TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA... 82 9e-023
ref|XM_473307.1| Oryza sativa (japonica cultivar-group), p... 82 9e-023
gb|CB666353.1|CB666353 OSJNEd13D14.r OSJNEd Oryza sativa (j... 82 9e-023
gb|AACV01010185.1| Oryza sativa (japonica cultivar-group) c... 82 8e-021
>dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D04, full
insert sequence
Length = 1216
Score = 81.7 bits (172), Expect(2) = 9e-023
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1 / +2
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 704 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 823
Score = 76.2 bits (160), Expect(2) = 4e-021
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +3 / -1
Query: 387 ITVTIKATDHLRYLRICPDEIIYCSHSFXIPXXXISFTXXIK*EEELNXII 539
I VTIKA DHL YLRI PDEI++C HSF IP ISF+ IK*+EE N II
Sbjct: 817 IPVTIKAMDHL*YLRIRPDEIMHCGHSFKIPRRDISFSNFIK*KEECNHII 665
Score = 48.7 bits (100), Expect(2) = 9e-023
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = -1 / +1
Query: 386 DKPRGFPQHCISMQHVAGA*EVRM 315
D P GFP HCI MQHVAGA*EVRM
Sbjct: 823 D*P*GFPHHCIPMQHVAGA*EVRM 894
Score = 48.7 bits (100), Expect(2) = 4e-021
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1 / -3
Query: 313 VILTSHAPATCCIEIQCCGNPRG 381
+ILTS APATCCI IQ CGNP+G
Sbjct: 896 LILTSQAPATCCIGIQWCGNPQG 828
>ref|XM_473307.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 867
Score = 81.7 bits (172), Expect(2) = 9e-023
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1 / +1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 676 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 795
Score = 76.2 bits (160), Expect(2) = 5e-021
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +3 / -1
Query: 387 ITVTIKATDHLRYLRICPDEIIYCSHSFXIPXXXISFTXXIK*EEELNXII 539
I VTIKA DHL YLRI PDEI++C HSF IP ISF+ IK*+EE N II
Sbjct: 789 IPVTIKAMDHL*YLRIRPDEIMHCGHSFKIPRRDISFSNFIK*KEECNHII 637
Score = 48.7 bits (100), Expect(2) = 9e-023
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = -1 / +3
Query: 386 DKPRGFPQHCISMQHVAGA*EVRM 315
D P GFP HCI MQHVAGA*EVRM
Sbjct: 795 D*P*GFPHHCIPMQHVAGA*EVRM 866
Score = 48.3 bits (99), Expect(2) = 5e-021
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1 / -3
Query: 316 ILTSHAPATCCIEIQCCGNPRG 381
ILTS APATCCI IQ CGNP+G
Sbjct: 865 ILTSQAPATCCIGIQWCGNPQG 800
>gb|CB666353.1|CB666353 OSJNEd13D14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13D14 3', mRNA sequence
Length = 798
Score = 81.7 bits (172), Expect(2) = 9e-023
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1 / -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 501 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 382
Score = 76.2 bits (160), Expect(2) = 4e-021
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +3 / +1
Query: 387 ITVTIKATDHLRYLRICPDEIIYCSHSFXIPXXXISFTXXIK*EEELNXII 539
I VTIKA DHL YLRI PDEI++C HSF IP ISF+ IK*+EE N II
Sbjct: 388 IPVTIKAMDHL*YLRIRPDEIMHCGHSFKIPRRDISFSNFIK*KEECNHII 540
Score = 48.7 bits (100), Expect(2) = 9e-023
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = -1 / -3
Query: 386 DKPRGFPQHCISMQHVAGA*EVRM 315
D P GFP HCI MQHVAGA*EVRM
Sbjct: 382 D*P*GFPHHCIPMQHVAGA*EVRM 311
Score = 48.7 bits (100), Expect(2) = 4e-021
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1 / +3
Query: 313 VILTSHAPATCCIEIQCCGNPRG 381
+ILTS APATCCI IQ CGNP+G
Sbjct: 309 LILTSQAPATCCIGIQWCGNPQG 377
>gb|AACV01010185.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010185, whole
genome shotgun sequence
Length = 25491
Score = 81.7 bits (172), Expect(2) = 8e-021
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1 / +3
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 1380 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 1499
Score = 48.7 bits (100), Expect(2) = 8e-021
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = -1 / +2
Query: 386 DKPRGFPQHCISMQHVAGA*EVRM 315
D P GFP HCI MQHVAGA*EVRM
Sbjct: 2108 D*P*GFPHHCIPMQHVAGA*EVRM 2179
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,238,764,348
Number of Sequences: 438736
Number of extensions: 44872936
Number of successful extensions: 208215
Number of sequences better than 1.0e-020: 4
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 109871220657
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)