TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP005250.3| Oryza sativa (japonica cultivar-group) geno... 168 6e-041
dbj|AP004591.3| Oryza sativa (japonica cultivar-group) geno... 168 6e-041
gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) c... 168 7e-041
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 168 7e-040
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 168 7e-040
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 168 7e-040
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 168 7e-040
gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (j... 141 1e-031
dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA... 141 1e-031
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 141 1e-031
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 141 1e-031
gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) c... 141 1e-031
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 141 1e-031
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 141 1e-031
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 141 1e-031
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 141 1e-031
gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (j... 136 3e-030
gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (j... 136 3e-030
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 136 3e-030
gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) c... 136 3e-030
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 136 3e-030
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 136 3e-030
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 136 3e-030
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 136 3e-030
dbj|AK120963.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-029
gb|CF308544.1|CF308544 ABF--02-G13.g1 ABF3-overexpressing t... 131 1e-028
gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) c... 131 1e-028
dbj|AP003848.3| Oryza sativa (japonica cultivar-group) geno... 131 1e-028
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 131 1e-028
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 131 1e-028
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 131 1e-028
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 131 1e-028
ref|XM_476980.1| Oryza sativa (japonica cultivar-group), mRNA 128 5e-028
gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germinati... 104 8e-024
gb|CB651517.1|CB651517 OSJNEb16I04.r OSJNEb Oryza sativa (j... 112 5e-023
gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (ja... 98 1e-022
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 90 4e-022
gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) c... 90 4e-022
ref|XM_469993.1| Oryza sativa (japonica cultivar-group), mRNA 90 4e-022
gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering s... 88 2e-021
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0009H02
Length = 155388
Score = 168 bits (361), Expect(2) = 6e-041
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 24446 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 24625
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 24626 CNYR*RDD 24649
Score = 127 bits (271), Expect(2) = 3e-028
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -1
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 24639 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 24460
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 24459 MLTSSIL 24439
Score = 105 bits (223), Expect(2) = 6e-022
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +3
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 24438 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 24617
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 24618 HPAATTDSETTNGLNQSLDFSIPPPP 24695
Score = 23.5 bits (45), Expect(2) = 6e-041
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +3
Query: 457 GWLVFSFSTQ 428
GWLVFSF T+
Sbjct: 24720 GWLVFSFLTR 24749
Score = 23.1 bits (44), Expect(2) = 6e-022
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 464 LGRLAGIFFFDT 429
+G LAG+ FFDT
Sbjct: 24713 VGWLAGVLFFDT 24748
Score = 22.1 bits (42), Expect(2) = 3e-028
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / -3
Query: 432 VEKENTSQP 458
V+KENTSQP
Sbjct: 24745 VKKENTSQP 24719
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0582D05
Length = 150483
Score = 168 bits (361), Expect(2) = 6e-041
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 141585 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 141764
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 141765 CNYR*RDD 141788
Score = 127 bits (271), Expect(2) = 3e-028
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -3
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 141778 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 141599
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 141598 MLTSSIL 141578
Score = 105 bits (223), Expect(2) = 6e-022
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 141577 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 141756
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 141757 HPAATTDSETTNGLNQSLDFSIPPPP 141834
Score = 23.5 bits (45), Expect(2) = 6e-041
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 457 GWLVFSFSTQ 428
GWLVFSF T+
Sbjct: 141859 GWLVFSFLTR 141888
Score = 23.1 bits (44), Expect(2) = 6e-022
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 464 LGRLAGIFFFDT 429
+G LAG+ FFDT
Sbjct: 141852 VGWLAGVLFFDT 141887
Score = 22.1 bits (42), Expect(2) = 3e-028
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / -2
Query: 432 VEKENTSQP 458
V+KENTSQP
Sbjct: 141884 VKKENTSQP 141858
>gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017194, whole
genome shotgun sequence
Length = 26448
Score = 168 bits (361), Expect(2) = 7e-041
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 6792 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 6971
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 6972 CNYR*RDD 6995
Score = 127 bits (271), Expect(2) = 3e-028
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -3
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 6985 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 6806
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 6805 MLTSSIL 6785
Score = 105 bits (223), Expect(2) = 6e-022
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 6784 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 6963
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 6964 HPAATTDSETTNGLNQSLDFSIPPPP 7041
Score = 23.5 bits (45), Expect(2) = 7e-041
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 457 GWLVFSFSTQ 428
GWLVFSF T+
Sbjct: 7066 GWLVFSFLTR 7095
Score = 23.1 bits (44), Expect(2) = 6e-022
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 464 LGRLAGIFFFDT 429
+G LAG+ FFDT
Sbjct: 7059 VGWLAGVLFFDT 7094
Score = 22.1 bits (42), Expect(2) = 3e-028
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / -2
Query: 432 VEKENTSQP 458
V+KENTSQP
Sbjct: 7091 VKKENTSQP 7065
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 168 bits (361), Expect = 7e-040
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 1509611 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 1509790
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 1509791 CNYR*RDD 1509814
Score = 127 bits (271), Expect = 2e-027
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -3
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 1509804 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 1509625
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 1509624 MLTSSIL 1509604
Score = 105 bits (223), Expect = 8e-021
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +3
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 1509603 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 1509782
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 1509783 HPAATTDSETTNGLNQSLDFSIPPPP 1509860
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 168 bits (361), Expect = 7e-040
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 1715787 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 1715966
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 1715967 CNYR*RDD 1715990
Score = 127 bits (271), Expect = 2e-027
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -1
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 1715980 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 1715801
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 1715800 MLTSSIL 1715780
Score = 105 bits (223), Expect = 8e-021
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 1715779 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 1715958
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 1715959 HPAATTDSETTNGLNQSLDFSIPPPP 1716036
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 168 bits (361), Expect = 7e-040
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 1715787 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 1715966
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 1715967 CNYR*RDD 1715990
Score = 127 bits (271), Expect = 2e-027
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -1
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 1715980 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 1715801
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 1715800 MLTSSIL 1715780
Score = 105 bits (223), Expect = 8e-021
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 1715779 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 1715958
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 1715959 HPAATTDSETTNGLNQSLDFSIPPPP 1716036
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 168 bits (361), Expect = 7e-040
Identities = 61/68 (89%), Positives = 67/68 (98%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVEKFNST+PV+YSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLV+G+ASC
Sbjct: 1742085 EDVSMGLWVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVQGRASC 1742264
Query: 537 CNYR*QSE 514
CNYR*+ +
Sbjct: 1742265 CNYR*RDD 1742288
Score = 127 bits (271), Expect = 2e-027
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = +2 / -3
Query: 524 YL*LQQDA*PRTNLSHKHSICLGD**WAV**FSRQPYWQNFQLWEYWTGFVELNFSTHRP 703
YL*LQQDA P T+LS +HSICLGD * AV**FSRQPYWQNFQLWEY TG VELNFSTH P
Sbjct: 1742278 YL*LQQDARPWTSLSQRHSICLGDW*CAV**FSRQPYWQNFQLWEYLTGDVELNFSTHSP 1742099
Query: 704 MLTSSLV 724
MLTSS++
Sbjct: 1742098 MLTSSIL 1742078
Score = 105 bits (223), Expect = 8e-021
Identities = 46/86 (53%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 725 ARGKM*AWAYGSRSSIQQILSNIPTAGSSASTVAWRTTTRPTISHPGRCCACGISWSVVR 546
+R + *AW G RSS ++LS+IPTAGSSAST AWRT TR SH G+CCA G SWS
Sbjct: 1742077 SRWRT*AWGCGLRSSTPRLLSSIPTAGSSASTAAWRTITRRITSHRGKCCASGTSWSRAE 1742256
Query: 545 HPAVTTDSRVKLRIAGRCPLFIIPQP 468
HPA TTDS + I P P
Sbjct: 1742257 HPAATTDSETTNGLNQSLDFSIPPPP 1742334
>gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08G03 3', mRNA sequence
Length = 710
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 706 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 527
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 526 CNYR*RS 506
>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
insert sequence
Length = 2495
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 1873 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 2052
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 2053 CNYR*RS 2073
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / -1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 58129 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 57950
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 57949 CNYR*RS 57929
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 2225140 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 2225319
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 2225320 CNYR*RS 2225340
>gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025522, whole
genome shotgun sequence
Length = 26935
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 20433 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 20254
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 20253 CNYR*RS 20233
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 3074329 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 3074508
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 3074509 CNYR*RS 3074529
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 22257975 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 22258154
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 22258155 CNYR*RS 22258175
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 26053542 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 26053721
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 26053722 CNYR*RS 26053742
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 141 bits (302), Expect = 1e-031
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -3 / +2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE FN+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLCLW+KL G+A C
Sbjct: 25981718 EDVSMGMWVEDFNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLCLWNKLSSGRAHC 25981897
Query: 537 CNYR*QS 517
CNYR*+S
Sbjct: 25981898 CNYR*RS 25981918
>gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15L03 3', mRNA sequence
Length = 803
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 780 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 601
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 600 CNMR*R 583
>gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01E07 5', mRNA sequence
Length = 753
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 220 EDVSMGMWVERFNNTTHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 399
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 400 CNMR*R 417
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence,
complete sequence
Length = 144487
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 1237 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 1416
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 1417 CNMR*R 1434
Score = 90.0 bits (190), Expect(2) = 4e-022
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = -3 / +3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ PV+YSH KF Q GC + YYTAHYQSP+QM+CLW KL G A CCN R*
Sbjct: 22464 STRQPVKYSHDVKFFQSGCFDGYYTAHYQSPQQMICLWRKLQFGSAQCCNMR* 22622
Score = 38.6 bits (78), Expect(2) = 4e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVEKFNST
Sbjct: 22425 EDVSMGMWVEKFNST 22469
>gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008116, whole
genome shotgun sequence
Length = 6612
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 1645 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 1466
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 1465 CNMR*R 1448
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 6965895 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 6965716
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 6965715 CNMR*R 6965698
Score = 90.0 bits (190), Expect(2) = 4e-022
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ PV+YSH KF Q GC + YYTAHYQSP+QM+CLW KL G A CCN R*
Sbjct: 6943954 STRQPVKYSHDVKFFQSGCFDGYYTAHYQSPQQMICLWRKLQFGSAQCCNMR* 6943796
Score = 38.6 bits (78), Expect(2) = 4e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVEKFNST
Sbjct: 6943993 EDVSMGMWVEKFNST 6943949
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 34232058 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 34231879
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 34231878 CNMR*R 34231861
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 33333828 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 33333649
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 33333648 CNMR*R 33333631
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 136 bits (291), Expect = 3e-030
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A C
Sbjct: 33243318 EDVSMGMWVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQC 33243139
Query: 537 CNYR*Q 520
CN R*+
Sbjct: 33243138 CNMR*R 33243121
>dbj|AK120963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039P07, full
insert sequence
Length = 2736
Score = 133 bits (285), Expect = 2e-029
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC++NYYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 1999 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDNYYTAHYQSPRLMLCLWQKLLDGKPQC 2178
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 2179 CNMR*Q 2196
>gb|CF308544.1|CF308544 ABF--02-G13.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-G13, mRNA sequence
Length = 507
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 272 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 93
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 92 CNMR*Q 75
>gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015343, whole
genome shotgun sequence
Length = 76647
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 16371 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 16550
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 16551 CNMR*Q 16568
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1715_A07
Length = 130907
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 50969 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 50790
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 50789 CNMR*Q 50772
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 5140327 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 5140148
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 5140147 CNMR*Q 5140130
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 2252493 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 2252314
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 2252313 CNMR*Q 2252296
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 5069242 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 5069063
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 5069062 CNMR*Q 5069045
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 131 bits (280), Expect = 1e-028
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 5184255 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 5184076
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 5184075 CNMR*Q 5184058
>ref|XM_476980.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1992
Score = 128 bits (275), Expect = 5e-028
Identities = 46/65 (70%), Positives = 55/65 (84%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMGLWVE+FN T PV++ HS KFCQ+GC+++YYTAHYQSPR MLCLW KL+ G+ C
Sbjct: 1798 EDVSMGLWVEQFNRTRPVEFVHSTKFCQFGCVDDYYTAHYQSPRLMLCLWQKLLDGKPQC 1977
Query: 537 CNYR* 523
CN R*
Sbjct: 1978 CNMR* 1992
>gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 651
Score = 104 bits (221), Expect(2) = 8e-024
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = -3 / +2
Query: 666 VQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR*Q 520
VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A CCN R*+
Sbjct: 77 VQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQCCNMR*R 223
Score = 30.4 bits (60), Expect(2) = 8e-024
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+W+E+F +T
Sbjct: 25 EDVSMGMWLERFINT 69
>gb|CB651517.1|CB651517 OSJNEb16I04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16I04 3', mRNA sequence
Length = 692
Score = 112 bits (239), Expect = 5e-023
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = -3 / -3
Query: 687 KFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR*Q 520
+FN+T VQY HS KFCQ+GC+++YYTAHYQSPRQMLCLWDKL G+A CCN R*+
Sbjct: 690 RFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQMLCLWDKLQSGKAQCCNMR*R 523
>gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52276_1A, mRNA sequence
Length = 249
Score = 98.2 bits (208), Expect(2) = 1e-022
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLC 574
EDVSMG+ VE N+T PVQY HSW+FCQ+GC+ NY+TAHYQSP QMLC
Sbjct: 36 EDVSMGMXVEXVNTTAPVQYIHSWRFCQFGCVHNYFTAHYQSPWQMLC 179
Score = 31.8 bits (63), Expect(2) = 1e-022
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3 / +2
Query: 573 LWDKLVRGQASCCNYR*QS 517
LW+KL G+A CNYR*+S
Sbjct: 179 LWNKLSSGRAHFCNYR*RS 235
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 90.0 bits (190), Expect(2) = 4e-022
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ PV+YSH KF Q GC + YYTAHYQSP+QM+CLW KL G A CCN R*
Sbjct: 2401475 STRQPVKYSHDVKFFQSGCFDGYYTAHYQSPQQMICLWRKLQFGSAQCCNMR* 2401317
Score = 38.6 bits (78), Expect(2) = 4e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVEKFNST
Sbjct: 2401514 EDVSMGMWVEKFNST 2401470
>gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008115, whole
genome shotgun sequence
Length = 32704
Score = 90.0 bits (190), Expect(2) = 4e-022
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ PV+YSH KF Q GC + YYTAHYQSP+QM+CLW KL G A CCN R*
Sbjct: 12458 STRQPVKYSHDVKFFQSGCFDGYYTAHYQSPQQMICLWRKLQFGSAQCCNMR* 12300
Score = 38.6 bits (78), Expect(2) = 4e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVEKFNST
Sbjct: 12497 EDVSMGMWVEKFNST 12453
>ref|XM_469993.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1956
Score = 90.0 bits (190), Expect(2) = 4e-022
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = -3 / +1
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ PV+YSH KF Q GC + YYTAHYQSP+QM+CLW KL G A CCN R*
Sbjct: 1798 STRQPVKYSHDVKFFQSGCFDGYYTAHYQSPQQMICLWRKLQFGSAQCCNMR* 1956
Score = 38.6 bits (78), Expect(2) = 4e-022
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVEKFNST
Sbjct: 1759 EDVSMGMWVEKFNST 1803
>gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2183, mRNA sequence
Length = 712
Score = 87.7 bits (185), Expect(4) = 2e-021
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -3 / +1
Query: 669 PVQYSHSWKFCQYGCLENYYTAHYQSPRQMLC 574
PV+Y HSWKFCQYGCLENYYTAHYQSPRQMLC
Sbjct: 10 PVKYPHSWKFCQYGCLENYYTAHYQSPRQMLC 105
Score = 28.6 bits (56), Expect(4) = 2e-021
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3 / +3
Query: 555 RGQASCCNYR*QSE 514
+G+ASCCNYR*+ +
Sbjct: 126 QGRASCCNYR*RDD 167
Score = 24.0 bits (46), Expect(4) = 2e-021
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / +1
Query: 151 WRWRPCSCN*SNF 113
WR P SCN*S F
Sbjct: 412 WRLCPYSCN*SQF 450
Score = 23.5 bits (45), Expect(4) = 2e-021
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 457 GWLVFSFSTQ 428
GWLVFSF T+
Sbjct: 238 GWLVFSFLTR 267
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,669,462,842
Number of Sequences: 438736
Number of extensions: 96229624
Number of successful extensions: 437494
Number of sequences better than 1.0e-020: 57
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 165180994342
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)