TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) c... 123 2e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 123 2e-026
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 123 2e-026
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-026
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-026
gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (j... 112 4e-023
ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Oz... 112 4e-023
>gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000520, whole
genome shotgun sequence
Length = 15554
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -2
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7726 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7547
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7546 RM*PVSHL 7523
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -2
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7351592 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7351413
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7351412 RM*PVSHL 7351389
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -2
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7351432 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7351253
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7351252 RM*PVSHL 7351229
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -1
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 14838 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 14659
Query: 554 XYRNVFHV 577
V H+
Sbjct: 14658 RM*PVSHL 14635
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -3
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7430769 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7430590
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7430589 RM*PVSHL 7430566
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -1
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7430769 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7430590
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7430589 RM*PVSHL 7430566
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 123 bits (264), Expect = 2e-026
Identities = 55/68 (80%), Positives = 56/68 (82%)
Frame = +2 / -1
Query: 374 PV*LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSHRGNMFX 553
PV*LS DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS R N
Sbjct: 7353810 PV*LS*DAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVSCRINFLL 7353631
Query: 554 XYRNVFHV 577
V H+
Sbjct: 7353630 RM*PVSHL 7353607
>gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11808, mRNA sequence
Length = 639
Score = 112 bits (240), Expect = 4e-023
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +2 / +3
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNY S
Sbjct: 411 MARDAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYES 560
>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
Length = 1671
Score = 112 bits (240), Expect = 4e-023
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +2 / +1
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
+++DA MDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNY S
Sbjct: 721 MARDAGMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYES 870
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,022,031,256
Number of Sequences: 438736
Number of extensions: 55850375
Number of successful extensions: 189887
Number of sequences better than 1.0e-020: 14
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 166996170104
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)