TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE8g03.yg.2.1
(360 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 156 2e-045
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 156 2e-045
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 156 2e-045
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 156 2e-045
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 156 2e-045
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 149 4e-043
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 149 4e-043
gb|AU094286.1|AU094286 AU094286 Rice panicle at flowering s... 149 2e-037
gb|C73370.1|C73370 C73370 Rice panicle at flowering stage O... 147 3e-037
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 156 7e-037
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 156 7e-037
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 156 7e-037
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 156 7e-037
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 14623361 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 14623182
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 14623181 SYQREDVVPSESPLIA 14623134
Score = 96.4 bits (204), Expect(2) = 4e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = -2 / -1
Query: 218 IQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRAAEEPRKLQE 39
IQVSF LGP+CG+HVSD G RHRS GDA+ VTQD D P HRE G A EE R+L E
Sbjct: 14623350 IQVSFRTLGPVCGKHVSDRRGARRHRSRGDAVRVTQDGDHPRRHREGLGAAGEELRELPE 14623171
Query: 38 GRRRAV*DPLGC 3
GR + +PL C
Sbjct: 14623170 GRCCPIREPLDC 14623135
Score = 90.0 bits (190), Expect(2) = 3e-024
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +1 / +2
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 14623136 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 14623315
Query: 184 HIGPSAQKDT*IF 222
GPS +KDT*I+
Sbjct: 14623316 QTGPSVRKDT*IY 14623354
Score = 86.8 bits (183), Expect(2) = 5e-023
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2 / +3
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 14623137 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 14623316
Query: 185 I*APAHKKIPEF 220
APA++KIPEF
Sbjct: 14623317 RQAPAYEKIPEF 14623352
Score = 48.3 bits (99), Expect(2) = 2e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / -1
Query: 358 CRNSTRLQVVPLLASRSQALR* 293
CRN+TRLQVVPLLASRSQALR*
Sbjct: 14623500 CRNATRLQVVPLLASRSQALR* 14623435
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / +2
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
+LSACDLDA RGTT*SLV FLQ
Sbjct: 14623436 HLSACDLDARRGTT*SLVAFLQ 14623501
Score = 43.2 bits (88), Expect(2) = 5e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / +1
Query: 296 PECL*P*C*QRDNLKPCRVPA 358
PECL*P C*+R+NLKPC +PA
Sbjct: 14623438 PECL*PRC*KRNNLKPCCIPA 14623500
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1 / -2
Query: 360 TAGTRQGFRLSLC*HQGHRHSGK 292
TAG +QGF+L L *H+GH+HSG+
Sbjct: 14623502 TAGMQQGFKLFLF*HRGHKHSGE 14623434
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / +3
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 117183 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 117362
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 117363 SYQREDVVPSESPLIA 117410
Score = 96.4 bits (204), Expect(2) = 4e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = -2 / +2
Query: 218 IQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRAAEEPRKLQE 39
IQVSF LGP+CG+HVSD G RHRS GDA+ VTQD D P HRE G A EE R+L E
Sbjct: 117194 IQVSFRTLGPVCGKHVSDRRGARRHRSRGDAVRVTQDGDHPRRHREGLGAAGEELRELPE 117373
Query: 38 GRRRAV*DPLGC 3
GR + +PL C
Sbjct: 117374 GRCCPIREPLDC 117409
Score = 90.0 bits (190), Expect(2) = 3e-024
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +1 / -1
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 117408 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 117229
Query: 184 HIGPSAQKDT*IF 222
GPS +KDT*I+
Sbjct: 117228 QTGPSVRKDT*IY 117190
Score = 86.8 bits (183), Expect(2) = 6e-023
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2 / -2
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 117407 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 117228
Query: 185 I*APAHKKIPEF 220
APA++KIPEF
Sbjct: 117227 RQAPAYEKIPEF 117192
Score = 48.3 bits (99), Expect(2) = 2e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR* 293
CRN+TRLQVVPLLASRSQALR*
Sbjct: 117044 CRNATRLQVVPLLASRSQALR* 117109
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
+LSACDLDA RGTT*SLV FLQ
Sbjct: 117108 HLSACDLDARRGTT*SLVAFLQ 117043
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / -3
Query: 296 PECL*P*C*QRDNLKPCRVPA 358
PECL*P C*+R+NLKPC +PA
Sbjct: 117106 PECL*PRC*KRNNLKPCCIPA 117044
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 360 TAGTRQGFRLSLC*HQGHRHSGK 292
TAG +QGF+L L *H+GH+HSG+
Sbjct: 117042 TAGMQQGFKLFLF*HRGHKHSGE 117110
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 38392 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 38213
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 38212 SYQREDVVPSESPLIA 38165
Score = 96.4 bits (204), Expect(2) = 4e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = -2 / -1
Query: 218 IQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRAAEEPRKLQE 39
IQVSF LGP+CG+HVSD G RHRS GDA+ VTQD D P HRE G A EE R+L E
Sbjct: 38381 IQVSFRTLGPVCGKHVSDRRGARRHRSRGDAVRVTQDGDHPRRHREGLGAAGEELRELPE 38202
Query: 38 GRRRAV*DPLGC 3
GR + +PL C
Sbjct: 38201 GRCCPIREPLDC 38166
Score = 90.0 bits (190), Expect(2) = 3e-024
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +1 / +1
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 38167 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 38346
Query: 184 HIGPSAQKDT*IF 222
GPS +KDT*I+
Sbjct: 38347 QTGPSVRKDT*IY 38385
Score = 86.8 bits (183), Expect(2) = 6e-023
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2 / +2
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 38168 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 38347
Query: 185 I*APAHKKIPEF 220
APA++KIPEF
Sbjct: 38348 RQAPAYEKIPEF 38383
Score = 48.3 bits (99), Expect(2) = 2e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / -1
Query: 358 CRNSTRLQVVPLLASRSQALR* 293
CRN+TRLQVVPLLASRSQALR*
Sbjct: 38531 CRNATRLQVVPLLASRSQALR* 38466
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / +1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
+LSACDLDA RGTT*SLV FLQ
Sbjct: 38467 HLSACDLDARRGTT*SLVAFLQ 38532
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 296 PECL*P*C*QRDNLKPCRVPA 358
PECL*P C*+R+NLKPC +PA
Sbjct: 38469 PECL*PRC*KRNNLKPCCIPA 38531
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1 / -2
Query: 360 TAGTRQGFRLSLC*HQGHRHSGK 292
TAG +QGF+L L *H+GH+HSG+
Sbjct: 38533 TAGMQQGFKLFLF*HRGHKHSGE 38465
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / +3
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 12435 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 12614
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 12615 SYQREDVVPSESPLIA 12662
Score = 96.4 bits (204), Expect(2) = 4e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = -2 / +2
Query: 218 IQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRAAEEPRKLQE 39
IQVSF LGP+CG+HVSD G RHRS GDA+ VTQD D P HRE G A EE R+L E
Sbjct: 12446 IQVSFRTLGPVCGKHVSDRRGARRHRSRGDAVRVTQDGDHPRRHREGLGAAGEELRELPE 12625
Query: 38 GRRRAV*DPLGC 3
GR + +PL C
Sbjct: 12626 GRCCPIREPLDC 12661
Score = 90.0 bits (190), Expect(2) = 3e-024
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +1 / -2
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 12660 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 12481
Query: 184 HIGPSAQKDT*IF 222
GPS +KDT*I+
Sbjct: 12480 QTGPSVRKDT*IY 12442
Score = 86.8 bits (183), Expect(2) = 6e-023
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2 / -3
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 12659 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 12480
Query: 185 I*APAHKKIPEF 220
APA++KIPEF
Sbjct: 12479 RQAPAYEKIPEF 12444
Score = 48.3 bits (99), Expect(2) = 2e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR* 293
CRN+TRLQVVPLLASRSQALR*
Sbjct: 12296 CRNATRLQVVPLLASRSQALR* 12361
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -2
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
+LSACDLDA RGTT*SLV FLQ
Sbjct: 12360 HLSACDLDARRGTT*SLVAFLQ 12295
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / -1
Query: 296 PECL*P*C*QRDNLKPCRVPA 358
PECL*P C*+R+NLKPC +PA
Sbjct: 12358 PECL*PRC*KRNNLKPCCIPA 12296
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 360 TAGTRQGFRLSLC*HQGHRHSGK 292
TAG +QGF+L L *H+GH+HSG+
Sbjct: 12294 TAGMQQGFKLFLF*HRGHKHSGE 12362
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / +1
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 8029 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 8208
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 8209 SYQREDVVPSESPLIA 8256
Score = 96.4 bits (204), Expect(2) = 4e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = -2 / +3
Query: 218 IQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRAAEEPRKLQE 39
IQVSF LGP+CG+HVSD G RHRS GDA+ VTQD D P HRE G A EE R+L E
Sbjct: 8040 IQVSFRTLGPVCGKHVSDRRGARRHRSRGDAVRVTQDGDHPRRHREGLGAAGEELRELPE 8219
Query: 38 GRRRAV*DPLGC 3
GR + +PL C
Sbjct: 8220 GRCCPIREPLDC 8255
Score = 90.0 bits (190), Expect(2) = 4e-024
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +1 / -1
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 8254 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 8075
Query: 184 HIGPSAQKDT*IF 222
GPS +KDT*I+
Sbjct: 8074 QTGPSVRKDT*IY 8036
Score = 86.8 bits (183), Expect(2) = 6e-023
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2 / -2
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 8253 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 8074
Query: 185 I*APAHKKIPEF 220
APA++KIPEF
Sbjct: 8073 RQAPAYEKIPEF 8038
Score = 48.3 bits (99), Expect(2) = 2e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / +3
Query: 358 CRNSTRLQVVPLLASRSQALR* 293
CRN+TRLQVVPLLASRSQALR*
Sbjct: 7890 CRNATRLQVVPLLASRSQALR* 7955
Score = 44.1 bits (90), Expect(2) = 4e-024
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
+LSACDLDA RGTT*SLV FLQ
Sbjct: 7954 HLSACDLDARRGTT*SLVAFLQ 7889
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / -3
Query: 296 PECL*P*C*QRDNLKPCRVPA 358
PECL*P C*+R+NLKPC +PA
Sbjct: 7952 PECL*PRC*KRNNLKPCCIPA 7890
Score = 40.9 bits (83), Expect(2) = 4e-025
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1 / +1
Query: 360 TAGTRQGFRLSLC*HQGHRHSGK 292
TAG +QGF+L L *H+GH+HSG+
Sbjct: 7888 TAGMQQGFKLFLF*HRGHKHSGE 7956
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 149 bits (321), Expect(2) = 4e-043
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS GSY+++
Sbjct: 3197 RYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQRE 3376
Query: 34 DVVPSETPLAA 2
DVVPSE+PL A
Sbjct: 3377 DVVPSESPLIA 3409
Score = 88.1 bits (186), Expect(2) = 3e-024
Identities = 40/72 (55%), Positives = 47/72 (65%)
Frame = +1 / -2
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 3407 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 3228
Query: 184 HIGPSAQKDT*I 219
GPS +KDT*+
Sbjct: 3227 QTGPSVRKDT*V 3192
Score = 84.0 bits (177), Expect(2) = 1e-022
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = +2 / -3
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 3406 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 3227
Query: 185 I*APAHKKIPE 217
APA++KIPE
Sbjct: 3226 RQAPAYEKIPE 3194
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 40/71 (56%), Positives = 44/71 (61%)
Frame = -1 / +3
Query: 222 KNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC*GAQEAT 43
K+SGIF AGA +W TCI*S G+ ATPI RRC GYTR * S SPR+ R *GAQ T
Sbjct: 3189 KHSGIFSYAGACLWETCI*SSGSTATPITRRCCQGYTRR*SSAASPRRARSSW*GAQGVT 3368
Query: 42 RRTTSCRLRPP 10
R R P
Sbjct: 3369 RGKMLSHPRAP 3401
Score = 47.8 bits (98), Expect(2) = 4e-043
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRN+TRLQVVPLLASRSQALR
Sbjct: 3137 CRNATRLQVVPLLASRSQALR 3199
Score = 46.4 bits (95), Expect(2) = 3e-024
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDA RGTT*SLV FLQ
Sbjct: 3201 YLSACDLDARRGTT*SLVAFLQ 3136
Score = 45.1 bits (92), Expect(2) = 1e-022
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2 / -3
Query: 284 YVFLPECL*P*C*QRDNLKPCRVPA 358
Y +PECL*P C*+R+NLKPC +PA
Sbjct: 3211 YEKIPECL*PRC*KRNNLKPCCIPA 3137
Score = 41.4 bits (84), Expect(2) = 2e-021
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -1 / +3
Query: 360 TAGTRQGFRLSLC*HQGHRHSGKNTY 283
TAG +QGF+L L *H+GH+HSG +Y
Sbjct: 3135 TAGMQQGFKLFLF*HRGHKHSGIFSY 3212
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 149 bits (321), Expect(2) = 4e-043
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS GSY+++
Sbjct: 3013 RYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQRE 3192
Query: 34 DVVPSETPLAA 2
DVVPSE+PL A
Sbjct: 3193 DVVPSESPLIA 3225
Score = 88.1 bits (186), Expect(2) = 3e-024
Identities = 40/72 (55%), Positives = 47/72 (65%)
Frame = +1 / -3
Query: 4 QPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSP 183
Q RGS+ + PS + L SS A P+ SR* G S SCVT ASP DRCR P+ SDTC P
Sbjct: 3223 QSRGSRMGQHLPSGNSLSSSPAAPSPSR*RRG*SPSCVTLTASPRDRCRRAPRRSDTCFP 3044
Query: 184 HIGPSAQKDT*I 219
GPS +KDT*+
Sbjct: 3043 QTGPSVRKDT*V 3008
Score = 84.0 bits (177), Expect(2) = 1e-022
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = +2 / -1
Query: 5 SQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPH 184
+QG L ++ LV AP Q R LGD D+H LV*P HLL+IGVA+ P DQIHV H
Sbjct: 3222 NQGALGWDNIFPLVTP*APHQLLRALLGDAADDHRLV*P*QHLLVIGVAVLPDDQIHVSH 3043
Query: 185 I*APAHKKIPE 217
APA++KIPE
Sbjct: 3042 RQAPAYEKIPE 3010
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 40/71 (56%), Positives = 44/71 (61%)
Frame = -1 / +2
Query: 222 KNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC*GAQEAT 43
K+SGIF AGA +W TCI*S G+ ATPI RRC GYTR * S SPR+ R *GAQ T
Sbjct: 3005 KHSGIFSYAGACLWETCI*SSGSTATPITRRCCQGYTRR*SSAASPRRARSSW*GAQGVT 3184
Query: 42 RRTTSCRLRPP 10
R R P
Sbjct: 3185 RGKMLSHPRAP 3217
Score = 47.8 bits (98), Expect(2) = 4e-043
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / +1
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRN+TRLQVVPLLASRSQALR
Sbjct: 2953 CRNATRLQVVPLLASRSQALR 3015
Score = 46.4 bits (95), Expect(2) = 3e-024
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +3 / -2
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDA RGTT*SLV FLQ
Sbjct: 3017 YLSACDLDARRGTT*SLVAFLQ 2952
Score = 45.1 bits (92), Expect(2) = 1e-022
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2 / -1
Query: 284 YVFLPECL*P*C*QRDNLKPCRVPA 358
Y +PECL*P C*+R+NLKPC +PA
Sbjct: 3027 YEKIPECL*PRC*KRNNLKPCCIPA 2953
Score = 41.4 bits (84), Expect(2) = 2e-021
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -1 / +2
Query: 360 TAGTRQGFRLSLC*HQGHRHSGKNTY 283
TAG +QGF+L L *H+GH+HSG +Y
Sbjct: 2951 TAGMQQGFKLFLF*HRGHKHSGIFSY 3028
>gb|AU094286.1|AU094286 AU094286 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3926, mRNA sequence
Length = 614
Score = 149 bits (321), Expect(2) = 2e-037
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS GSY+++
Sbjct: 36 RYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQRE 215
Query: 34 DVVPSETPLAA 2
DVVPSE+PL A
Sbjct: 216 DVVPSESPLIA 248
Score = 27.6 bits (54), Expect(2) = 2e-037
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 331 VPLLASRSQALR 296
VPLLASRSQALR
Sbjct: 3 VPLLASRSQALR 38
>gb|C73370.1|C73370 C73370 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3926_1A, mRNA sequence
Length = 459
Score = 147 bits (315), Expect(2) = 3e-037
Identities = 59/71 (83%), Positives = 65/71 (91%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL VRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS GSY+++
Sbjct: 37 RYLXVRWGLXVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQRE 216
Query: 34 DVVPSETPLAA 2
DVVPSE+PL A
Sbjct: 217 DVVPSESPLIA 249
Score = 29.5 bits (58), Expect(2) = 3e-037
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / +1
Query: 334 VVPLLASRSQALR 296
VVPLLASRSQALR
Sbjct: 1 VVPLLASRSQALR 39
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 156 bits (336), Expect = 7e-037
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 40175978 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 40175799
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 40175798 SYQREDVVPSESPLIA 40175751
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 156 bits (336), Expect = 7e-037
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 14383599 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 14383420
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 14383419 SYQREDVVPSESPLIA 14383372
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 156 bits (336), Expect = 7e-037
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 39585320 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 39585141
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 39585140 SYQREDVVPSESPLIA 39585093
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 156 bits (336), Expect = 7e-037
Identities = 62/76 (81%), Positives = 70/76 (92%)
Frame = -3 / -2
Query: 229 LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPG 50
+ +KFRYLFVRWGL VGNMYLI GEHGDTDHEEMLSGLHKTVI+RGVTEKGSE L+RS G
Sbjct: 40095308 ISRKFRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSG 40095129
Query: 49 SYKKDDVVPSETPLAA 2
SY+++DVVPSE+PL A
Sbjct: 40095128 SYQREDVVPSESPLIA 40095081
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,666,869,229
Number of Sequences: 438736
Number of extensions: 42399172
Number of successful extensions: 297309
Number of sequences better than 1.0e-020: 20
length of database: 933,473,305
effective HSP length: 56
effective length of database: 908,904,089
effective search space used: 57260957607
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)