: 46 EGTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLFKETGS 225
Query: 281 FSKNFTPXXKSSDK 322
++K+F K + +
Sbjct: 226 YNKSFQSPAKPASE 267
Score = 64.8 bits (135), Expect(2) = 4e-027
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
LTR+PSK + FSGT C KT YPLE +T+E +YHK SHGG
Sbjct: 283 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGG 432
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 69.3 bits (145), Expect(3) = 5e-026
Identities = 27/44 (61%), Positives = 27/44 (61%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
SFTGTQ C CDK IDLL YHKTCF HCKGILS
Sbjct: 372535 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILS 372404
Score = 66.1 bits (138), Expect(3) = 5e-026
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -3
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNFTP 301
SYSSM LYCKTHFEQLFKETGSFSK F P
Sbjct: 372280 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 372188
Score = 49.2 bits (101), Expect(3) = 5e-026
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / -3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSK+ S FSGT ACQKTVYPLE
Sbjct: 371977 RAPSKICSAFSGTQDKCAACQKTVYPLE 371894
>dbj|AK102383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092C12, full
insert sequence
Length = 4323
Score = 83.5 bits (176), Expect(2) = 1e-025
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = +2 / +3
Query: 68 SSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKT 247
+++ GT C C + ++ L YH+ CF HCK L +YSS+ LYCK
Sbjct: 258 AAWGGTTQKCDSCGRTVYTVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKP 437
Query: 248 HFEQLFKETGSFSKNFTPXXKSS 316
H++Q+ K TGS K+F KS+
Sbjct: 438 HYDQILKSTGSLEKSFEGTSKSA 506
Score = 56.1 bits (116), Expect(2) = 1e-025
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +2 / +3
Query: 341 PSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGGXXL 487
P++ SS F GT C KTVYPLE + L SYHK +HGG L
Sbjct: 540 PNRFSSMFVGTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTL 686
>gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021892, whole
genome shotgun sequence
Length = 87744
Score = 62.9 bits (131), Expect(3) = 2e-025
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = +2 / -2
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
T +F+GTQ C CDK IDLL YHK+CF HCKG LS
Sbjct: 51461 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLS 51321
Score = 62.5 bits (130), Expect(3) = 2e-025
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / -3
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
SYSSM LYCKTHFEQLFKETG+F KNF
Sbjct: 51196 SYSSMDGVLYCKTHFEQLFKETGTFKKNF 51110
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2 / -1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYH 448
+ PSKLSS F GT AC+KTVYPLE + + H
Sbjct: 50763 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 50650
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 62.9 bits (131), Expect(3) = 5e-025
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = +2 / -3
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
T +F+GTQ C CDK IDLL YHK+CF HCKG LS
Sbjct: 45033 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLS 44893
Score = 62.5 bits (130), Expect(3) = 5e-025
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / -1
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
SYSSM LYCKTHFEQLFKETG+F KNF
Sbjct: 44768 SYSSMDGVLYCKTHFEQLFKETGTFKKNF 44682
Score = 46.4 bits (95), Expect(3) = 5e-025
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2 / -2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYH 448
+ PSKLSS F GT AC+KTVYPLE + + H
Sbjct: 44335 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 44222
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 69.3 bits (145), Expect(3) = 6e-025
Identities = 27/44 (61%), Positives = 27/44 (61%)
Frame = +2 / -2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
SFTGTQ C CDK IDLL YHKTCF HCKGILS
Sbjct: 4427735 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILS 4427604
Score = 66.1 bits (138), Expect(3) = 6e-025
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -2
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNFTP 301
SYSSM LYCKTHFEQLFKETGSFSK F P
Sbjct: 4427480 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 4427388
Score = 49.2 bits (101), Expect(3) = 6e-025
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / -2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSK+ S FSGT ACQKTVYPLE
Sbjct: 4427177 RAPSKICSAFSGTQDKCAACQKTVYPLE 4427094
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 68.4 bits (143), Expect(3) = 7e-025
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / -2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSY 214
SFTGTQ C CDK IDLL +YHKTCF HCKG LS Y
Sbjct: 924541 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 924398
Score = 62.5 bits (130), Expect(3) = 7e-025
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2 / -3
Query: 197 LSXXSYSSMXXXLYCKTHFEQLFKETGSFSKNFT 298
L +YSSM LYCKTHFEQLFKETGSFSK F+
Sbjct: 924312 LQMCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 924211
Score = 52.4 bits (108), Expect(3) = 7e-025
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / -2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLE 418
RAPSKLSS FSGT ACQKTVYPLE
Sbjct: 923971 RAPSKLSSAFSGTQDKCAACQKTVYPLE 923888
>gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B15, mRNA sequence
Length = 512
Score = 95.5 bits (202), Expect(2) = 6e-024
Identities = 37/83 (44%), Positives = 49/83 (59%)
Frame = +2 / +1
Query: 74 FTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHF 253
F+GTQ C C K +D L +H++CF HCK LS +YSS+ YCK HF
Sbjct: 163 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 342
Query: 254 EQLFKETGSFSKNFTPXXKSSDK 322
EQLFKETGS++K+F K + +
Sbjct: 343 EQLFKETGSYNKSFQSPAKPASE 411
Score = 38.6 bits (78), Expect(2) = 6e-024
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYP 412
LTR+PSK + FSGT C KT YP
Sbjct: 427 LTRSPSKAARMFSGTQEKCATCSKTAYP 510
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 62.9 bits (131), Expect(3) = 4e-022
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = +2 / -3
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
T +F+GTQ C CDK IDLL YHK+CF HCKG LS
Sbjct: 605549 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLS 605409
Score = 62.5 bits (130), Expect(3) = 4e-022
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / -1
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
SYSSM LYCKTHFEQLFKETG+F KNF
Sbjct: 605284 SYSSMDGVLYCKTHFEQLFKETGTFKKNF 605198
Score = 46.4 bits (95), Expect(3) = 4e-022
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2 / -2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYH 448
+ PSKLSS F GT AC+KTVYPLE + + H
Sbjct: 604851 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 604738
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 62.9 bits (131), Expect(3) = 2e-021
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = +2 / -3
Query: 62 TMSSFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILS 202
T +F+GTQ C CDK IDLL YHK+CF HCKG LS
Sbjct: 6719813 TKMTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLS 6719673
Score = 62.5 bits (130), Expect(3) = 2e-021
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / -1
Query: 209 SYSSMXXXLYCKTHFEQLFKETGSFSKNF 295
SYSSM LYCKTHFEQLFKETG+F KNF
Sbjct: 6719548 SYSSMDGVLYCKTHFEQLFKETGTFKKNF 6719462
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2 / -2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYH 448
+ PSKLSS F GT AC+KTVYPLE + + H
Sbjct: 6719115 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 6719002
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,070,775,026
Number of Sequences: 438736
Number of extensions: 17445571
Number of successful extensions: 76622
Number of sequences better than 1.0e-020: 31
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 94480396712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)