TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF14f01.yg.2.1
(319 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072229.1| Oryza sativa (japonica cultivar-group) cDNA... 154 3e-036
ref|XM_467764.1| Oryza sativa (japonica cultivar-group), mRNA 154 3e-036
ref|XM_506970.1| PREDICTED Oryza sativa (japonica cultivar-... 154 3e-036
dbj|AK108072.1| Oryza sativa (japonica cultivar-group) cDNA... 154 4e-036
gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) c... 92 2e-035
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 92 9e-035
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 92 1e-034
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 92 3e-033
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 92 5e-033
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 85 3e-031
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 85 3e-031
gb|AACV01005404.1| Oryza sativa (japonica cultivar-group) c... 85 3e-031
dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA... 72 9e-023
ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-... 72 9e-023
dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA... 72 9e-023
ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA 72 9e-023
gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (j... 72 9e-023
>dbj|AK072229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169N10, full
insert sequence
Length = 1756
Score = 154 bits (331), Expect = 3e-036
Identities = 59/99 (59%), Positives = 70/99 (70%)
Frame = -3 / +3
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELWDPXSIL 138
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEMNE+ LWDP S+L
Sbjct: 1137 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEMNENGTLWDPASVL 1316
Query: 137 TAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 1317 PAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 1433
>ref|XM_467764.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1642
Score = 154 bits (331), Expect = 3e-036
Identities = 59/99 (59%), Positives = 70/99 (70%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELWDPXSIL 138
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEMNE+ LWDP S+L
Sbjct: 1115 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEMNENGTLWDPASVL 1294
Query: 137 TAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 1295 PAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 1411
>ref|XM_506970.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_G04.19 mRNA
Length = 1758
Score = 154 bits (331), Expect = 3e-036
Identities = 59/99 (59%), Positives = 70/99 (70%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELWDPXSIL 138
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEMNE+ LWDP S+L
Sbjct: 1139 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEMNENGTLWDPASVL 1318
Query: 137 TAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 1319 PAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 1435
>dbj|AK108072.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C08, full
insert sequence
Length = 1642
Score = 154 bits (330), Expect = 4e-036
Identities = 59/93 (63%), Positives = 68/93 (73%)
Frame = -3 / +2
Query: 299 PIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELWDPXSILTAGXXX 120
P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEMNE+ LWDP S+L AG
Sbjct: 1133 PAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEMNENGTLWDPASVLPAGLMT 1312
Query: 119 XXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 1313 FYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 1411
>gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013347, whole
genome shotgun sequence
Length = 24369
Score = 92.3 bits (195), Expect(2) = 2e-035
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -3 / +3
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NED LWDP S+L AG GNTK DKSWHVMGLGYNPSISPE I AAV
Sbjct: 3558 NEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAGAAV 3713
Score = 84.9 bits (179), Expect(2) = 2e-035
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
YL IV++RF+P ACAWAYGVNV+ L RDGCTELFHQYMEM
Sbjct: 2357 YLNFTQAIVQERFDPGACAWAYGVNVYDLEAWRRDGCTELFHQYMEM 2497
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 92.3 bits (195), Expect(2) = 9e-035
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -3 / -3
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NED LWDP S+L AG GNTK DKSWHVMGLGYNPSISPE I AAV
Sbjct: 133321 NEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAGAAV 133166
Score = 84.9 bits (179), Expect(2) = 9e-035
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / -2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
YL IV++RF+P ACAWAYGVNV+ L RDGCTELFHQYMEM
Sbjct: 134522 YLNFTQAIVQERFDPGACAWAYGVNVYDLEAWRRDGCTELFHQYMEM 134382
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 92.3 bits (195), Expect(2) = 1e-034
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -3 / -2
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NED LWDP S+L AG GNTK DKSWHVMGLGYNPSISPE I AAV
Sbjct: 51071 NEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAGAAV 50916
Score = 84.9 bits (179), Expect(2) = 1e-034
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / -1
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
YL IV++RF+P ACAWAYGVNV+ L RDGCTELFHQYMEM
Sbjct: 52272 YLNFTQAIVQERFDPGACAWAYGVNVYDLEAWRRDGCTELFHQYMEM 52132
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 92.3 bits (195), Expect(2) = 3e-033
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -3 / -1
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NED LWDP S+L AG GNTK DKSWHVMGLGYNPSISPE I AAV
Sbjct: 2308525 NEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAGAAV 2308370
Score = 84.9 bits (179), Expect(2) = 3e-033
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / -3
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
YL IV++RF+P ACAWAYGVNV+ L RDGCTELFHQYMEM
Sbjct: 2309726 YLNFTQAIVQERFDPGACAWAYGVNVYDLEAWRRDGCTELFHQYMEM 2309586
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 92.3 bits (195), Expect(2) = 5e-033
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = -3 / -1
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NED LWDP S+L AG GNTK DKSWHVMGLGYNPSISPE I AAV
Sbjct: 6546897 NEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAGAAV 6546742
Score = 84.9 bits (179), Expect(2) = 5e-033
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / -3
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
YL IV++RF+P ACAWAYGVNV+ L RDGCTELFHQYMEM
Sbjct: 6548098 YLNFTQAIVQERFDPGACAWAYGVNVYDLEAWRRDGCTELFHQYMEM 6547958
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 84.9 bits (179), Expect(2) = 3e-031
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = -3 / +1
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NE+ LWDP S+L AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 6469588 NENGTLWDPASVLPAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 6469743
Score = 72.5 bits (152), Expect(2) = 3e-031
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -3 / +3
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEM
Sbjct: 6469350 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEM 6469490
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 84.9 bits (179), Expect(2) = 3e-031
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = -3 / +3
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NE+ LWDP S+L AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 74457 NENGTLWDPASVLPAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 74612
Score = 72.5 bits (152), Expect(2) = 3e-031
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEM
Sbjct: 74219 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEM 74359
>gb|AACV01005404.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005404, whole
genome shotgun sequence
Length = 35676
Score = 84.9 bits (179), Expect(2) = 3e-031
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = -3 / -2
Query: 176 NEDXELWDPXSILTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
NE+ LWDP S+L AG GNT+ DKSWHVMGLGYNP I PE I+ AAV
Sbjct: 10202 NENGTLWDPASVLPAGLMTFYGNTRPLDKSWHVMGLGYNPHIRPEDIKGAAV 10047
Score = 72.5 bits (152), Expect(2) = 3e-031
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -3 / -1
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEM 177
++ P V++RFNP ACAW+YG+NVF L RD CT+ FHQ MEM
Sbjct: 10440 HINFSDPAVQERFNPRACAWSYGLNVFDLQAWRRDQCTQRFHQLMEM 10300
>dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023H24, full
insert sequence
Length = 2047
Score = 71.6 bits (150), Expect(2) = 9e-023
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
Y+ P+++++FNPNAC WAYG+N F L R+ TE +H + NE+ LW
Sbjct: 1274 YMNFSHPLIKEKFNPNACGWAYGMNFFDLDSWRREKSTEQYHYWQSQNENRTLW 1435
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / +2
Query: 140 LTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
L G TK +KSWHV+GLGYNPSIS E IR+AAV
Sbjct: 1448 LPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAV 1567
>ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0021C10.5
mRNA
Length = 2047
Score = 71.6 bits (150), Expect(2) = 9e-023
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -3 / +2
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
Y+ P+++++FNPNAC WAYG+N F L R+ TE +H + NE+ LW
Sbjct: 1274 YMNFSHPLIKEKFNPNACGWAYGMNFFDLDSWRREKSTEQYHYWQSQNENRTLW 1435
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / +2
Query: 140 LTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
L G TK +KSWHV+GLGYNPSIS E IR+AAV
Sbjct: 1448 LPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAV 1567
>dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K22, full
insert sequence
Length = 2023
Score = 71.6 bits (150), Expect(2) = 9e-023
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -3 / +1
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
Y+ P+++++FNPNAC WAYG+N F L R+ TE +H + NE+ LW
Sbjct: 1252 YMNFSHPLIKEKFNPNACGWAYGMNFFDLDSWRREKSTEQYHYWQSQNENRTLW 1413
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / +1
Query: 140 LTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
L G TK +KSWHV+GLGYNPSIS E IR+AAV
Sbjct: 1426 LPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAV 1545
>ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2022
Score = 71.6 bits (150), Expect(2) = 9e-023
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -3 / +3
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
Y+ P+++++FNPNAC WAYG+N F L R+ TE +H + NE+ LW
Sbjct: 1251 YMNFSHPLIKEKFNPNACGWAYGMNFFDLDSWRREKSTEQYHYWQSQNENRTLW 1412
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / +3
Query: 140 LTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
L G TK +KSWHV+GLGYNPSIS E IR+AAV
Sbjct: 1425 LPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAV 1544
>gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03I06 3', mRNA sequence
Length = 853
Score = 71.6 bits (150), Expect(2) = 9e-023
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = -3 / -1
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
Y+ P+++++FNPNAC WAYG+N F L R+ TE +H + NE+ LW
Sbjct: 790 YMNFSHPLIKEKFNPNACGWAYGMNFFDLDSWRREKSTEQYHYWQSQNENRTLW 629
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / -1
Query: 140 LTAGXXXXXGNTKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
L G TK +KSWHV+GLGYNPSIS E IR+AAV
Sbjct: 616 LPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAV 497
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,887,602,150
Number of Sequences: 438736
Number of extensions: 20315590
Number of successful extensions: 122475
Number of sequences better than 1.0e-020: 18
length of database: 933,473,305
effective HSP length: 56
effective length of database: 908,904,089
effective search space used: 44536300361
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)