TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 218 1e-070
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 218 1e-070
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 218 3e-070
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 218 4e-066
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 173 5e-066
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 231 4e-061
gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressin... 146 3e-049
gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) c... 62 8e-041
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 62 1e-040
gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (jap... 170 2e-040
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 62 5e-037
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 62 1e-034
dbj|AP003943.3| Oryza sativa (japonica cultivar-group) geno... 62 5e-033
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 62 1e-032
gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (ja... 82 2e-032
dbj|AK060887.1| Oryza sativa (japonica cultivar-group) cDNA... 142 3e-032
dbj|AK121681.1| Oryza sativa (japonica cultivar-group) cDNA... 142 3e-032
gb|AACV01005829.1| Oryza sativa (japonica cultivar-group) c... 142 3e-032
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 142 3e-032
gb|AC118132.3| Oryza sativa (japonica cultivar-group) chrom... 142 3e-032
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 142 3e-032
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 142 3e-032
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 142 3e-032
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 142 3e-032
gb|AF042333.1|AF042333 Oryza sativa 24-methylene lophenol C... 142 4e-032
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 62 2e-029
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-028
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 62 8e-027
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 62 3e-025
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 62 3e-024
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 62 9e-024
gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid ... 107 1e-021
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase
mRNA, complete cds
Length = 1629
Score = 218 bits (470), Expect(3) = 1e-070
Identities = 88/120 (73%), Positives = 100/120 (83%)
Frame = +2 / +1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 409 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 588
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
RGKEL AG+S C F+K DFM MP SDNTFDA YAI+ATCHAPD G Y E+YRVLKP
Sbjct: 589 RGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKP 768
Score = 147 bits (315), Expect(2) = 1e-039
Identities = 68/120 (56%), Positives = 80/120 (66%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GF+TR* SL* P SG ASKVLS+ G+ MKS F K L PA +SS PL
Sbjct: 767 GFNTR*ISL*QPTGSGAWHVASMA*TASKVLSENGIFMKSAFTKSQVPLTPATRLSSFPL 588
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
+W SLLF+PV + +LNLAIS+ GPPIP PTSKTFIP +P+ A+KC CRLM SR SP
Sbjct: 587 VIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLMLSRRDSP 408
Score = 56.1 bits (116), Expect(3) = 1e-070
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3 / +1
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQYVKYH 200
A V M++SGA+ LA GG I+KD+VKSAVD+Y KYH
Sbjct: 157 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDEYEKYH 276
Score = 43.2 bits (88), Expect(2) = 1e-039
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -1 / -2
Query: 199 WYLTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
WY +Y STADLT SL+I PP A APDL I
Sbjct: 275 WYFSYSSTADLTSSLVIFPPSPDARSMAPDLDI 177
Score = 35.4 bits (71), Expect(3) = 1e-070
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 283 YGGKEEARKSNYTDMVN 333
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 218 bits (470), Expect(3) = 1e-070
Identities = 88/120 (73%), Positives = 100/120 (83%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 335 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 514
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
RGKEL AG+S C F+K DFM MP SDNTFDA YAI+ATCHAPD G Y E+YRVLKP
Sbjct: 515 RGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKP 694
Score = 147 bits (315), Expect(2) = 1e-039
Identities = 68/120 (56%), Positives = 80/120 (66%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GF+TR* SL* P SG ASKVLS+ G+ MKS F K L PA +SS PL
Sbjct: 693 GFNTR*ISL*QPTGSGAWHVASMA*TASKVLSENGIFMKSAFTKSQVPLTPATRLSSFPL 514
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
+W SLLF+PV + +LNLAIS+ GPPIP PTSKTFIP +P+ A+KC CRLM SR SP
Sbjct: 513 VIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLMLSRRDSP 334
Score = 56.1 bits (116), Expect(3) = 1e-070
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3 / +2
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQYVKYH 200
A V M++SGA+ LA GG I+KD+VKSAVD+Y KYH
Sbjct: 83 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDEYEKYH 202
Score = 43.2 bits (88), Expect(2) = 1e-039
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -1 / -2
Query: 199 WYLTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
WY +Y STADLT SL+I PP A APDL I
Sbjct: 201 WYFSYSSTADLTSSLVIFPPSPDARSMAPDLDI 103
Score = 35.4 bits (71), Expect(3) = 1e-070
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 209 YGGKEEARKSNYTDMVN 259
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 218 bits (470), Expect(3) = 3e-070
Identities = 88/120 (73%), Positives = 100/120 (83%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 248 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 427
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
RGKEL AG+S C F+K DFM MP SDNTFDA YAI+ATCHAPD G Y E+YRVLKP
Sbjct: 428 RGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKP 607
Score = 147 bits (315), Expect(2) = 4e-040
Identities = 68/120 (56%), Positives = 80/120 (66%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GF+TR* SL* P SG ASKVLS+ G+ MKS F K L PA +SS PL
Sbjct: 606 GFNTR*ISL*QPTGSGAWHVASMA*TASKVLSENGIFMKSAFTKSQVPLTPATRLSSFPL 427
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
+W SLLF+PV + +LNLAIS+ GPPIP PTSKTFIP +P+ A+KC CRLM SR SP
Sbjct: 426 VIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLMLSRRDSP 247
Score = 55.1 bits (114), Expect(3) = 3e-070
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +3 / +2
Query: 102 MAKSGALQLARSTGGSISKDQVKSAVDQYVKYH 200
M++SGA+ LA GG I+KD+VKSAVD+Y KYH
Sbjct: 17 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYH 115
Score = 43.2 bits (88), Expect(2) = 4e-040
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -1 / -2
Query: 199 WYLTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
WY +Y STADLT SL+I PP A APDL I
Sbjct: 114 WYFSYSSTADLTSSLVIFPPSPDARSMAPDLDI 16
Score = 35.4 bits (71), Expect(3) = 3e-070
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 122 YGGKEEARKSNYTDMVN 172
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 218 bits (470), Expect(3) = 4e-066
Identities = 88/120 (73%), Positives = 100/120 (83%)
Frame = +2 / +1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 1792 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 1971
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
RGKEL AG+S C F+K DFM MP SDNTFDA YAI+ATCHAPD G Y E+YRVLKP
Sbjct: 1972 RGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKP 2151
Score = 147 bits (315), Expect(2) = 5e-037
Identities = 68/120 (56%), Positives = 80/120 (66%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GF+TR* SL* P SG ASKVLS+ G+ MKS F K L PA +SS PL
Sbjct: 2150 GFNTR*ISL*QPTGSGAWHVASMA*TASKVLSENGIFMKSAFTKSQVPLTPATRLSSFPL 1971
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
+W SLLF+PV + +LNLAIS+ GPPIP PTSKTFIP +P+ A+KC CRLM SR SP
Sbjct: 1970 VIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIPGFTPS*RARKCSCRLMLSRRDSP 1791
Score = 47.3 bits (97), Expect(3) = 4e-066
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +3 / +3
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQ 185
AQV M++SGA+ LA GG I+KD+VKSAVD+
Sbjct: 567 AQVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDE 671
Score = 35.4 bits (71), Expect(3) = 4e-066
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 1666 YGGKEEARKSNYTDMVN 1716
Score = 35.0 bits (70), Expect(2) = 5e-037
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -1 / -3
Query: 193 LTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
+ Y STADLT SL+I PP A APDL I
Sbjct: 679 MLYSSTADLTSSLVIFPPSPDARSMAPDLDI 587
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 173 bits (372), Expect(4) = 5e-066
Identities = 71/97 (73%), Positives = 81/97 (83%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 335 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 514
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYA 550
RGKEL AG+S C F+K DFM MP SDNTFDA YA
Sbjct: 515 RGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYA 625
Score = 129 bits (277), Expect(4) = 7e-038
Identities = 56/93 (60%), Positives = 67/93 (72%)
Frame = -2 / -3
Query: 537 SKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPLEMW*SLLFSPVIDVELNLAISIKGPPI 358
SKVLS+ G+ MKS F K L PA +SS PL +W SLLF+PV + +LNLAIS+ GPPI
Sbjct: 612 SKVLSENGIFMKSAFTKSQVPLTPATRLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPI 433
Query: 357 PHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
P PTSKTFIP +P+ A+KC CRLM SR SP
Sbjct: 432 PQPTSKTFIPGFTPS*RARKCSCRLMLSRRDSP 334
Score = 56.1 bits (116), Expect(4) = 5e-066
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3 / +2
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQYVKYH 200
A V M++SGA+ LA GG I+KD+VKSAVD+Y KYH
Sbjct: 83 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDEYEKYH 202
Score = 47.8 bits (98), Expect(4) = 5e-066
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 551 IQATCHAPDAQGVYSEVYRVLKP 619
I+ATCHAPD G Y E+YRVLKP
Sbjct: 627 IEATCHAPDPVGCYKEIYRVLKP 695
Score = 43.2 bits (88), Expect(4) = 7e-038
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -1 / -3
Query: 199 WYLTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
WY +Y STADLT SL+I PP A APDL I
Sbjct: 201 WYFSYSSTADLTSSLVIFPPSPDARSMAPDLDI 103
Score = 35.4 bits (71), Expect(4) = 5e-066
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 209 YGGKEEARKSNYTDMVN 259
Score = 24.9 bits (48), Expect(4) = 7e-038
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 548 HRPHQRCYQ 522
HR HQ+CYQ
Sbjct: 623 HRQHQKCYQ 597
Score = 24.4 bits (47), Expect(4) = 7e-038
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASG 571
GF+TR* SL* P SG
Sbjct: 694 GFNTR*ISL*QPTGSG 647
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 231 bits (498), Expect(2) = 4e-061
Identities = 96/122 (78%), Positives = 105/122 (86%)
Frame = +2 / +1
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GET RE++KRH+HFLALQLGLKKGMKVLDVGCGIGGPL EIARFSS S+TGLNNN Y
Sbjct: 172 WQGETLRESLKRHEHFLALQLGLKKGMKVLDVGCGIGGPLREIARFSSASVTGLNNNAYQ 351
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
ISRGKEL S GLSE C F+K DFM+MPI D TFDAAYAI+ATCHAPDA GVY E+ RVL
Sbjct: 352 ISRGKELNFSVGLSETCNFVKADFMNMPIPDATFDAAYAIEATCHAPDAVGVYREICRVL 531
Query: 614 KP 619
KP
Sbjct: 532 KP 537
Score = 170 bits (366), Expect = 1e-040
Identities = 76/120 (63%), Positives = 88/120 (73%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFSTR SL*TP ASG ASKV S IGM MKS K SLKP E++SSLPL
Sbjct: 536 GFSTRQISL*TPTASGAWHVASMA*AASKVASGIGMFMKSALTKLQVSLKPTEKLSSLPL 357
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
++W +LLFSPV D ELNLAIS+KGPP+PHPTS+TF+PFL P+C A+KC RL SR+VSP
Sbjct: 356 DIWYALLFSPVTDAELNLAISLKGPPMPHPTSRTFMPFLRPSCKARKCS*RLRLSRKVSP 177
Score = 114 bits (243), Expect = 1e-023
Identities = 59/119 (49%), Positives = 75/119 (63%)
Frame = -1 / -1
Query: 616 FQHTVDLTIDALCIWCMTCSLYCIGRIKGVIRYWHVHEVPLQEAALLAQTC*RNELLAP* 437
FQH+ DL +D I M C L +G ++G IR HVHEV L + A QT + E LAP*
Sbjct: 534 FQHSADLPVDTNSIRGMACRLDGVGCVEGGIRDRHVHEVSLDKVAGFTQTDRKVEFLAP* 355
Query: 436 DVVVIVVQSSYRC*AESGDFY*RSPNSTSHIQNLHTLLEPQL*CQKMLVPLNGFTGSLT 260
+V IVVQSS+RC*AESG+ S N+T H+ +LH LLE +L QKML+ L F S +
Sbjct: 354 YLVRIVVQSSHRC*AESGNLSQGSSNATPHV*DLHALLEAELQGQKMLMTLKAFA*SFS 178
Score = 28.1 bits (55), Expect(2) = 4e-061
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 205 LHGGKQESRKSNYTDL 252
++GG+ ESR SNY DL
Sbjct: 49 IYGGEVESRTSNYADL 96
>gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-K15, mRNA sequence
Length = 619
Score = 146 bits (313), Expect(3) = 3e-049
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +2 / +1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE+ RE+IKRH+HFLALQLG+K GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+
Sbjct: 370 GESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQIT 549
Query: 440 RGKELISSAGLSEQCCFLKGDFM 508
RGKEL AG+S C F+K DFM
Sbjct: 550 RGKELNRVAGVSGTCDFVKADFM 618
Score = 118 bits (252), Expect(2) = 2e-031
Identities = 50/83 (60%), Positives = 59/83 (71%)
Frame = -2 / -3
Query: 507 MKSPFKKQHCSLKPAEEMSSLPLEMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIP 328
MKS F K L PA +SS PL +W SLLF+PV + +LNLAIS+ GPPIP PTSKTFIP
Sbjct: 617 MKSAFTKSQVPLTPATRLSSFPLVIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFIP 438
Query: 327 FLSPNCSAKKCWCRLMASREVSP 259
+P+ A+KC CRLM SR SP
Sbjct: 437 GFTPS*RARKCSCRLMLSRRDSP 369
Score = 56.1 bits (116), Expect(3) = 3e-049
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3 / +3
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQYVKYH 200
A V M++SGA+ LA GG I+KD+VKSAVD+Y KYH
Sbjct: 117 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDEYEKYH 236
Score = 43.2 bits (88), Expect(2) = 2e-031
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -1 / -1
Query: 199 WYLTY*STADLTWSLLIDPPVLRASCSAPDLAI 101
WY +Y STADLT SL+I PP A APDL I
Sbjct: 235 WYFSYSSTADLTSSLVIFPPSPDARSMAPDLDI 137
Score = 35.4 bits (71), Expect(3) = 3e-049
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / +3
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 243 YGGKEEARKSNYTDMVN 293
>gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015390, whole
genome shotgun sequence
Length = 10237
Score = 61.6 bits (128), Expect(7) = 8e-041
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +2 / -2
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPD 577
++ DFM MP SDNTFDA YAI+ATCHAPD
Sbjct: 7026 IQADFMKMPFSDNTFDAVYAIEATCHAPD 6940
Score = 53.8 bits (111), Expect(7) = 8e-041
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GE+ RE+IKRH+HFLALQLG+K GMKV
Sbjct: 8110 GESLRESIKRHEHFLALQLGVKPGMKV 8030
Score = 44.6 bits (91), Expect(7) = 8e-041
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3 / -3
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQ 185
A V M++SGA+ LA GG I+KD+VKSAVD+
Sbjct: 9989 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDE 9885
Score = 41.4 bits (84), Expect(7) = 8e-041
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / -3
Query: 338 VLDVGCGIGGPLIEIARF 391
VLDVGCGIGGPL EIA+F
Sbjct: 7937 VLDVGCGIGGPLREIAKF 7884
Score = 35.9 bits (72), Expect(7) = 8e-041
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2 / -3
Query: 392 SSTSITGLNNNDYHISRGK 448
S S+TGLNNN+Y I+RGK
Sbjct: 7517 SLASVTGLNNNEYQITRGK 7461
Score = 35.4 bits (71), Expect(7) = 8e-041
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / -2
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 8889 YGGKEEARKSNYTDMVN 8839
Score = 26.7 bits (52), Expect(7) = 8e-041
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 584 GVYSEVYRVLKP 619
G Y E+YRVLKP
Sbjct: 6839 GCYKEIYRVLKP 6804
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 62.0 bits (129), Expect(6) = 1e-040
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / +3
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++ DFM+MPI D TFDAAYAI+ATCHAPDA
Sbjct: 7662 MQADFMNMPIPDATFDAAYAIEATCHAPDA 7751
Score = 59.3 bits (123), Expect(6) = 1e-040
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +2 / +2
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKV 340
+ GET RE++KRH+HFLALQLGLKKGMKV
Sbjct: 6992 WQGETLRESLKRHEHFLALQLGLKKGMKV 7078
Score = 51.5 bits (106), Expect(6) = 1e-040
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3 / +1
Query: 99 VMAKSGALQLARSTGGSISKDQVKSAVDQYVKYHVPP 209
+M+K+ AL LA GG I K+QVKSAVDQY Y + P
Sbjct: 6079 IMSKTSALDLASGLGGKIRKEQVKSAVDQYCTYFIYP 6189
Score = 44.1 bits (90), Expect(6) = 1e-040
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / +2
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 7187 LQVLDVGCGIGGPLREIARF 7246
Score = 40.0 bits (81), Expect(6) = 1e-040
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2 / +1
Query: 389 FSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGD 502
+SS S+TGLNNN Y ISRGK S+ L+ F + D
Sbjct: 7327 YSSASVTGLNNNAYQISRGKVTSSAFYLTMCISFTELD 7440
Score = 29.9 bits (59), Expect(6) = 1e-040
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 181 ISMSNTTYLHGGKQESRKSNYTDLI 255
+ N ++GG+ ESR SNY DL+
Sbjct: 6607 VRYENYHEIYGGEVESRTSNYADLV 6681
>gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3690_1A, mRNA sequence
Length = 362
Score = 170 bits (365), Expect = 2e-040
Identities = 68/96 (70%), Positives = 76/96 (79%)
Frame = +2 / +3
Query: 332 MKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMD 511
MKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+RGKEL AG+S C F+K DFM
Sbjct: 6 MKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMK 185
Query: 512 MPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
MP SDNTFDA Y I+ATCH PD G Y E+YRVLKP
Sbjct: 186 MPFSDNTFDAVYXIEATCHXPDPVGCYKEIYRVLKP 293
Score = 116 bits (249), Expect = 2e-024
Identities = 57/96 (59%), Positives = 66/96 (68%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GF+TR* SL* P SG ASKVLS+ G+ MKS F K L PA +SS PL
Sbjct: 292 GFNTR*ISL*QPTGSGXWHVASMX*TASKVLSENGIFMKSAFTKSQVPLTPATRLSSFPL 113
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFI 331
+W SLLF+PV + +LNLAIS+ GPPIP PTSKTFI
Sbjct: 112 VIWYSLLFNPVTEAKLNLAISLSGPPIPQPTSKTFI 5
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 62.0 bits (129), Expect(6) = 5e-037
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / +1
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++ DFM+MPI D TFDAAYAI+ATCHAPDA
Sbjct: 44026 MQADFMNMPIPDATFDAAYAIEATCHAPDA 44115
Score = 59.3 bits (123), Expect(6) = 5e-037
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +2 / +3
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKV 340
+ GET RE++KRH+HFLALQLGLKKGMKV
Sbjct: 43356 WQGETLRESLKRHEHFLALQLGLKKGMKV 43442
Score = 51.5 bits (106), Expect(6) = 5e-037
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3 / +2
Query: 99 VMAKSGALQLARSTGGSISKDQVKSAVDQYVKYHVPP 209
+M+K+ AL LA GG I K+QVKSAVDQY Y + P
Sbjct: 42443 IMSKTSALDLASGLGGKIRKEQVKSAVDQYCTYFIYP 42553
Score = 44.1 bits (90), Expect(6) = 5e-037
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / +3
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 43551 LQVLDVGCGIGGPLREIARF 43610
Score = 40.0 bits (81), Expect(6) = 5e-037
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2 / +2
Query: 389 FSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGD 502
+SS S+TGLNNN Y ISRGK S+ L+ F + D
Sbjct: 43691 YSSASVTGLNNNAYQISRGKVTSSAFYLTMCISFTELD 43804
Score = 29.9 bits (59), Expect(6) = 5e-037
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1 / +2
Query: 181 ISMSNTTYLHGGKQESRKSNYTDLI 255
+ N ++GG+ ESR SNY DL+
Sbjct: 42971 VRYENYHEIYGGEVESRTSNYADLV 43045
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 62.5 bits (130), Expect(6) = 1e-034
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / +3
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++GDFM+MPI D TFDAAYA+ ATCHAPDA
Sbjct: 2772 MQGDFMNMPIPDCTFDAAYALDATCHAPDA 2861
Score = 55.1 bits (114), Expect(6) = 1e-034
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2 / +1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GET RE++KR +HFLALQLGLKKGMKV
Sbjct: 2125 GETLRESLKRREHFLALQLGLKKGMKV 2205
Score = 45.1 bits (92), Expect(6) = 1e-034
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / +2
Query: 380 IARFSSTSITGLNNNDYHISRGKELIS 460
+ +FSS S+TGLNNNDY ISRG+ + S
Sbjct: 2444 LPKFSSASVTGLNNNDYQISRGQVMSS 2524
Score = 44.1 bits (90), Expect(6) = 1e-034
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / +2
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 2306 LQVLDVGCGIGGPLREIARF 2365
Score = 29.0 bits (57), Expect(6) = 1e-034
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2 / +1
Query: 584 GVYSEVYRVLKP 619
GVYSE++RVLKP
Sbjct: 2977 GVYSEIFRVLKP 3012
Score = 23.5 bits (45), Expect(6) = 1e-034
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 446 KELISSAGLSEQCCFLKGD 502
+EL S GLSE C ++K D
Sbjct: 2650 QELNFSVGLSETCNYVKVD 2706
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1119_B04
Length = 151721
Score = 61.6 bits (128), Expect(6) = 5e-033
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +2 / -2
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPD 577
++ DFM MP SDNTFDA YAI+ATCHAPD
Sbjct: 92302 IQADFMKMPFSDNTFDAVYAIEATCHAPD 92216
Score = 53.8 bits (111), Expect(6) = 5e-033
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GE+ RE+IKRH+HFLALQLG+K GMKV
Sbjct: 93386 GESLRESIKRHEHFLALQLGVKPGMKV 93306
Score = 44.6 bits (91), Expect(6) = 5e-033
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3 / -3
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQ 185
A V M++SGA+ LA GG I+KD+VKSAVD+
Sbjct: 95265 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDE 95161
Score = 41.4 bits (84), Expect(6) = 5e-033
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / -3
Query: 338 VLDVGCGIGGPLIEIARF 391
VLDVGCGIGGPL EIA+F
Sbjct: 93213 VLDVGCGIGGPLREIAKF 93160
Score = 35.9 bits (72), Expect(6) = 5e-033
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2 / -3
Query: 392 SSTSITGLNNNDYHISRGK 448
S S+TGLNNN+Y I+RGK
Sbjct: 92793 SLASVTGLNNNEYQITRGK 92737
Score = 35.4 bits (71), Expect(6) = 5e-033
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / -2
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 94165 YGGKEEARKSNYTDMVN 94115
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 62.0 bits (129), Expect(6) = 1e-032
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / -3
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++ DFM+MPI D TFDAAYAI+ATCHAPDA
Sbjct: 110530 MQADFMNMPIPDATFDAAYAIEATCHAPDA 110441
Score = 59.3 bits (123), Expect(6) = 1e-032
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +2 / -2
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKV 340
+ GET RE++KRH+HFLALQLGLKKGMKV
Sbjct: 111200 WQGETLRESLKRHEHFLALQLGLKKGMKV 111114
Score = 51.5 bits (106), Expect(6) = 1e-032
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3 / -1
Query: 99 VMAKSGALQLARSTGGSISKDQVKSAVDQYVKYHVPP 209
+M+K+ AL LA GG I K+QVKSAVDQY Y + P
Sbjct: 112113 IMSKTSALDLASGLGGKIRKEQVKSAVDQYCTYFIYP 112003
Score = 44.1 bits (90), Expect(6) = 1e-032
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / -2
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 111005 LQVLDVGCGIGGPLREIARF 110946
Score = 40.0 bits (81), Expect(6) = 1e-032
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2 / -1
Query: 389 FSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGD 502
+SS S+TGLNNN Y ISRGK S+ L+ F + D
Sbjct: 110865 YSSASVTGLNNNAYQISRGKVTSSAFYLTMCISFTELD 110752
Score = 29.9 bits (59), Expect(6) = 1e-032
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1 / -1
Query: 181 ISMSNTTYLHGGKQESRKSNYTDLI 255
+ N ++GG+ ESR SNY DL+
Sbjct: 111585 VRYENYHEIYGGEVESRTSNYADLV 111511
>gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11423_1A, mRNA sequence
Length = 417
Score = 81.7 bits (172), Expect(4) = 2e-032
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +2 / +1
Query: 329 GMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISRGK 448
GMKVLDVGCGIGGPL EIA+FS S+TGLNNN+Y I+RGK
Sbjct: 184 GMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGK 303
Score = 46.0 bits (94), Expect(4) = 2e-032
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +3
Query: 446 KELISSAGLSEQCCFLKGDFMDMPISDNTF 535
+ LI AG+S C F+K DFM+MP SDNTF
Sbjct: 303 RSLIG*AGVSGTCDFVKADFMEMPFSDNTF 392
Score = 43.2 bits (88), Expect(4) = 2e-032
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKK 328
GE+ RE+IKRH+HFLALQLG+ +
Sbjct: 116 GESLRESIKRHEHFLALQLGVNQ 184
Score = 26.7 bits (52), Expect(4) = 2e-032
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = +1 / +2
Query: 220 QESRKSNYTDLIS 258
+E+RKSNYTD+++
Sbjct: 2 EEARKSNYTDMVN 40
>dbj|AK060887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B06, full
insert sequence
Length = 1585
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +1
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 409 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 588
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 589 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 768
Query: 617 P 619
P
Sbjct: 769 P 771
>dbj|AK121681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070A11, full
insert sequence
Length = 1738
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +3
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 408 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 587
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 588 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 767
Query: 617 P 619
P
Sbjct: 768 P 770
>gb|AACV01005829.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005829,
whole genome shotgun sequence
Length = 5735
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / -2
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 952 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 773
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 772 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 593
Query: 617 P 619
P
Sbjct: 592 P 590
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +1
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 396568 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 396747
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 396748 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 396927
Query: 617 P 619
P
Sbjct: 396928 P 396930
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0003A09, complete sequence
Length = 167222
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +1
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 22852 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 23031
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 23032 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 23211
Query: 617 P 619
P
Sbjct: 23212 P 23214
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +1
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 1988023 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 1988202
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 1988203 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 1988382
Query: 617 P 619
P
Sbjct: 1988383 P 1988385
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +3
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 2180385 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 2180564
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 2180565 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 2180744
Query: 617 P 619
P
Sbjct: 2180745 P 2180747
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +2
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 1984103 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 1984282
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 1984283 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 1984462
Query: 617 P 619
P
Sbjct: 1984463 P 1984465
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 142 bits (305), Expect = 3e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +2
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 1984091 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 1984270
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 1984271 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLK 1984450
Query: 617 P 619
P
Sbjct: 1984451 P 1984453
>gb|AF042333.1|AF042333 Oryza sativa 24-methylene lophenol C24(1)methyltransferase mRNA,
complete cds
Length = 1542
Score = 142 bits (304), Expect = 4e-032
Identities = 57/121 (47%), Positives = 81/121 (66%)
Frame = +2 / +1
Query: 257 PGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHI 436
PG + REA + H+ +A L K G ++LDVGCG+GGP+ IA S +++ G+ N+Y +
Sbjct: 421 PGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQV 600
Query: 437 SRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLK 616
+R + AGL +C + G+F+ MP SD +FD AY+I+ATCHAP Q VY EV+RVLK
Sbjct: 601 NRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQEVYGEVFRVLK 780
Query: 617 P 619
P
Sbjct: 781 P 783
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 62.5 bits (130), Expect(5) = 2e-029
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / -3
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++GDFM+MPI D TFDAAYA+ ATCHAPDA
Sbjct: 7493 MQGDFMNMPIPDCTFDAAYALDATCHAPDA 7404
Score = 55.1 bits (114), Expect(5) = 2e-029
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2 / -1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GET RE++KR +HFLALQLGLKKGMKV
Sbjct: 8140 GETLRESLKRREHFLALQLGLKKGMKV 8060
Score = 45.1 bits (92), Expect(5) = 2e-029
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / -2
Query: 380 IARFSSTSITGLNNNDYHISRGKELIS 460
+ +FSS S+TGLNNNDY ISRG+ + S
Sbjct: 7821 LPKFSSASVTGLNNNDYQISRGQVMSS 7741
Score = 44.1 bits (90), Expect(5) = 2e-029
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / -2
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 7959 LQVLDVGCGIGGPLREIARF 7900
Score = 29.0 bits (57), Expect(5) = 2e-029
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2 / -1
Query: 584 GVYSEVYRVLKP 619
GVYSE++RVLKP
Sbjct: 7288 GVYSEIFRVLKP 7253
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 62.0 bits (129), Expect(5) = 3e-028
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / -2
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++ DFM+MPI D TFDAAYAI+ATCHAPDA
Sbjct: 7170008 MQADFMNMPIPDATFDAAYAIEATCHAPDA 7169919
Score = 59.3 bits (123), Expect(5) = 3e-028
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +2 / -1
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKV 340
+ GET RE++KRH+HFLALQLGLKKGMKV
Sbjct: 7170678 WQGETLRESLKRHEHFLALQLGLKKGMKV 7170592
Score = 51.5 bits (106), Expect(5) = 3e-028
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3 / -3
Query: 99 VMAKSGALQLARSTGGSISKDQVKSAVDQYVKYHVPP 209
+M+K+ AL LA GG I K+QVKSAVDQY Y + P
Sbjct: 7171591 IMSKTSALDLASGLGGKIRKEQVKSAVDQYCTYFIYP 7171481
Score = 44.1 bits (90), Expect(5) = 3e-028
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / -1
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 7170483 LQVLDVGCGIGGPLREIARF 7170424
Score = 40.0 bits (81), Expect(5) = 3e-028
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2 / -3
Query: 389 FSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGD 502
+SS S+TGLNNN Y ISRGK S+ L+ F + D
Sbjct: 7170343 YSSASVTGLNNNAYQISRGKVTSSAFYLTMCISFTELD 7170230
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 61.6 bits (128), Expect(6) = 8e-027
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +2 / -1
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPD 577
++ DFM MP SDNTFDA YAI+ATCHAPD
Sbjct: 2876125 IQADFMKMPFSDNTFDAVYAIEATCHAPD 2876039
Score = 53.8 bits (111), Expect(6) = 8e-027
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GE+ RE+IKRH+HFLALQLG+K GMKV
Sbjct: 2877209 GESLRESIKRHEHFLALQLGVKPGMKV 2877129
Score = 44.6 bits (91), Expect(6) = 8e-027
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3 / -2
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQ 185
A V M++SGA+ LA GG I+KD+VKSAVD+
Sbjct: 2879088 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDE 2878984
Score = 41.4 bits (84), Expect(6) = 8e-027
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / -2
Query: 338 VLDVGCGIGGPLIEIARF 391
VLDVGCGIGGPL EIA+F
Sbjct: 2877036 VLDVGCGIGGPLREIAKF 2876983
Score = 35.9 bits (72), Expect(6) = 8e-027
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2 / -2
Query: 392 SSTSITGLNNNDYHISRGK 448
S S+TGLNNN+Y I+RGK
Sbjct: 2876616 SLASVTGLNNNEYQITRGK 2876560
Score = 35.4 bits (71), Expect(6) = 8e-027
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / -1
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 2877988 YGGKEEARKSNYTDMVN 2877938
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 62.5 bits (130), Expect(4) = 3e-025
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / -3
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++GDFM+MPI D TFDAAYA+ ATCHAPDA
Sbjct: 7493 MQGDFMNMPIPDCTFDAAYALDATCHAPDA 7404
Score = 55.1 bits (114), Expect(4) = 3e-025
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2 / -1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GET RE++KR +HFLALQLGLKKGMKV
Sbjct: 8140 GETLRESLKRREHFLALQLGLKKGMKV 8060
Score = 45.1 bits (92), Expect(4) = 3e-025
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / -2
Query: 380 IARFSSTSITGLNNNDYHISRGKELIS 460
+ +FSS S+TGLNNNDY ISRG+ + S
Sbjct: 7821 LPKFSSASVTGLNNNDYQISRGQVMSS 7741
Score = 44.1 bits (90), Expect(4) = 3e-025
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / -2
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 7959 LQVLDVGCGIGGPLREIARF 7900
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 61.6 bits (128), Expect(6) = 3e-024
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +2 / -1
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPD 577
++ DFM MP SDNTFDA YAI+ATCHAPD
Sbjct: 5741346 IQADFMKMPFSDNTFDAVYAIEATCHAPD 5741260
Score = 53.8 bits (111), Expect(6) = 3e-024
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GE+ RE+IKRH+HFLALQLG+K GMKV
Sbjct: 5742430 GESLRESIKRHEHFLALQLGVKPGMKV 5742350
Score = 44.6 bits (91), Expect(6) = 3e-024
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3 / -2
Query: 81 AQVHHQVMAKSGALQLARSTGGSISKDQVKSAVDQ 185
A V M++SGA+ LA GG I+KD+VKSAVD+
Sbjct: 5744309 APVIDAAMSRSGAMDLASGLGGKITKDEVKSAVDE 5744205
Score = 41.4 bits (84), Expect(6) = 3e-024
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / -2
Query: 338 VLDVGCGIGGPLIEIARF 391
VLDVGCGIGGPL EIA+F
Sbjct: 5742257 VLDVGCGIGGPLREIAKF 5742204
Score = 35.9 bits (72), Expect(6) = 3e-024
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2 / -2
Query: 392 SSTSITGLNNNDYHISRGK 448
S S+TGLNNN+Y I+RGK
Sbjct: 5741837 SLASVTGLNNNEYQITRGK 5741781
Score = 35.4 bits (71), Expect(6) = 3e-024
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1 / -1
Query: 208 HGGKQESRKSNYTDLIS 258
+GGK+E+RKSNYTD+++
Sbjct: 5743209 YGGKEEARKSNYTDMVN 5743159
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 62.5 bits (130), Expect(5) = 9e-024
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2 / -2
Query: 491 LKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
++GDFM+MPI D TFDAAYA+ ATCHAPDA
Sbjct: 1963647 MQGDFMNMPIPDCTFDAAYALDATCHAPDA 1963558
Score = 55.1 bits (114), Expect(5) = 9e-024
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKV 340
GET RE++KR +HFLALQLGLKKGMKV
Sbjct: 1964294 GETLRESLKRREHFLALQLGLKKGMKV 1964214
Score = 45.1 bits (92), Expect(5) = 9e-024
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / -1
Query: 380 IARFSSTSITGLNNNDYHISRGKELIS 460
+ +FSS S+TGLNNNDY ISRG+ + S
Sbjct: 1963975 LPKFSSASVTGLNNNDYQISRGQVMSS 1963895
Score = 44.1 bits (90), Expect(5) = 9e-024
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / -1
Query: 332 MKVLDVGCGIGGPLIEIARF 391
++VLDVGCGIGGPL EIARF
Sbjct: 1964113 LQVLDVGCGIGGPLREIARF 1964054
Score = 31.8 bits (63), Expect(5) = 9e-024
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3 / -1
Query: 120 LQLARSTGGSISKDQVKSAVDQYVKYHVPPW 212
+ L+ TGG+ D V D+YV +HVP W
Sbjct: 4819105 MPLSAVTGGTYIADVVLG*KDKYVVFHVPLW 4819013
>gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-B03, mRNA sequence
Length = 560
Score = 107 bits (228), Expect = 1e-021
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +2 / +1
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
I+RGKEL AG+S C F+K DFM MP SDNTFDA YAI+ATCHAPD G Y E+YRVL
Sbjct: 25 ITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVL 204
Query: 614 KP 619
KP
Sbjct: 205 KP 210
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,375,363,965
Number of Sequences: 438736
Number of extensions: 66360756
Number of successful extensions: 294244
Number of sequences better than 1.0e-020: 43
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 133479912699
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)