TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK119455.1| Oryza sativa (japonica cultivar-group) cDNA... 336 2e-091
ref|XM_467805.1| Oryza sativa (japonica cultivar-group), mRNA 336 2e-091
gb|AACV01005424.1| Oryza sativa (japonica cultivar-group) c... 105 4e-066
dbj|AP004089.1| Oryza sativa (japonica cultivar-group) chro... 105 2e-063
dbj|AP004774.3| Oryza sativa (japonica cultivar-group) geno... 105 5e-063
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 105 4e-056
gb|AQ291230.1|AQ291230 nbxb0038F17r CUGI Rice BAC Library O... 90 1e-042
gb|AQ686879.1|AQ686879 nbxb0073C16r CUGI Rice BAC Library O... 101 1e-024
gb|AQ291283.1|AQ291283 nbxb0038B02r CUGI Rice BAC Library O... 90 6e-023
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 105 8e-021
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 105 8e-021
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 105 8e-021
>dbj|AK119455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E02, full
insert sequence
Length = 2852
Score = 336 bits (727), Expect(2) = 2e-091
Identities = 140/154 (90%), Positives = 149/154 (96%)
Frame = -3 / +3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+E+TIVVYVDHLL+QK +IKEETIERMRLDEEVLMDFFREHINVTKVE+RVRILAD
Sbjct: 2154 VEACLEQTIVVYVDHLLTQKGHIKEETIERMRLDEEVLMDFFREHINVTKVETRVRILAD 2333
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLDSFTLIYTNILEHQPDCPPEV KLV MREGIP+KEAKEVVQECKEIYEN
Sbjct: 2334 LRELASAESLDSFTLIYTNILEHQPDCPPEVVEKLVGMREGIPRKEAKEVVQECKEIYEN 2513
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
SLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 2514 SLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 2615
Score = 272 bits (588), Expect = 3e-071
Identities = 113/157 (71%), Positives = 123/157 (78%)
Frame = +3 / -1
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPH 401
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL GFL WNAFPH
Sbjct: 2624 SRHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNLFGFLPWNAFPH 2445
Query: 402 CHKLIKNLRRAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHK 581
HKL+ NLRRAI LMFQ I +NESK IQTLS*S LP I QNPHS FNFCH++VF E+IHK
Sbjct: 2444 SHKLLNNLRRAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNFCHINVFSEKIHK 2265
Query: 582 HLFI*PHPLYRFFFYVVFLRKEMVNIDHNCFLYASLH 692
H FI PHP FFFY+ FL KEM+N+ HNC L ASLH
Sbjct: 2264 HFFIKPHPFDCFFFYMAFLSKEMINVYHNCLLQASLH 2154
Score = 219 bits (473), Expect = 3e-055
Identities = 102/154 (66%), Positives = 112/154 (72%)
Frame = -1 / +1
Query: 694 VWRLA*RKQLWSMLTISFLXXXXXXXXXXRG*G*MKRCLWISSGNTST*QKLKAECGFWQ 515
+WRLA KQLW L IS L +G*G MK+CLWI S NT *QKLK ECGFW
Sbjct: 2152 LWRLAWSKQLWYTLIISLLRKAI*KKKQSKG*GLMKKCLWIFSENTLM*QKLKPECGFWL 2331
Query: 514 I*GS*LQLRVWIALLSFTLIYWNINLIARLRFFISLWQCGKAFQKRKPRRLYKNAKRYTR 335
I*GS LQLRVWI LLSF I+WNIN IARLR SLW+ GKAFQ RKP+RLYK+A++YTR
Sbjct: 2332 I*GSLLQLRVWIVLLSFIQIFWNINQIARLRLLRSLWE*GKAFQGRKPKRLYKSARKYTR 2511
Query: 334 TRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
T L TL+S VLCLAN*SA*Q KAYG SL SK
Sbjct: 2512 TLL*TGTLKSLVLCLAN*SA*QHGKAYGASLDSK 2613
Score = 197 bits (424), Expect = 1e-048
Identities = 93/153 (60%), Positives = 96/153 (62%)
Frame = +1 / -2
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL 414
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTTSLASF GMPS I TS
Sbjct: 2611 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTTSLASFLGMPSLIPTSF 2432
Query: 415 *KTSGGQSG*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXX 594
TSGGQSG*CS I V*MRV TL+STFVTLMC
Sbjct: 2431 STTSGGQSG*CSRIFV*MRVKLSRLSAEASSLRSARIRTLVSTFVTLMCSLKKSISTSSS 2252
Query: 595 XXXXXXXXXFM*FF*ERRWST*TTIVSSMQAST 693
F+ F* RR ST TTIV S QAST
Sbjct: 2251 SLILSIVSSFIWPF*VRR*STYTTIVCSRQAST 2153
Score = 182 bits (392), Expect(2) = 2e-049
Identities = 81/117 (69%), Positives = 93/117 (79%)
Frame = -2 / +2
Query: 582 AYGFLQGTHQRDKS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LPA*GFL*ACG 403
AYGF Q TH DKS* QSADSG +GA FS*E G* YSHL+ Y+GTST LPA*G ACG
Sbjct: 2264 AYGFFQRTH*CDKS*NQSADSG*SKGACFS*ESG*FYSHLYKYSGTSTRLPA*GC*EACG 2443
Query: 402 NAGRHSKKGSQGGCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
N GRHSK+GSQ GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 2444 NEGRHSKEGSQRGCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 2614
Score = 138 bits (295), Expect(2) = 3e-032
Identities = 65/95 (68%), Positives = 72/95 (75%)
Frame = +2 / -3
Query: 299 NRTSEGCHPQASSRISLCILVQPPWLPFLECLPALPQAYKKPQAGNQVDVPVY*CK*E*S 478
N+T EG Q SSRI C LVQP WLP LECLP+ PQA ++PQAGN VDVP Y K*E*+
Sbjct: 2547 NQTFEGSRLQESSRIFPCTLVQPLWLPSLECLPSFPQASQQPQAGNLVDVPEYLYK*E*N 2368
Query: 479 YPNSQLKLAPSYLPESALCFQLLSR*CVP*RNP*A 583
YP+SQLK AP PESAL FQLLS *CV *+NP*A
Sbjct: 2367 YPDSQLKQAPLDQPESALWFQLLSH*CVL*KNP*A 2263
Score = 37.7 bits (76), Expect(2) = 2e-049
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2 / +2
Query: 693 CGGLHRGNNCGLC*PSPFSEKLHK 622
CGGL NNCG+ * SP+SE+ +K
Sbjct: 2153 CGGLPGANNCGIR*SSPYSERPYK 2224
Score = 24.9 bits (48), Expect(2) = 3e-032
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2 / -3
Query: 638 EKGDGQHRPQLFPLCKPP 691
E GD Q PQLF KPP
Sbjct: 2208 E*GDDQRIPQLFAPGKPP 2155
Score = 24.4 bits (47), Expect(2) = 2e-091
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1 / +1
Query: 181 FHFSMIILLFFCRCY 137
FH +IILLF C Y
Sbjct: 2662 FHVHVIILLFIC*AY 2706
>ref|XM_467805.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2852
Score = 336 bits (727), Expect(2) = 2e-091
Identities = 140/154 (90%), Positives = 149/154 (96%)
Frame = -3 / +3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+E+TIVVYVDHLL+QK +IKEETIERMRLDEEVLMDFFREHINVTKVE+RVRILAD
Sbjct: 2154 VEACLEQTIVVYVDHLLTQKGHIKEETIERMRLDEEVLMDFFREHINVTKVETRVRILAD 2333
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLDSFTLIYTNILEHQPDCPPEV KLV MREGIP+KEAKEVVQECKEIYEN
Sbjct: 2334 LRELASAESLDSFTLIYTNILEHQPDCPPEVVEKLVGMREGIPRKEAKEVVQECKEIYEN 2513
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
SLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 2514 SLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 2615
Score = 272 bits (589), Expect = 2e-071
Identities = 113/157 (71%), Positives = 123/157 (78%)
Frame = +3 / -1
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPH 401
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL GFL WNAFPH
Sbjct: 2624 SQHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNLFGFLPWNAFPH 2445
Query: 402 CHKLIKNLRRAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHK 581
HKL+ NLRRAI LMFQ I +NESK IQTLS*S LP I QNPHS FNFCH++VF E+IHK
Sbjct: 2444 SHKLLNNLRRAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNFCHINVFSEKIHK 2265
Query: 582 HLFI*PHPLYRFFFYVVFLRKEMVNIDHNCFLYASLH 692
H FI PHP FFFY+ FL KEM+N+ HNC L ASLH
Sbjct: 2264 HFFIKPHPFDCFFFYMAFLSKEMINVYHNCLLQASLH 2154
Score = 219 bits (473), Expect = 3e-055
Identities = 102/154 (66%), Positives = 112/154 (72%)
Frame = -1 / +1
Query: 694 VWRLA*RKQLWSMLTISFLXXXXXXXXXXRG*G*MKRCLWISSGNTST*QKLKAECGFWQ 515
+WRLA KQLW L IS L +G*G MK+CLWI S NT *QKLK ECGFW
Sbjct: 2152 LWRLAWSKQLWYTLIISLLRKAI*KKKQSKG*GLMKKCLWIFSENTLM*QKLKPECGFWL 2331
Query: 514 I*GS*LQLRVWIALLSFTLIYWNINLIARLRFFISLWQCGKAFQKRKPRRLYKNAKRYTR 335
I*GS LQLRVWI LLSF I+WNIN IARLR SLW+ GKAFQ RKP+RLYK+A++YTR
Sbjct: 2332 I*GSLLQLRVWIVLLSFIQIFWNINQIARLRLLRSLWE*GKAFQGRKPKRLYKSARKYTR 2511
Query: 334 TRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
T L TL+S VLCLAN*SA*Q KAYG SL SK
Sbjct: 2512 TLL*TGTLKSLVLCLAN*SA*QHGKAYGASLDSK 2613
Score = 197 bits (424), Expect = 1e-048
Identities = 93/153 (60%), Positives = 96/153 (62%)
Frame = +1 / -2
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL 414
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTTSLASF GMPS I TS
Sbjct: 2611 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTTSLASFLGMPSLIPTSF 2432
Query: 415 *KTSGGQSG*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXX 594
TSGGQSG*CS I V*MRV TL+STFVTLMC
Sbjct: 2431 STTSGGQSG*CSRIFV*MRVKLSRLSAEASSLRSARIRTLVSTFVTLMCSLKKSISTSSS 2252
Query: 595 XXXXXXXXXFM*FF*ERRWST*TTIVSSMQAST 693
F+ F* RR ST TTIV S QAST
Sbjct: 2251 SLILSIVSSFIWPF*VRR*STYTTIVCSRQAST 2153
Score = 182 bits (392), Expect(2) = 2e-049
Identities = 81/117 (69%), Positives = 93/117 (79%)
Frame = -2 / +2
Query: 582 AYGFLQGTHQRDKS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LPA*GFL*ACG 403
AYGF Q TH DKS* QSADSG +GA FS*E G* YSHL+ Y+GTST LPA*G ACG
Sbjct: 2264 AYGFFQRTH*CDKS*NQSADSG*SKGACFS*ESG*FYSHLYKYSGTSTRLPA*GC*EACG 2443
Query: 402 NAGRHSKKGSQGGCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
N GRHSK+GSQ GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 2444 NEGRHSKEGSQRGCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 2614
Score = 138 bits (295), Expect(2) = 3e-032
Identities = 65/95 (68%), Positives = 72/95 (75%)
Frame = +2 / -3
Query: 299 NRTSEGCHPQASSRISLCILVQPPWLPFLECLPALPQAYKKPQAGNQVDVPVY*CK*E*S 478
N+T EG Q SSRI C LVQP WLP LECLP+ PQA ++PQAGN VDVP Y K*E*+
Sbjct: 2547 NQTFEGSRLQESSRIFPCTLVQPLWLPSLECLPSFPQASQQPQAGNLVDVPEYLYK*E*N 2368
Query: 479 YPNSQLKLAPSYLPESALCFQLLSR*CVP*RNP*A 583
YP+SQLK AP PESAL FQLLS *CV *+NP*A
Sbjct: 2367 YPDSQLKQAPLDQPESALWFQLLSH*CVL*KNP*A 2263
Score = 37.7 bits (76), Expect(2) = 2e-049
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2 / +2
Query: 693 CGGLHRGNNCGLC*PSPFSEKLHK 622
CGGL NNCG+ * SP+SE+ +K
Sbjct: 2153 CGGLPGANNCGIR*SSPYSERPYK 2224
Score = 24.9 bits (48), Expect(2) = 3e-032
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2 / -3
Query: 638 EKGDGQHRPQLFPLCKPP 691
E GD Q PQLF KPP
Sbjct: 2208 E*GDDQRIPQLFAPGKPP 2155
Score = 24.4 bits (47), Expect(2) = 2e-091
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1 / +1
Query: 181 FHFSMIILLFFCRCY 137
FH +IILLF C Y
Sbjct: 2662 FHVHVIILLFIC*AY 2706
>gb|AACV01005424.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005424, whole
genome shotgun sequence
Length = 23750
Score = 105 bits (223), Expect(5) = 4e-066
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / +2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 9827 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 9961
Score = 102 bits (217), Expect(5) = 8e-053
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +1 / -3
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 9957 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 9826
Score = 90.0 bits (190), Expect(5) = 4e-066
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = -3 / +2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
KVE+RVRILAD+RELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 9371 KVETRVRILADLRELASAESLDSFTLIYTNILEHQPDCP 9487
Score = 84.9 bits (179), Expect(4) = 3e-030
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = +3 / -2
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNL 368
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL
Sbjct: 9970 SQHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNL 9824
Score = 79.4 bits (167), Expect(5) = 1e-037
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -2 / +1
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 9826 GCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 9960
Score = 74.8 bits (157), Expect(5) = 1e-037
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -1 / +3
Query: 547 QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIAR 428
+KLK ECGFW I*GS LQLRVWI LLSF I+WNIN IAR
Sbjct: 9369 RKLKPECGFWLI*GSLLQLRVWIVLLSFIQIFWNINQIAR 9488
Score = 73.0 bits (153), Expect(5) = 4e-066
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -3 / +3
Query: 659 YVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVT 546
YV L QK +IKEETIERMRLDEEVLMDFFREHINVT
Sbjct: 9057 YVFPLHLQKGHIKEETIERMRLDEEVLMDFFREHINVT 9170
Score = 68.4 bits (143), Expect(4) = 1e-024
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -1 / +3
Query: 367 RLYKNAKRYTRTRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
RLYK+A++YTRT L TL+S VLCLAN*SA*Q KAYG SL SK
Sbjct: 9825 RLYKSARKYTRTLL*TGTLKSLVLCLAN*SA*QHGKAYGASLDSK 9959
Score = 64.8 bits (135), Expect(5) = 8e-053
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +3 / -2
Query: 429 RAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
RAI LMFQ I +NESK IQTLS*S LP I QNPHS FNF
Sbjct: 9487 RAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNF 9371
Score = 60.6 bits (126), Expect(5) = 8e-053
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3 / -1
Query: 522 NPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVFL 638
N + +CH++VF E+IHKH FI PHP FFFY+ FL
Sbjct: 9194 NGSCKYTYCHINVFSEKIHKHFFIKPHPFDCFFFYMAFL 9078
Score = 56.1 bits (116), Expect(4) = 3e-030
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2 / -1
Query: 419 KPQAGNQVDVPVY*CK*E*SYPNSQLKLAPSYLPESALCFQL 544
K GN VDVP Y K*E*+YP+SQLK AP PESAL FQL
Sbjct: 9497 KKLPGNLVDVPEYLYK*E*NYPDSQLKQAPLDQPESALWFQL 9372
Score = 56.1 bits (116), Expect(4) = 1e-024
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -2 / +1
Query: 546 KS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LP 430
+S* QSADSG +GA FS*E G* YSHL+ Y+GTST LP
Sbjct: 9370 ES*NQSADSG*SKGACFS*ESG*FYSHLYKYSGTSTRLP 9486
Score = 44.6 bits (91), Expect(5) = 8e-053
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / -1
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 9650 LFGFLPWNAFPHSHKLLNNLR 9588
Score = 43.2 bits (88), Expect(4) = 3e-030
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / -3
Query: 353 ILVQPPWLPFLECLPALPQAYKKPQA 430
++ P WLP LECLP+ PQA ++PQA
Sbjct: 9663 VMFLPLWLPSLECLPSFPQASQQPQA 9586
Score = 43.2 bits (88), Expect(5) = 4e-066
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / +3
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 9588 PEVVEKLVGMREGIPRKEAKEV 9653
Score = 42.8 bits (87), Expect(5) = 4e-066
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / +1
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+E+TIVVYVDHLL+Q
Sbjct: 8770 VEACLEQTIVVYVDHLLTQ 8826
Score = 37.7 bits (76), Expect(5) = 1e-037
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / +1
Query: 445 INLIARLRFFISLWQCGKAFQKRKPRR 365
I+ + LR SLW+ GKAFQ RKP+R
Sbjct: 9571 ISTLCSLRLLRSLWE*GKAFQGRKPKR 9651
Score = 36.3 bits (73), Expect(5) = 8e-053
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 636 LRKEMVNIDHNCFLYASLH 692
L KEM+N+ HNC L ASLH
Sbjct: 8826 LSKEMINVYHNCLLQASLH 8770
Score = 36.3 bits (73), Expect(4) = 1e-024
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 429 A*GFL*ACGNAGRHSKKGSQGG 364
A*G ACGN GRHSK+GSQ G
Sbjct: 9587 A*GC*EACGNEGRHSKEGSQRG 9652
Score = 32.7 bits (65), Expect(5) = 1e-037
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 693 CGGLHRGNNCGLC*PSPFS 637
CGGL NNCG+ * SP+S
Sbjct: 8769 CGGLPGANNCGIR*SSPYS 8825
Score = 31.8 bits (63), Expect(5) = 1e-037
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1 / +1
Query: 604 G*G*MKRCLWISSGNTST*Q 545
G*G MK+CLWI S NT *Q
Sbjct: 9112 G*GLMKKCLWIFSENTLM*Q 9171
Score = 29.0 bits (57), Expect(4) = 1e-024
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1 / +2
Query: 694 VWRLA*RKQLWSMLTISFL 638
+WRLA KQLW L IS L
Sbjct: 8768 LWRLAWSKQLWYTLIISLL 8824
Score = 25.4 bits (49), Expect(4) = 3e-030
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 643 RRWST*TTIVSSMQAST 693
RR ST TTIV S QAST
Sbjct: 8819 RR*STYTTIVCSRQAST 8769
>dbj|AP004089.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1308_A10,
*** SEQUENCING IN PROGRESS ***
Length = 111777
Score = 105 bits (223), Expect(5) = 2e-063
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / +2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 56273 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 56407
Score = 102 bits (217), Expect(5) = 3e-050
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +1 / -1
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 56403 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 56272
Score = 90.0 bits (190), Expect(5) = 2e-063
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = -3 / +2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
KVE+RVRILAD+RELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 55817 KVETRVRILADLRELASAESLDSFTLIYTNILEHQPDCP 55933
Score = 84.9 bits (179), Expect(3) = 4e-028
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = +3 / -3
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNL 368
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL
Sbjct: 56416 SQHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNL 56270
Score = 79.4 bits (167), Expect(5) = 4e-035
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -2 / +1
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 56272 GCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 56406
Score = 74.8 bits (157), Expect(5) = 4e-035
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -1 / +3
Query: 547 QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIAR 428
+KLK ECGFW I*GS LQLRVWI LLSF I+WNIN IAR
Sbjct: 55815 RKLKPECGFWLI*GSLLQLRVWIVLLSFIQIFWNINQIAR 55934
Score = 73.0 bits (153), Expect(5) = 2e-063
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -3 / +3
Query: 659 YVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVT 546
YV L QK +IKEETIERMRLDEEVLMDFFREHINVT
Sbjct: 55503 YVFPLHLQKGHIKEETIERMRLDEEVLMDFFREHINVT 55616
Score = 68.4 bits (143), Expect(4) = 1e-022
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -1 / +3
Query: 367 RLYKNAKRYTRTRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
RLYK+A++YTRT L TL+S VLCLAN*SA*Q KAYG SL SK
Sbjct: 56271 RLYKSARKYTRTLL*TGTLKSLVLCLAN*SA*QHGKAYGASLDSK 56405
Score = 64.8 bits (135), Expect(5) = 3e-050
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +3 / -3
Query: 429 RAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
RAI LMFQ I +NESK IQTLS*S LP I QNPHS FNF
Sbjct: 55933 RAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNF 55817
Score = 60.6 bits (126), Expect(5) = 3e-050
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3 / -2
Query: 522 NPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVFL 638
N + +CH++VF E+IHKH FI PHP FFFY+ FL
Sbjct: 55640 NGSCKYTYCHINVFSEKIHKHFFIKPHPFDCFFFYMAFL 55524
Score = 56.1 bits (116), Expect(3) = 4e-028
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2 / -2
Query: 419 KPQAGNQVDVPVY*CK*E*SYPNSQLKLAPSYLPESALCFQL 544
K GN VDVP Y K*E*+YP+SQLK AP PESAL FQL
Sbjct: 55943 KKLPGNLVDVPEYLYK*E*NYPDSQLKQAPLDQPESALWFQL 55818
Score = 56.1 bits (116), Expect(4) = 1e-022
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -2 / +1
Query: 546 KS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LP 430
+S* QSADSG +GA FS*E G* YSHL+ Y+GTST LP
Sbjct: 55816 ES*NQSADSG*SKGACFS*ESG*FYSHLYKYSGTSTRLP 55932
Score = 44.6 bits (91), Expect(5) = 3e-050
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / -2
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 56096 LFGFLPWNAFPHSHKLLNNLR 56034
Score = 43.2 bits (88), Expect(5) = 2e-063
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / +3
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 56034 PEVVEKLVGMREGIPRKEAKEV 56099
Score = 43.2 bits (88), Expect(3) = 4e-028
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / -1
Query: 353 ILVQPPWLPFLECLPALPQAYKKPQA 430
++ P WLP LECLP+ PQA ++PQA
Sbjct: 56109 VMFLPLWLPSLECLPSFPQASQQPQA 56032
Score = 42.8 bits (87), Expect(5) = 2e-063
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / +1
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+E+TIVVYVDHLL+Q
Sbjct: 55216 VEACLEQTIVVYVDHLLTQ 55272
Score = 37.7 bits (76), Expect(5) = 4e-035
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / +1
Query: 445 INLIARLRFFISLWQCGKAFQKRKPRR 365
I+ + LR SLW+ GKAFQ RKP+R
Sbjct: 56017 ISTLCSLRLLRSLWE*GKAFQGRKPKR 56097
Score = 36.3 bits (73), Expect(5) = 3e-050
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / -1
Query: 636 LRKEMVNIDHNCFLYASLH 692
L KEM+N+ HNC L ASLH
Sbjct: 55272 LSKEMINVYHNCLLQASLH 55216
Score = 36.3 bits (73), Expect(4) = 1e-022
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 429 A*GFL*ACGNAGRHSKKGSQGG 364
A*G ACGN GRHSK+GSQ G
Sbjct: 56033 A*GC*EACGNEGRHSKEGSQRG 56098
Score = 32.7 bits (65), Expect(5) = 4e-035
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 693 CGGLHRGNNCGLC*PSPFS 637
CGGL NNCG+ * SP+S
Sbjct: 55215 CGGLPGANNCGIR*SSPYS 55271
Score = 31.8 bits (63), Expect(5) = 4e-035
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1 / +1
Query: 604 G*G*MKRCLWISSGNTST*Q 545
G*G MK+CLWI S NT *Q
Sbjct: 55558 G*GLMKKCLWIFSENTLM*Q 55617
Score = 29.0 bits (57), Expect(4) = 1e-022
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1 / +2
Query: 694 VWRLA*RKQLWSMLTISFL 638
+WRLA KQLW L IS L
Sbjct: 55214 LWRLAWSKQLWYTLIISLL 55270
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0431B06
Length = 154796
Score = 105 bits (223), Expect(5) = 5e-063
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 10456 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 10322
Score = 102 bits (217), Expect(5) = 1e-049
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +1 / +3
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 10326 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 10457
Score = 90.0 bits (190), Expect(5) = 5e-063
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = -3 / -2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
KVE+RVRILAD+RELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 10912 KVETRVRILADLRELASAESLDSFTLIYTNILEHQPDCP 10796
Score = 84.9 bits (179), Expect(3) = 7e-028
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = +3 / +2
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNL 368
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL
Sbjct: 10313 SQHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNL 10459
Score = 79.4 bits (167), Expect(5) = 1e-034
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -2 / -1
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 10457 GCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 10323
Score = 74.8 bits (157), Expect(5) = 1e-034
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -1 / -3
Query: 547 QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIAR 428
+KLK ECGFW I*GS LQLRVWI LLSF I+WNIN IAR
Sbjct: 10914 RKLKPECGFWLI*GSLLQLRVWIVLLSFIQIFWNINQIAR 10795
Score = 73.0 bits (153), Expect(5) = 5e-063
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -3 / -3
Query: 659 YVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVT 546
YV L QK +IKEETIERMRLDEEVLMDFFREHINVT
Sbjct: 11226 YVFPLHLQKGHIKEETIERMRLDEEVLMDFFREHINVT 11113
Score = 68.4 bits (143), Expect(4) = 3e-022
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -1 / -3
Query: 367 RLYKNAKRYTRTRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
RLYK+A++YTRT L TL+S VLCLAN*SA*Q KAYG SL SK
Sbjct: 10458 RLYKSARKYTRTLL*TGTLKSLVLCLAN*SA*QHGKAYGASLDSK 10324
Score = 64.8 bits (135), Expect(5) = 1e-049
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +3 / +2
Query: 429 RAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
RAI LMFQ I +NESK IQTLS*S LP I QNPHS FNF
Sbjct: 10796 RAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNF 10912
Score = 60.6 bits (126), Expect(5) = 1e-049
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3 / +1
Query: 522 NPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVFL 638
N + +CH++VF E+IHKH FI PHP FFFY+ FL
Sbjct: 11089 NGSCKYTYCHINVFSEKIHKHFFIKPHPFDCFFFYMAFL 11205
Score = 56.1 bits (116), Expect(4) = 3e-022
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -2 / -1
Query: 546 KS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LP 430
+S* QSADSG +GA FS*E G* YSHL+ Y+GTST LP
Sbjct: 10913 ES*NQSADSG*SKGACFS*ESG*FYSHLYKYSGTSTRLP 10797
Score = 56.1 bits (116), Expect(3) = 7e-028
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2 / +1
Query: 419 KPQAGNQVDVPVY*CK*E*SYPNSQLKLAPSYLPESALCFQL 544
K GN VDVP Y K*E*+YP+SQLK AP PESAL FQL
Sbjct: 10786 KKLPGNLVDVPEYLYK*E*NYPDSQLKQAPLDQPESALWFQL 10911
Score = 44.6 bits (91), Expect(5) = 1e-049
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 10633 LFGFLPWNAFPHSHKLLNNLR 10695
Score = 43.2 bits (88), Expect(5) = 5e-063
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / -3
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 10695 PEVVEKLVGMREGIPRKEAKEV 10630
Score = 43.2 bits (88), Expect(3) = 7e-028
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 353 ILVQPPWLPFLECLPALPQAYKKPQA 430
++ P WLP LECLP+ PQA ++PQA
Sbjct: 10620 VMFLPLWLPSLECLPSFPQASQQPQA 10697
Score = 42.8 bits (87), Expect(5) = 5e-063
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / -1
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+E+TIVVYVDHLL+Q
Sbjct: 11513 VEACLEQTIVVYVDHLLTQ 11457
Score = 37.7 bits (76), Expect(5) = 1e-034
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 445 INLIARLRFFISLWQCGKAFQKRKPRR 365
I+ + LR SLW+ GKAFQ RKP+R
Sbjct: 10712 ISTLCSLRLLRSLWE*GKAFQGRKPKR 10632
Score = 36.3 bits (73), Expect(4) = 3e-022
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2 / -2
Query: 429 A*GFL*ACGNAGRHSKKGSQGG 364
A*G ACGN GRHSK+GSQ G
Sbjct: 10696 A*GC*EACGNEGRHSKEGSQRG 10631
Score = 36.3 bits (73), Expect(5) = 1e-049
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 636 LRKEMVNIDHNCFLYASLH 692
L KEM+N+ HNC L ASLH
Sbjct: 11457 LSKEMINVYHNCLLQASLH 11513
Score = 32.7 bits (65), Expect(5) = 1e-034
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / -3
Query: 693 CGGLHRGNNCGLC*PSPFS 637
CGGL NNCG+ * SP+S
Sbjct: 11514 CGGLPGANNCGIR*SSPYS 11458
Score = 31.8 bits (63), Expect(5) = 1e-034
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1 / -1
Query: 604 G*G*MKRCLWISSGNTST*Q 545
G*G MK+CLWI S NT *Q
Sbjct: 11171 G*GLMKKCLWIFSENTLM*Q 11112
Score = 29.0 bits (57), Expect(4) = 3e-022
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1 / -2
Query: 694 VWRLA*RKQLWSMLTISFL 638
+WRLA KQLW L IS L
Sbjct: 11515 LWRLAWSKQLWYTLIISLL 11459
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 105 bits (223), Expect(5) = 4e-056
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 6684895 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 6684761
Score = 102 bits (217), Expect(5) = 7e-043
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +1 / +3
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 6684765 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 6684896
Score = 90.0 bits (190), Expect(5) = 4e-056
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = -3 / -2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
KVE+RVRILAD+RELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 6685351 KVETRVRILADLRELASAESLDSFTLIYTNILEHQPDCP 6685235
Score = 84.9 bits (179), Expect(3) = 2e-024
Identities = 36/49 (73%), Positives = 38/49 (77%)
Frame = +3 / +2
Query: 222 SSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNL 368
S HLL KL PYAF CC ALQFAKHKT LLRV ++KRVLVY A LYNL
Sbjct: 6684752 SQHHLLSKLAPYAFPCC*ALQFAKHKTRLLRVPVYKRVLVYFLALLYNL 6684898
Score = 79.4 bits (167), Expect(4) = 3e-027
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -2 / -1
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVS 232
GCTR+Q +IREL+C +PS+V FCVWQIEV +S ERHME+AW V+
Sbjct: 6684896 GCTRVQGNIRELSCRREPSKVWFCVWQIEVPNSTERHMEQAWTVN 6684762
Score = 74.8 bits (157), Expect(4) = 3e-027
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -1 / -3
Query: 547 QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIAR 428
+KLK ECGFW I*GS LQLRVWI LLSF I+WNIN IAR
Sbjct: 6685353 RKLKPECGFWLI*GSLLQLRVWIVLLSFIQIFWNINQIAR 6685234
Score = 73.0 bits (153), Expect(5) = 4e-056
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -3 / -3
Query: 659 YVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVT 546
YV L QK +IKEETIERMRLDEEVLMDFFREHINVT
Sbjct: 6685665 YVFPLHLQKGHIKEETIERMRLDEEVLMDFFREHINVT 6685552
Score = 64.8 bits (135), Expect(5) = 7e-043
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +3 / +2
Query: 429 RAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
RAI LMFQ I +NESK IQTLS*S LP I QNPHS FNF
Sbjct: 6685235 RAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNF 6685351
Score = 60.6 bits (126), Expect(5) = 7e-043
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3 / +1
Query: 522 NPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVFL 638
N + +CH++VF E+IHKH FI PHP FFFY+ FL
Sbjct: 6685528 NGSCKYTYCHINVFSEKIHKHFFIKPHPFDCFFFYMAFL 6685644
Score = 56.1 bits (116), Expect(3) = 2e-024
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2 / +1
Query: 419 KPQAGNQVDVPVY*CK*E*SYPNSQLKLAPSYLPESALCFQL 544
K GN VDVP Y K*E*+YP+SQLK AP PESAL FQL
Sbjct: 6685225 KKLPGNLVDVPEYLYK*E*NYPDSQLKQAPLDQPESALWFQL 6685350
Score = 44.6 bits (91), Expect(5) = 7e-043
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 6685072 LFGFLPWNAFPHSHKLLNNLR 6685134
Score = 43.2 bits (88), Expect(3) = 2e-024
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 353 ILVQPPWLPFLECLPALPQAYKKPQA 430
++ P WLP LECLP+ PQA ++PQA
Sbjct: 6685059 VMFLPLWLPSLECLPSFPQASQQPQA 6685136
Score = 43.2 bits (88), Expect(5) = 4e-056
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / -3
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 6685134 PEVVEKLVGMREGIPRKEAKEV 6685069
Score = 42.8 bits (87), Expect(5) = 4e-056
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / -1
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+E+TIVVYVDHLL+Q
Sbjct: 6685952 VEACLEQTIVVYVDHLLTQ 6685896
Score = 37.7 bits (76), Expect(4) = 3e-027
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 445 INLIARLRFFISLWQCGKAFQKRKPRR 365
I+ + LR SLW+ GKAFQ RKP+R
Sbjct: 6685151 ISTLCSLRLLRSLWE*GKAFQGRKPKR 6685071
Score = 36.3 bits (73), Expect(5) = 7e-043
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 636 LRKEMVNIDHNCFLYASLH 692
L KEM+N+ HNC L ASLH
Sbjct: 6685896 LSKEMINVYHNCLLQASLH 6685952
Score = 32.7 bits (65), Expect(4) = 3e-027
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / -3
Query: 693 CGGLHRGNNCGLC*PSPFS 637
CGGL NNCG+ * SP+S
Sbjct: 6685953 CGGLPGANNCGIR*SSPYS 6685897
>gb|AQ291230.1|AQ291230 nbxb0038F17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038F17r, DNA sequence
Length = 812
Score = 90.0 bits (190), Expect(3) = 1e-042
Identities = 37/39 (94%), Positives = 39/39 (100%)
Frame = -3 / -2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
KVE+RVRILAD+RELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 616 KVETRVRILADLRELASAESLDSFTLIYTNILEHQPDCP 500
Score = 85.8 bits (181), Expect(3) = 1e-042
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKG 258
VVQECKEIYENSLVDGNPQKSG VFGKLKCLTA+KG
Sbjct: 160 VVQECKEIYENSLVDGNPQKSGLVFGKLKCLTARKG 53
Score = 84.0 bits (177), Expect(3) = 5e-035
Identities = 33/46 (71%), Positives = 37/46 (80%)
Frame = +1 / +3
Query: 229 HTYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
H+ + +PF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 24 HSLILTLAPLPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 161
Score = 74.8 bits (157), Expect(3) = 7e-028
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = -1 / -3
Query: 547 QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIAR 428
+KLK ECGFW I*GS LQLRVWI LLSF I+WNIN IAR
Sbjct: 618 RKLKPECGFWLI*GSLLQLRVWIVLLSFIQIFWNINQIAR 499
Score = 64.8 bits (135), Expect(3) = 5e-035
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = +3 / +2
Query: 429 RAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
RAI LMFQ I +NESK IQTLS*S LP I QNPHS FNF
Sbjct: 500 RAIWLMFQNICINESKTIQTLS*SKLP*ISQNPHSGFNF 616
Score = 64.8 bits (135), Expect(3) = 2e-026
Identities = 29/51 (56%), Positives = 34/51 (66%)
Frame = +3 / +2
Query: 216 LCSSPHLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNL 368
+C+ P + AF CC ALQFAKH T LLRV ++KRVLVY A LYNL
Sbjct: 11 VCNLPLINTHACSIAFPCC*ALQFAKH*TRLLRVPVYKRVLVYFLALLYNL 163
Score = 56.5 bits (117), Expect(3) = 7e-028
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = -2 / -1
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKER 259
GCTR+Q +IREL+C +PS+V F VWQIEV +S ER
Sbjct: 161 GCTRVQGNIRELSCRREPSKVWFSVWQIEVPNSTER 54
Score = 56.1 bits (116), Expect(3) = 2e-026
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2 / +1
Query: 419 KPQAGNQVDVPVY*CK*E*SYPNSQLKLAPSYLPESALCFQL 544
K GN VDVP Y K*E*+YP+SQLK AP PESAL FQL
Sbjct: 490 KKLPGNLVDVPEYLYK*E*NYPDSQLKQAPLDQPESALWFQL 615
Score = 44.6 bits (91), Expect(3) = 5e-035
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 337 LFGFLPWNAFPHSHKLLNNLR 399
Score = 43.2 bits (88), Expect(3) = 1e-042
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / -3
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 399 PEVVEKLVGMREGIPRKEAKEV 334
Score = 43.2 bits (88), Expect(3) = 2e-026
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 353 ILVQPPWLPFLECLPALPQAYKKPQA 430
++ P WLP LECLP+ PQA ++PQA
Sbjct: 324 VMFLPLWLPSLECLPSFPQASQQPQA 401
Score = 37.7 bits (76), Expect(3) = 7e-028
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 445 INLIARLRFFISLWQCGKAFQKRKPRR 365
I+ + LR SLW+ GKAFQ RKP+R
Sbjct: 416 ISTLCSLRLLRSLWE*GKAFQGRKPKR 336
>gb|AQ686879.1|AQ686879 nbxb0073C16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0073C16r, DNA sequence
Length = 636
Score = 101 bits (215), Expect(3) = 1e-024
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = -3 / +2
Query: 359 QECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
QECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 224 QECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 352
Score = 97.7 bits (207), Expect(2) = 8e-022
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +1 / -1
Query: 235 YCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSC 360
YCPS LHMPF AV+HFNLPNTKPDF*G PST EFSYISLHSC
Sbjct: 348 YCPSLLHMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSC 223
Score = 31.8 bits (63), Expect(2) = 8e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / -1
Query: 353 ILVQPPWLPFLECLPALP 406
++ P WLP LECLP+ P
Sbjct: 54 VMFLPLWLPSLECLPSFP 1
Score = 31.3 bits (62), Expect(3) = 1e-024
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3 / +3
Query: 401 MREGIPKKEAKEV 363
MREGIP+KEAKEV
Sbjct: 6 MREGIPRKEAKEV 44
Score = 24.4 bits (47), Expect(3) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 181 FHFSMIILLFFCRCY 137
FH +IILLF C Y
Sbjct: 399 FHVHVIILLFIC*AY 443
>gb|AQ291283.1|AQ291283 nbxb0038B02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038B02r, DNA sequence
Length = 724
Score = 90.4 bits (191), Expect(2) = 6e-023
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -3 / -3
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGI 255
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGI
Sbjct: 113 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGI 3
Score = 88.1 bits (186), Expect(2) = 1e-022
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1 / +1
Query: 253 HMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTT 366
HMPF AV+HFNLPNTKPDF*G PST EFSYISLHSCTT
Sbjct: 1 HMPFRAVRHFNLPNTKPDF*GFPSTREFSYISLHSCTT 114
Score = 44.6 bits (91), Expect(2) = 1e-022
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 366 LLGFLFWNAFPHCHKLIKNLR 428
L GFL WNAFPH HKL+ NLR
Sbjct: 290 LFGFLPWNAFPHSHKLLNNLR 352
Score = 43.2 bits (88), Expect(2) = 6e-023
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / -1
Query: 428 PEVFYKLVAMREGIPKKEAKEV 363
PEV KLV MREGIP+KEAKEV
Sbjct: 352 PEVVEKLVGMREGIPRKEAKEV 287
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 105 bits (223), Expect = 8e-021
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 18082953 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 18082819
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 105 bits (223), Expect = 8e-021
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 31536017 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 31535883
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 105 bits (223), Expect = 8e-021
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3 / -2
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V 231
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ*+
Sbjct: 31519896 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ*M 31519762
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,923,218,948
Number of Sequences: 438736
Number of extensions: 76011142
Number of successful extensions: 388253
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 163365818580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)