TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (j... 214 7e-054
gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (j... 214 7e-054
ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA 214 7e-054
dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA... 212 2e-053
emb|AJ582955.1| Oryza sativa (japonica cultivar-group) part... 212 2e-053
gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (j... 210 8e-053
gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) c... 188 6e-048
dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chro... 188 2e-047
dbj|AP004457.2| Oryza sativa (japonica cultivar-group) geno... 188 3e-047
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 188 4e-046
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 188 4e-046
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 188 4e-046
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 188 4e-046
gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library O... 169 2e-040
gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library O... 169 2e-040
gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing... 156 2e-036
gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (j... 154 8e-036
>gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11L04 3', mRNA sequence
Length = 865
Score = 214 bits (461), Expect = 7e-054
Identities = 85/100 (85%), Positives = 97/100 (97%)
Frame = -3 / -1
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 376 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 197
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV*L 192
P+GLTQRQALY FRFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 196 PIGLTQRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV*L 77
Score = 131 bits (281), Expect = 4e-029
Identities = 63/100 (63%), Positives = 64/100 (64%)
Frame = +1 / +3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 78 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 257
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
HTGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 258 HTGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 377
Score = 110 bits (234), Expect = 1e-022
Identities = 50/114 (43%), Positives = 73/114 (64%)
Frame = +3 / +2
Query: 150 FSKNRGENVKPRA**LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*F 329
F+ + + K *L+KN+FKLCT M+F++ ++ +I KS+ V L+L DW+N V
Sbjct: 35 FN*RKAQEKKMSRA*LYKNHFKLCTWMIFNVFVKICVISKSELV*CLSLCKADWINFVYL 214
Query: 330 QVIPTSNARGPFILPYRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
Q++PTSN FILP+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 215 QLVPTSNTWWSFILPHRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 376
>gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 5', mRNA sequence
Length = 863
Score = 214 bits (461), Expect = 7e-054
Identities = 85/100 (85%), Positives = 97/100 (97%)
Frame = -3 / +2
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 542 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 721
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV*L 192
P+GLTQRQALY FRFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 722 PIGLTQRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV*L 841
Score = 131 bits (281), Expect = 4e-029
Identities = 63/100 (63%), Positives = 64/100 (64%)
Frame = +1 / -3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 840 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 661
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
HTGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 660 HTGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 541
Score = 109 bits (232), Expect = 3e-022
Identities = 48/100 (48%), Positives = 68/100 (68%)
Frame = +3 / -2
Query: 192 *LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*FQVIPTSNARGPFIL 371
*L+KN+FKLCT M+F++ ++ +I KS+ V L+L DW+N V Q++PTSN FIL
Sbjct: 841 *LYKNHFKLCTWMIFNVFVKICVISKSELV*CLSLCKADWINFVYLQLVPTSNTWWSFIL 662
Query: 372 PYRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
P+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 661 PHRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 542
>ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2097
Score = 214 bits (461), Expect = 7e-054
Identities = 85/100 (85%), Positives = 97/100 (97%)
Frame = -3 / +3
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 1341 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 1520
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV*L 192
P+GLTQRQALY FRFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 1521 PIGLTQRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV*L 1640
Score = 131 bits (281), Expect = 4e-029
Identities = 63/100 (63%), Positives = 64/100 (64%)
Frame = +1 / -3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 1639 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 1460
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
HTGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 1459 HTGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 1340
Score = 110 bits (234), Expect = 1e-022
Identities = 50/114 (43%), Positives = 73/114 (64%)
Frame = +3 / -2
Query: 150 FSKNRGENVKPRA**LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*F 329
F+ + + K *L+KN+FKLCT M+F++ ++ +I KS+ V L+L DW+N V
Sbjct: 1682 FN*RKAQEKKMSRA*LYKNHFKLCTWMIFNVFVKICVISKSELV*CLSLCKADWINFVYL 1503
Query: 330 QVIPTSNARGPFILPYRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
Q++PTSN FILP+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 1502 QLVPTSNTWWSFILPHRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 1341
>dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F22, full
insert sequence
Length = 2097
Score = 212 bits (457), Expect = 2e-053
Identities = 84/100 (84%), Positives = 97/100 (97%)
Frame = -3 / +2
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 1340 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 1519
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV*L 192
P+GLTQRQALY FRFR+D++L++YIKDHPCAKLEVIFV*L
Sbjct: 1520 PIGLTQRQALYQFRFREDADLDKYIKDHPCAKLEVIFV*L 1639
Score = 131 bits (281), Expect = 4e-029
Identities = 63/100 (63%), Positives = 64/100 (64%)
Frame = +1 / -1
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 1638 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 1459
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
HTGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 1458 HTGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 1339
Score = 108 bits (230), Expect = 5e-022
Identities = 49/114 (42%), Positives = 72/114 (63%)
Frame = +3 / -3
Query: 150 FSKNRGENVKPRA**LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*F 329
F+ + + K *L+KN+FKLCT M+F++ ++ + KS+ V L+L DW+N V
Sbjct: 1681 FN*RKAQEKKMSRA*LYKNHFKLCTWMIFNVFVKICVFSKSELV*CLSLCKADWINFVYL 1502
Query: 330 QVIPTSNARGPFILPYRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
Q++PTSN FILP+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 1501 QLVPTSNTWWSFILPHRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 1340
>emb|AJ582955.1| Oryza sativa (japonica cultivar-group) partial mRNA for glycoprotein
3-alpha-L-fucosyltransferase (FUT11 gene)
Length = 1419
Score = 212 bits (457), Expect = 2e-053
Identities = 84/99 (84%), Positives = 96/99 (96%)
Frame = -3 / +1
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 1123 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 1302
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV* 195
P+GLTQRQALY FRFRDD++L++YIKDHPCAKLEVIFV*
Sbjct: 1303 PIGLTQRQALYQFRFRDDADLDKYIKDHPCAKLEVIFV* 1419
Score = 129 bits (277), Expect = 2e-028
Identities = 62/99 (62%), Positives = 63/99 (63%)
Frame = +1 / -2
Query: 196 YTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXFH 375
YTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F FH
Sbjct: 1418 YTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSFH 1239
Query: 376 TGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
TGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 1238 TGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 1122
Score = 108 bits (231), Expect = 4e-022
Identities = 47/99 (47%), Positives = 67/99 (67%)
Frame = +3 / -1
Query: 195 LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*FQVIPTSNARGPFILP 374
L+KN+FKLCT M+F++ ++ +I KS+ V L+L DW+N V Q++PTSN FILP
Sbjct: 1419 LYKNHFKLCTWMIFNVFVKICVISKSELV*CLSLCKADWINFVYLQLVPTSNTWWSFILP 1240
Query: 375 YRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 1239 HRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 1123
>gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04H13 3', mRNA sequence
Length = 861
Score = 210 bits (453), Expect = 8e-053
Identities = 84/100 (84%), Positives = 96/100 (96%)
Frame = -3 / -3
Query: 491 RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
RERGRFK+ESI++RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IY
Sbjct: 826 RERGRFKTESIFLRSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIY 647
Query: 311 PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV*L 192
P+GLTQ QALY FRFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 646 PIGLTQCQALYQFRFRDDADLDKYIKDHPCAKLEVIFV*L 527
Score = 131 bits (281), Expect = 4e-029
Identities = 63/100 (63%), Positives = 64/100 (64%)
Frame = +1 / +3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A* CVRP G*ILY F F
Sbjct: 528 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNA*HCVRPIG*ILYTFNSSPPLILGGLSSF 707
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDLM*MLSDLNRPLSL 492
HTGT L DLNL STADSKAP VNW DL MLS LNRPLSL
Sbjct: 708 HTGT*LSDLNLASTADSKAPIVNWSDLRKMLSVLNRPLSL 827
Score = 111 bits (238), Expect = 4e-023
Identities = 51/114 (44%), Positives = 73/114 (64%)
Frame = +3 / +2
Query: 150 FSKNRGENVKPRA**LHKNYFKLCTGMVFDILLEFRIIPKSKTVQSLTLR*TDWVNSV*F 329
F+ + + K *L+KN+FKLCT M+F++ ++ +I KS+ V LTL DW+N V
Sbjct: 485 FN*RKAQEKKMSRA*LYKNHFKLCTWMIFNVFVKICVISKSELV*CLTLCKADWINFVYL 664
Query: 330 QVIPTSNARGPFILPYRNVVEGPKFTEHCGFQGSQS*LA*SHVNAL*LKPPSLS 491
Q++PTSN FILP+RN++E KF++H Q + S*L NAL L+PPS S
Sbjct: 665 QLVPTSNTWWSFILPHRNMIERSKFSKHSRLQSTHS*LVRPQKNALCLEPPSFS 826
>gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018706, whole
genome shotgun sequence
Length = 24223
Score = 188 bits (405), Expect(2) = 6e-048
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / -3
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 11345 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 11166
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 11165 RFRDDADLDKYIKDHPCAKLEVIFV*L 11085
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / +1
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 11086 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 11265
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 11266 HTGT*LSDLNLASTADSKAPIVNWSDL 11346
Score = 32.7 bits (65), Expect(2) = 6e-048
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -3 / -1
Query: 491 RERGRFKSESIYMRSG 444
RERGRFK+ESI++R G
Sbjct: 12820 RERGRFKTESIFLRYG 12773
>dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1320_D12,
*** SEQUENCING IN PROGRESS ***
Length = 89134
Score = 188 bits (405), Expect(2) = 2e-047
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +2
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 22697 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 22876
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 22877 RFRDDADLDKYIKDHPCAKLEVIFV*L 22957
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -2
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 22956 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 22777
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 22776 HTGT*LSDLNLASTADSKAPIVNWSDL 22696
Score = 32.7 bits (65), Expect(2) = 2e-047
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 491 RERGRFKSESIYMRSG 444
RERGRFK+ESI++R G
Sbjct: 21222 RERGRFKTESIFLRYG 21269
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0013B04
Length = 141319
Score = 188 bits (405), Expect(2) = 3e-047
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +3
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 72873 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 73052
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 73053 RFRDDADLDKYIKDHPCAKLEVIFV*L 73133
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -1
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 73132 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 72953
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 72952 HTGT*LSDLNLASTADSKAPIVNWSDL 72872
Score = 32.7 bits (65), Expect(2) = 3e-047
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 491 RERGRFKSESIYMRSG 444
RERGRFK+ESI++R G
Sbjct: 71398 RERGRFKTESIFLRYG 71445
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 188 bits (405), Expect = 4e-046
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +1
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 23035435 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 23035614
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 23035615 RFRDDADLDKYIKDHPCAKLEVIFV*L 23035695
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -1
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 23035694 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 23035515
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 23035514 HTGT*LSDLNLASTADSKAPIVNWSDL 23035434
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 188 bits (405), Expect = 4e-046
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +1
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 14511400 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 14511579
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 14511580 RFRDDADLDKYIKDHPCAKLEVIFV*L 14511660
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 14511659 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 14511480
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 14511479 HTGT*LSDLNLASTADSKAPIVNWSDL 14511399
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 188 bits (405), Expect = 4e-046
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +1
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 22113406 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 22113585
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 22113586 RFRDDADLDKYIKDHPCAKLEVIFV*L 22113666
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -3
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 22113665 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 22113486
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 22113485 HTGT*LSDLNLASTADSKAPIVNWSDL 22113405
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 188 bits (405), Expect = 4e-046
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = -3 / +2
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 23273522 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 23273701
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV*L 192
RFRDD++L++YIKDHPCAKLEVIFV*L
Sbjct: 23273702 RFRDDADLDKYIKDHPCAKLEVIFV*L 23273782
Score = 113 bits (242), Expect = 1e-023
Identities = 53/87 (60%), Positives = 54/87 (62%)
Frame = +1 / -1
Query: 193 SYTKITSSFAQGWSLIYCXXXXXXLNLKPYKA*RCVRPTG*ILYNFRXXXXXXXXXXXXF 372
SYTKITSSFA G SL+Y LNL Y A RCVRP G*ILY F F
Sbjct: 23273781 SYTKITSSFAHG*SLMYLSRSASSLNLNWYNACRCVRPIG*ILYTFNSSPPLILGGLSSF 23273602
Query: 373 HTGTWLRDLNLPSTADSKAPRVNWPDL 453
HTGT L DLNL STADSKAP VNW DL
Sbjct: 23273601 HTGT*LSDLNLASTADSKAPIVNWSDL 23273521
>gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027A03f, DNA sequence
Length = 604
Score = 169 bits (364), Expect = 2e-040
Identities = 65/77 (84%), Positives = 74/77 (96%)
Frame = -3 / -3
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 233 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 54
Query: 272 RFRDDSELEQYIKDHPC 222
RFRDD++L++YIKDHPC
Sbjct: 53 RFRDDADLDKYIKDHPC 3
>gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042F18f, DNA sequence
Length = 616
Score = 169 bits (364), Expect = 2e-040
Identities = 65/77 (84%), Positives = 74/77 (96%)
Frame = -3 / -3
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS QLT+GALESAVL KFRSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY F
Sbjct: 233 RSDQLTMGALESAVLAKFRSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQF 54
Query: 272 RFRDDSELEQYIKDHPC 222
RFRDD++L++YIKDHPC
Sbjct: 53 RFRDDADLDKYIKDHPC 3
>gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-N05, mRNA sequence
Length = 378
Score = 156 bits (335), Expect = 2e-036
Identities = 60/69 (86%), Positives = 68/69 (98%)
Frame = -3 / -1
Query: 398 RSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGFRFRDDSELEQYIKDHPCA 219
RSLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY FRFRDD++L++YIKDHPCA
Sbjct: 378 RSLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQFRFRDDADLDKYIKDHPCA 199
Query: 218 KLEVIFV*L 192
KLEVIFV*L
Sbjct: 198 KLEVIFV*L 172
>gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 3', mRNA sequence
Length = 771
Score = 154 bits (330), Expect = 8e-036
Identities = 59/68 (86%), Positives = 67/68 (98%)
Frame = -3 / -2
Query: 395 SLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGFRFRDDSELEQYIKDHPCAK 216
SLNHVPVWKDERPPSIRGGD+LK+Y+IYP+GLTQRQALY FRFRDD++L++YIKDHPCAK
Sbjct: 770 SLNHVPVWKDERPPSIRGGDELKVYKIYPIGLTQRQALYQFRFRDDADLDKYIKDHPCAK 591
Query: 215 LEVIFV*L 192
LEVIFV*L
Sbjct: 590 LEVIFV*L 567
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,390,519,970
Number of Sequences: 438736
Number of extensions: 47875927
Number of successful extensions: 157247
Number of sequences better than 1.0e-020: 23
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 96250821402
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)